CK939832

Overview
NameCK939832
Unique NameCK939832
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length842
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939832 vs. ExPASy Swiss-Prot
Match: XTH_SOYBN (Probable xyloglucan endotransglucosylase/hydrolase (Fragment) OS=Glycine max GN=XTH PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.730e-67
Identity = 118/197 (59.90%), Postives = 147/197 (74.62%), Query Frame = 3
Query:  153 FYQDFDITWGDGRGKILNNGQLLSLSLDKASGSGFQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGLIKTDWTQAPFTASYRNFNANAC 743
            F +++  TW     K  N G  + L LDK +G+GFQSK  YLFG   M +K+VPG+SAGTVTA+YL S  +  DEIDFEFLGN +G PY L TNVFT GKGDREQ+ +LWFDPT ++H YS+LWN  +IVF+VD  PIR FKN +  GV FP +QPM+IY+SLWNADDWATRGGL KTDW++APF A+Y+ F+ + C
Sbjct:   33 FGRNYVPTWAFDHIKYFNGGSDIQLHLDKYTGTGFQSKGSYLFGHFSMYIKMVPGDSAGTVTAFYLSSQNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEYHRYSILWNLYQIVFFVDEVPIRVFKNSKDLGVKFPFDQPMKIYNSLWNADDWATRGGLEKTDWSKAPFIAAYKGFHIDGC 229          
BLAST of CK939832 vs. ExPASy Swiss-Prot
Match: XTH_WHEAT (Probable xyloglucan endotransglucosylase/hydrolase OS=Triticum aestivum GN=XTH PE=2 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.951e-67
Identity = 117/197 (59.39%), Postives = 147/197 (74.62%), Query Frame = 3
Query:  153 FYQDFDITWGDGRGKILNNGQLLSLSLDKASGSGFQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGLIKTDWTQAPFTASYRNFNANAC 743
            F +++  TW       +N G+ + LSLDK +G+GFQ++  YLFG   M +KLV G+SAGTVTA+YL S  S  DEIDFEFLGN +G PY L TNVF+ GKGDREQ+ +LWFDPT D+H+YSVLWN   I F+VD +PIR FKN +  GV +P +QPM++YSSLWNADDWATRGG  KTDW++APF ASYR F+ + C
Sbjct:   32 FDKNYVPTWAQDHIHYVNGGREVQLSLDKTTGTGFQTRGSYLFGHFSMHIKLVGGDSAGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFSGGKGDREQRIYLWFDPTKDYHSYSVLWNLYMIAFFVDDTPIRVFKNSKDLGVRYPFDQPMKLYSSLWNADDWATRGGREKTDWSKAPFVASYRGFHVDGC 228          
BLAST of CK939832 vs. ExPASy Swiss-Prot
Match: XTH1_SOLLC (Probable xyloglucan endotransglucosylase/hydrolase 1 OS=Solanum lycopersicum GN=XTH1 PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 8.587e-67
Identity = 117/197 (59.39%), Postives = 146/197 (74.11%), Query Frame = 3
Query:  153 FYQDFDITWGDGRGKILNNGQLLSLSLDKASGSGFQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGLIKTDWTQAPFTASYRNFNANAC 743
            F+++++ +W     K LN G    L LD++SG+GFQSK  YLFG   M+++LV G+SAG VTA+YL S  +  DEIDFEFLGN +G PY L TNVFT GKG+REQ+ +LWFDPT  +H+YSVLWN   IV +VD  PIR FKN +  GV FP NQPM+IYSSLW+ADDWATRGGL KT+W  APFTASY +F+ + C
Sbjct:   33 FWKNYEPSWASHHIKFLNGGTTTDLILDRSSGAGFQSKKSYLFGHFSMKMRLVGGDSAGVVTAFYLSSNNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGNREQRIYLWFDPTKGYHSYSVLWNTYLIVIFVDDVPIRAFKNSKDLGVKFPFNQPMKIYSSLWDADDWATRGGLEKTNWANAPFTASYTSFHVDGC 229          
BLAST of CK939832 vs. ExPASy Swiss-Prot
Match: XTH6_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 6 OS=Arabidopsis thaliana GN=XTH6 PE=2 SV=2)

HSP 1 Score: 253.447 bits (646), Expect = 1.121e-66
Identity = 114/228 (50.00%), Postives = 164/228 (71.93%), Query Frame = 3
Query:   84 YSKNFTLLISIAISTLMV-------ASASNFYQDFDITWGDGRGKILNNGQLLSLSLDKASGSGFQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTW-DEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGLIKTDWTQAPFTASYRNFNANAC 743
            YS +F   + + I TL+        A  + F +DF   W +   + + +G+ + L LD+++G GF SK +YLFG++ M++KL+PG+SAGTVTA+Y+ S  +T  DE+DFEFLGN SG PY++ TN+F +GKGDREQ+ +LWFDP+ D+HTY++LW+ + IVFYVD  PIRE+KN E+  + +P +QPM +YS+LW ADDWATRGGL K DW++APF A Y++F+   C
Sbjct:    5 YSPSFPGTLCLCIFTLLTLMFIRVSARPATFVEDFKAAWSESHIRQMEDGKAIQLVLDQSTGCGFASKRKYLFGRVSMKIKLIPGDSAGTVTAFYMNSDTATVRDELDFEFLGNRSGQPYSVQTNIFAHGKGDREQRVNLWFDPSMDYHTYTILWSHKHIVFYVDDVPIREYKNNEAKNIAYPTSQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYKDFDIEGC 232          
BLAST of CK939832 vs. ExPASy Swiss-Prot
Match: XTH_BRAOB (Xyloglucan endotransglucosylase/hydrolase OS=Brassica oleracea var. botrytis GN=XET16A PE=1 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 5.566e-66
Identity = 126/233 (54.08%), Postives = 150/233 (64.38%), Query Frame = 3
Query:  153 FYQDFDITWGDGRGKILNNGQLLSLSLDKASGSGFQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGLIKTDWTQAPFTASYRNFNANACVWXXXXXXXXXXXXXPWFSQELXXTGRE---RLKWV 842
            F +++  TW     K LN G  L L LDK +G+GFQSK  YLFG   M +KL  G++AG VTA+YL S  +  DEIDFEFLGN +G P  L TNVFT GKG+REQ+ +LWFDP+  +HTYSVLWN  +IVF+VD  PIR FKN +  GV FP NQPM++YSSLWNADDWATRGGL KT+W  APF ASYR F+ + C                W   E      E   RLKWV
Sbjct:   34 FGRNYVPTWAFDHQKQLNGGSELQLILDKYTGTGFQSKGSYLFGHFSMHIKLPAGDTAGVVTAFYLSSTNNEHDEIDFEFLGNRTGQPVILQTNVFTGGKGNREQRIYLWFDPSKAYHTYSVLWNLYQIVFFVDNIPIRVFKNAKDLGVRFPFNQPMKLYSSLWNADDWATRGGLEKTNWANAPFIASYRGFHIDGCQASVEAKYCATQGRMWWDQNEFRDLDAEQYRRLKWV 266          
BLAST of CK939832 vs. ExPASy Swiss-Prot
Match: XTH4_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 4 OS=Arabidopsis thaliana GN=XTH4 PE=1 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 2.115e-65
Identity = 123/233 (52.79%), Postives = 150/233 (64.38%), Query Frame = 3
Query:  153 FYQDFDITWGDGRGKILNNGQLLSLSLDKASGSGFQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGLIKTDWTQAPFTASYRNFNANACVWXXXXXXXXXXXXXPWFSQELXXTGRE---RLKWV 842
            F +++  TW     K  N G  L L LDK +G+GFQSK  YLFG   M +KL  G++AG VTA+YL S  +  DEIDFEFLGN +G P  L TNVFT GKG+REQ+ +LWFDP+  +HTYS+LWN  +IVF+VD  PIR FKN +  GV FP NQPM++YSSLWNADDWATRGGL KT+W  APF ASY+ F+ + C                W  +E      E   RLKWV
Sbjct:   35 FGRNYVPTWAFDHQKQFNGGSELQLILDKYTGTGFQSKGSYLFGHFSMHIKLPAGDTAGVVTAFYLSSTNNEHDEIDFEFLGNRTGQPAILQTNVFTGGKGNREQRIYLWFDPSKAYHTYSILWNMYQIVFFVDNIPIRTFKNAKDLGVRFPFNQPMKLYSSLWNADDWATRGGLEKTNWANAPFVASYKGFHIDGCQASVEAKYCATQGRMWWDQKEFRDLDAEQWRRLKWV 267          
BLAST of CK939832 vs. ExPASy Swiss-Prot
Match: XTH9_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 9 OS=Arabidopsis thaliana GN=XTH9 PE=2 SV=2)

HSP 1 Score: 248.44 bits (633), Expect = 3.608e-65
Identity = 110/214 (51.40%), Postives = 156/214 (72.90%), Query Frame = 3
Query:  102 LLISIAISTLMVASASNFYQDFDITWGDGRGKILNNGQLLSLSLDKASGSGFQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGLIKTDWTQAPFTASYRNFNANAC 743
            +++ + +S     S + F + +  +W       +N G++  L LD  SG+GF+S+S+YLFGK+ +Q+KLV G+SAGTVTA+Y+ S G   +E DFEFLGN +G+PY + TN++ NG G+REQ+ +LWFDPT +FHTYS+LW+ + +VF VD +PIR  KNLE  G+ F K+Q M +YSS+WNADDWAT+GGL+KTDW+ APF ASY+ F  +AC
Sbjct:   12 MIMVLVVSCGEAVSGAKFDELYRSSWA--MDHCVNEGEVTKLKLDNYSGAGFESRSKYLFGKVSIQIKLVEGDSAGTVTAFYMSSDGPNHNEFDFEFLGNTTGEPYIVQTNIYVNGVGNREQRLNLWFDPTTEFHTYSILWSKRSVVFMVDETPIRVQKNLEEKGIPFAKDQAMGVYSSIWNADDWATQGGLVKTDWSHAPFVASYKEFQIDAC 223          
BLAST of CK939832 vs. ExPASy Swiss-Prot
Match: XTH7_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 7 OS=Arabidopsis thaliana GN=XTH7 PE=2 SV=2)

HSP 1 Score: 246.899 bits (629), Expect = 1.050e-64
Identity = 113/216 (52.31%), Postives = 155/216 (71.76%), Query Frame = 3
Query:   99 TLLISIAISTLMVASASNFYQDFDITWGDGRGKILNNGQLLSLSLDKASGSGFQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYLKSP-GSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGLIKTDWTQAPFTASYRNFNANAC 743
            +L +  A+   +++  + F  DF I W D     ++ G+ + L LD +SG GF SK +YLFG++ M++KL+PG+SAGTVTA+Y+ S   S  DE+DFEFLGN SG PYT+ TNVF +GKGDREQ+ +LWFDP+ DFH Y++ WN  RIVFYVD  PIR +KN E+  V +P+ QPM +YS+LW ADDWATRGG+ K +W++APF A Y++F+   C
Sbjct:   16 SLCLFAALYQPVMSRPAKFEDDFRIAWSDTHITQIDGGRAIQLKLDPSSGCGFASKKQYLFGRVSMKIKLIPGDSAGTVTAFYMNSDTDSVRDELDFEFLGNRSGQPYTVQTNVFAHGKGDREQRVNLWFDPSRDFHEYAISWNHLRIVFYVDNVPIRVYKNNEARKVPYPRFQPMGVYSTLWEADDWATRGGIEKINWSRAPFYAYYKDFDIEGC 231          
BLAST of CK939832 vs. ExPASy Swiss-Prot
Match: XTH8_ORYSJ (Xyloglucan endotransglycosylase/hydrolase protein 8 OS=Oryza sativa subsp. japonica GN=XTH8 PE=1 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 6.368e-62
Identity = 112/229 (48.91%), Postives = 162/229 (70.74%), Query Frame = 3
Query:   78 MAYSKNFTLLISIAISTLMVASAS--NFYQDFDITWGDGRGKILNNG---QLLSLSLDKASGSGFQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYLKS-PGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGLIKTDWTQAPFTASYRNFNANACV 746
            MA     ++  ++A+S L  +SA+   FY+ FD+       +++++    Q ++L+LD++SGSGF SK  YLFG+  +Q+KLV GNSAGTVT++YL S  G   DEID EF+GNLSG+PY ++TNV+ NG G +E QF+LWFDPTADFHTY ++WNPQ I+F VD  P+R FK  +   + +P+++PMR++++LW+   WATR G +K DW+ APF  SYR ++ NACV
Sbjct:    1 MAKHLALSVAAAVAVSWLAASSAAAAGFYEKFDVVGAGDHVRVVSDDGKTQQVALTLDRSSGSGFTSKDTYLFGEFSVQMKLVGGNSAGTVTSFYLSSGEGDGHDEIDIEFMGNLSGNPYVMNTNVWANGDGKKEHQFYLWFDPTADFHTYKIIWNPQNIIFQVDDVPVRTFKKYDD--LAYPQSKPMRLHATLWDGSYWATRHGDVKIDWSGAPFVVSYRGYSTNACV 227          
BLAST of CK939832 vs. ExPASy Swiss-Prot
Match: XTH10_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 10 OS=Arabidopsis thaliana GN=XTH10 PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.419e-61
Identity = 115/264 (43.56%), Postives = 159/264 (60.23%), Query Frame = 3
Query:   87 SKNFTLLISIAI--------STLMVASASNFYQDFDITWGDGRGKILNNGQLLSLSLDKASGSGFQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGLIKTDWTQAPFTASYRNFNANACVWXXXXXXXXXXXXXPWFSQ----ELXXTGRERLKWV 842
            SK F LL+  +I        S   V S+ +F +DF +TW        N+G+  +L LD+ SG+ F S   +LFG+IDM++KL+ G+S GTV AYY+ S     DEIDFEFLGN++G PY L TNV+  G  +RE++ HLWFDP  DFHTYS+LWN  +IVF VD  PIR ++N    GV +P+ QPM + +SLWN + WATRGG  K DW++ PF AS+ ++  +AC+W              W+++     L    +   KWV
Sbjct:    7 SKPFVLLVGFSIISSLLLWVSQASVVSSGDFNKDFFVTWSPTHVNTSNDGRSRTLKLDQESGASFSSIQTFLFGQIDMKIKLIRGSSQGTVVAYYMSSDQPNRDEIDFEFLGNVNGQPYILQTNVYAEGLDNREERIHLWFDPAKDFHTYSILWNIHQIVFMVDQIPIRLYRNHGEKGVAYPRLQPMSVQASLWNGESWATRGGHDKIDWSKGPFVASFGDYKIDACIWIGNTSFCNGESTENWWNKNEFSSLTRVQKRWFKWV 270          
The following BLAST results are available for this feature:
BLAST of CK939832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
XTH_SOYBN1.730e-6759.90Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_WHEAT2.951e-6759.39Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH1_SOLLC8.587e-6759.39Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH6_ARATH1.121e-6650.00Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH_BRAOB5.566e-6654.08Xyloglucan endotransglucosylase/hydrolase OS=Brass... [more]
XTH4_ARATH2.115e-6552.79Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH9_ARATH3.608e-6551.40Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH7_ARATH1.050e-6452.31Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH8_ORYSJ6.368e-6248.91Xyloglucan endotransglycosylase/hydrolase protein ... [more]
XTH10_ARATH1.419e-6143.56Probable xyloglucan endotransglucosylase/hydrolase... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004745_A03 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IF_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939832 ID=CK939832; Name=CK939832; organism=Citrus sinensis; type=EST; length=842bp
GGGGAACTCGCACACACATAAATACCAACCCTTATAAGCTGCTTTCTGGA
AACTCTCTCTTTATTGATTGCAGTACTATGGCTTACTCGAAAAATTTTAC
CCTGCTCATCTCTATAGCAATCAGCACTTTGATGGTTGCTTCTGCTAGTA
ATTTCTACCAAGACTTTGATATCACTTGGGGAGATGGCCGTGGTAAGATA
CTCAACAACGGCCAGCTTCTCTCCCTCTCCCTTGACAAAGCCTCAGGCTC
AGGCTTCCAGTCCAAGAGCGAGTACCTTTTTGGCAAAATCGACATGCAAC
TCAAGCTTGTCCCTGGCAATTCTGCCGGCACAGTCACCGCCTACTACTTA
AAATCACCAGGATCAACATGGGATGAGATAGACTTCGAATTCTTGGGGAA
TTTAAGTGGTGATCCTTATACTCTTCATACTAATGTGTTCACAAATGGCA
AAGGTGACAGAGAGCAACAATTCCACCTCTGGTTTGACCCCACTGCTGAC
TTTCACACCTATTCCGTTCTCTGGAATCCCCAACGTATTGTCTTCTATGT
TGATGGCTCGCCAATTAGAGAGTTCAAGAACTTGGAATCAAACGGCGTAC
TCTTTCCCAAAAACCAGCCGATGAGGATTTACTCGAGTCTCTGGAACGCC
GATGACTGGGCCACGAGAGGTGGCCTTATCAAAACTGACTGGACCCAAGC
TCCCTTCACTGCTTCTTACAGAAACTTCAATGCCAATGCTTGCGTCTGGT
CTAATGGAAAATCCTCTTGCAACTCAAAAAATAATAATCCATGGTTCTCG
CAAGAACTTGANNNCACTGGCCGAGAGAGACTCAAATGGGTG
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