CK939832

Overview
NameCK939832
Unique NameCK939832
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length842
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939832 vs. ExPASy Swiss-Prot
Match: XTH29_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 29 OS=Arabidopsis thaliana GN=XTH29 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.746e-35
Identity = 77/194 (39.69%), Postives = 116/194 (59.79%), Query Frame = 3
Query:  186 GRGKILNN--GQLLSLSLDKASGSGFQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTW----DEIDFEFLGNLSGDPYTLHTNVFTNGKGDR--EQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGLIKTDWTQAPFTASYRNFNANAC 743
            G G ++ +   + + L LDK +GSGF S S Y  G     +KL    +AG V A+Y  S G  +    DE+D EFLGNL G P+   TN++ NG  +R  E+++ LWFDP+ +FH YS+LW P +I+F+VD  PIRE    E     +P+ +PM +Y+++W+A  WAT GG    D+T +PF + +++   + C
Sbjct:   49 GEGNLIRSPDDRSVRLLLDKYTGSGFISSSMYQHGFFSSLIKLPGAYTAGIVVAFYT-SNGDVFVKDHDELDIEFLGNLEGKPWRFQTNMYGNGSTNRGREERYRLWFDPSKEFHRYSILWTPTKIIFWVDDVPIREILRKEEMNGDYPQ-KPMSLYATIWDASSWATSGGKFGVDYTFSPFVSEFKDIALDGC 240          
BLAST of CK939832 vs. ExPASy Swiss-Prot
Match: XTH11_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 11 OS=Arabidopsis thaliana GN=XTH11 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.756e-33
Identity = 80/207 (38.65%), Postives = 121/207 (58.45%), Query Frame = 3
Query:  123 STLMVASASNFYQDFDITWGDGRGKILNNGQLLSLSLDKASGSGFQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGLIKTDWTQAPFTASYRNFNANAC 743
            +T  V   +N+YQ    TWG  +  ++N    L L+LDK SGSGF+S+  Y  G  ++++K     S G +T++YL S  S  DE+ F+ LG  +G PY L+TN++  G+G ++Q+F LWFDPT D+H+YS LWNP ++VFYVD +PIR +   ++  V +P  Q M +  S+ N       G +I  D  Q P+ A ++      C
Sbjct:   18 TTGFVTWGNNYYQ----TWGH-QALVINKTSELQLTLDKNSGSGFESQLIYGSGYFNVRIKAPQTTSTGVITSFYLISRSSRHDELCFQILGK-NGPPYLLNTNMYLYGEGGKDQRFRLWFDPTKDYHSYSFLWNPNQLVFYVDDTPIRVYS--KNPDVYYPSVQTMFLMGSVQN-------GSII--DPKQMPYIAKFQASKIEGC 207          
BLAST of CK939832 vs. ExPASy Swiss-Prot
Match: CRR1_YEAST (Probable glycosidase CRR1 OS=Saccharomyces cerevisiae GN=CRR1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.240e-17
Identity = 69/214 (32.24%), Postives = 102/214 (47.66%), Query Frame = 3
Query:  144 ASNFYQDFDITWGDGRGKILNNGQLLSLSLDKASGSGFQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGD--REQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLE-----SNGVLFPKNQPMRIYSSLW---------NADDWATRGGLIKTDWTQAPFTASYRNFNAN 737
            A    +DFD T         ++G ++     K +GS   S   +L+GK  +++K     S G VTA+ L S  +  DEIDFE+LG   GD  T  +N ++ G  D  R Q+F +  D  A +HTY + W+P RI++YVDG   R     +     S    +P+  PMR+  ++W            +WA  GGLI  DW  +P       F A+
Sbjct:  144 AEKMLEDFDFTHSGYTSIEASSGNIVLAMPKKTTGSLITSTRSFLYGKASVRMKTA--RSRGVVTAFDLTS--AIGDEIDFEWLG---GDLMTAQSNYYSQGHLDYTRMQRFPVGADTWATYHTYEIDWDPDRIIWYVDGKIARTVLKKDTWDPISKEYRYPQT-PMRLEIAVWPGGSETNGPGTINWA--GGLI--DWENSPDIIEKGQFTAH 345          
BLAST of CK939832 vs. ExPASy Swiss-Prot
Match: GUB_PAEPO (Beta-glucanase OS=Paenibacillus polymyxa GN=gluB PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.150e-17
Identity = 67/213 (31.46%), Postives = 98/213 (46.01%), Query Frame = 3
Query:   54 SLFIDCSTMAYSKNFTLLISIAISTLMVASASNFYQDFDITWGDGRGKILNNGQLLSLSLDKASGSGF-----QSKSEYLFGKIDMQLKLVPGNSAGTVTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWN---ADDW 659
            SLF   S  A +  +  L     ST   A   +  Q F+ TW        N+G+L  LSL   + + F     +S + Y +G  ++ +K  P  + G V++++     S G+ WDEID EFLG    D   +  N +TNG G  E+  +L FD +  FHTY+  W P  I +YVDG        L+        + P +I  +LWN    D W
Sbjct:   17 SLFFSVSAFAGNVFWEPLSYFNSSTWQKADGYSNGQMFNCTWRANNVNFTNDGKL-KLSLTSPANNKFDCGEYRSTNNYGYGLYEVSMK--PAKNTGIVSSFFTYTGPSHGTQWDEIDIEFLGK---DTTKVQFNYYTNGVGGHEKIINLGFDASTSFHTYAFDWQPGYIKWYVDGV-------LKHTATTNIPSTPGKIMMNLWNGTGVDSW 216          
BLAST of CK939832 vs. ExPASy Swiss-Prot
Match: GUB_PAEMA (Beta-glucanase OS=Paenibacillus macerans PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.622e-15
Identity = 55/175 (31.43%), Postives = 85/175 (48.57%), Query Frame = 3
Query:  165 FDITWGDGRGKILNNGQL----LSLSLDKASGSGFQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWN---ADDW 659
            F+ TW        N+G+L     S + +K   + ++S + Y +G  ++ +K  P  + G V++++     + G+ WDEID EFLG    D   +  N +TNG G  E+   L FD +  FHTY+  W P  I +YVDG        L+        + P +I  +LWN    DDW
Sbjct:   53 FNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGK---DTTKVQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV-------LKHTATANIPSTPGKIMMNLWNGTGVDDW 215          
BLAST of CK939832 vs. ExPASy Swiss-Prot
Match: GUB_ORPSP (Beta-glucanase OS=Orpinomyces sp. (strain PC-2) GN=licA PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.962e-15
Identity = 57/177 (32.20%), Postives = 88/177 (49.72%), Query Frame = 3
Query:  165 FDITWGDGRGKILNNGQLLSLSLDKASGSGF-----QSKSEYLFGKIDMQLKLVPGNSAGTVTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPI-REFKNLESNGVLFPKNQPMRIYSSLWN---ADDW 659
            F+  W     K   NG+L  L++D+  GSG+     ++K+ Y +G   + +K  P  + G V++++     S G+ WDEID EFLG    D   +  N +TNG+G  E   +L FD +  FHTY   W    I +YVDG+ +   + N+         + P +I  + WN    DDW
Sbjct:   61 FNCRWTPNNDKF-ENGKL-KLTIDR-DGSGYTCGEYRTKNYYGYGMFQVNMK--PIKNPGVVSSFFTYTGPSDGTKWDEIDIEFLGY---DTTKVQFNYYTNGQGHHEHIHYLGFDASQGFHTYGFFWARNSITWYVDGTAVYTAYDNI--------PDTPGKIMMNAWNGIGVDDW 221          
BLAST of CK939832 vs. ExPASy Swiss-Prot
Match: GUB_BACSU (Beta-glucanase OS=Bacillus subtilis GN=bglS PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 6.457e-14
Identity = 53/175 (30.29%), Postives = 86/175 (49.14%), Query Frame = 3
Query:  165 FDITWGDGRGKILNNGQ----LLSLSLDKASGSGFQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWN---ADDW 659
            F+ TW      + + G+    L S + +K      +S   Y +G  ++++K  P  + G V++++     + G+ WDEID EFLG    D   +  N +TNG G+ E+   L FD    +HTY+  W P  I +YVDG    + K+  +N +      P +I  +LWN    D+W
Sbjct:   58 FNCTWRANNVSMTSLGEMRLALTSPAYNKFDCGENRSVQTYGYGLYEVRMK--PAKNTGIVSSFFTYTGPTDGTPWDEIDIEFLGK---DTTKVQFNYYTNGAGNHEKIVDLGFDAANAYHTYAFDWQPNSIKWYVDG----QLKHTATNQI---PTTPGKIMMNLWNGTGVDEW 220          
BLAST of CK939832 vs. ExPASy Swiss-Prot
Match: GUB_BACLI (Beta-glucanase OS=Bacillus licheniformis GN=bg1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.457e-14
Identity = 54/176 (30.68%), Postives = 84/176 (47.73%), Query Frame = 3
Query:  165 FDITWGDGRGKILNNGQLLSLSLDKASGSGF-----QSKSEYLFGKIDMQLKLVPGNSAGTVTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWN---ADDW 659
            F+ TW      + + G++  LSL   S + F     +S   Y +G  ++ +K  P  + G V++++     + G+ WDEID EFLG    D   +  N +TNG G+ E+  +L FD    +HTY+  W P  I +YVDG        L+          P +I  +LWN    D+W
Sbjct:   59 FNCTWRANNVSMTSLGEM-RLSLTSPSYNKFDCGENRSVQTYGYGLYEVNMK--PAKNVGIVSSFFTYTGPTDGTPWDEIDIEFLGK---DTTKVQFNYYTNGVGNHEKIVNLGFDAANSYHTYAFDWQPNSIKWYVDG-------QLKHTATTQIPQTPGKIMMNLWNGAGVDEW 221          
BLAST of CK939832 vs. ExPASy Swiss-Prot
Match: GUB_CLOTH (Beta-glucanase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=licB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.434e-14
Identity = 55/167 (32.93%), Postives = 82/167 (49.10%), Query Frame = 3
Query:  204 NNGQLLSLSLDKASGSGFQSKS-EY----LFGKIDMQLKLVPGNSAGTVTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPI-REFKNLESNGVLFPKNQPMRIYSSLW---NADDWATR 668
            +NG+++ L+LD+  G  +  KS EY     FG    ++++    + G V++++     S  + WDEID EFLG    D   +  N + NG G  E   +L FD + DFHTY   W P  I FYVDG  + R  +N+           P +I  +LW     D+W  R
Sbjct:   72 SNGKMI-LTLDREYGGSYPYKSGEYRTKSFFGYGYYEVRMKAAKNVGIVSSFFTYTGPSDNNPWDEIDIEFLGK---DTTKVQFNWYKNGVGGNEYLHNLGFDASQDFHTYGFEWRPDYIDFYVDGKKVYRGTRNIPVT--------PGKIMMNLWPGIGVDEWLGR 226          
BLAST of CK939832 vs. ExPASy Swiss-Prot
Match: GUB_BACAM (Beta-glucanase OS=Bacillus amyloliquefaciens GN=bglA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.101e-13
Identity = 54/175 (30.86%), Postives = 82/175 (46.86%), Query Frame = 3
Query:  165 FDITWGDGRGKILNNGQ----LLSLSLDKASGSGFQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWN---ADDW 659
            F+ TW      + + G+    L S S +K      +S   Y +G  ++++K  P  + G V++++     + G+ WDEID EFLG    D   +  N +TNG G+ E+   L FD    +HTY+  W P  I +YVDG        L+          P +I  +LWN    DDW
Sbjct:   55 FNCTWRANNVSMTSLGEMRLALTSPSYNKFDCGENRSVQTYGYGLYEVRMK--PAKNTGIVSSFFTYTGPTEGTPWDEIDIEFLGK---DTTKVQFNYYTNGAGNHEKFADLGFDAANAYHTYAFDWQPNSIKWYVDG-------QLKHTATTQIPAAPGKIMMNLWNGTGVDDW 217          
The following BLAST results are available for this feature:
BLAST of CK939832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
XTH29_ARATH1.746e-3539.69Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH11_ARATH4.756e-3338.65Probable xyloglucan endotransglucosylase/hydrolase... [more]
CRR1_YEAST6.240e-1732.24Probable glycosidase CRR1 OS=Saccharomyces cerevis... [more]
GUB_PAEPO8.150e-1731.46Beta-glucanase OS=Paenibacillus polymyxa GN=gluB P... [more]
GUB_PAEMA2.622e-1531.43Beta-glucanase OS=Paenibacillus macerans PE=1 SV=2[more]
GUB_ORPSP9.962e-1532.20Beta-glucanase OS=Orpinomyces sp. (strain PC-2) GN... [more]
GUB_BACSU6.457e-1430.29Beta-glucanase OS=Bacillus subtilis GN=bglS PE=1 S... [more]
GUB_BACLI6.457e-1430.68Beta-glucanase OS=Bacillus licheniformis GN=bg1 PE... [more]
GUB_CLOTH8.434e-1432.93Beta-glucanase OS=Clostridium thermocellum (strain... [more]
GUB_BACAM1.101e-1330.86Beta-glucanase OS=Bacillus amyloliquefaciens GN=bg... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004745_A03 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IF_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939832 ID=CK939832; Name=CK939832; organism=Citrus sinensis; type=EST; length=842bp
GGGGAACTCGCACACACATAAATACCAACCCTTATAAGCTGCTTTCTGGA
AACTCTCTCTTTATTGATTGCAGTACTATGGCTTACTCGAAAAATTTTAC
CCTGCTCATCTCTATAGCAATCAGCACTTTGATGGTTGCTTCTGCTAGTA
ATTTCTACCAAGACTTTGATATCACTTGGGGAGATGGCCGTGGTAAGATA
CTCAACAACGGCCAGCTTCTCTCCCTCTCCCTTGACAAAGCCTCAGGCTC
AGGCTTCCAGTCCAAGAGCGAGTACCTTTTTGGCAAAATCGACATGCAAC
TCAAGCTTGTCCCTGGCAATTCTGCCGGCACAGTCACCGCCTACTACTTA
AAATCACCAGGATCAACATGGGATGAGATAGACTTCGAATTCTTGGGGAA
TTTAAGTGGTGATCCTTATACTCTTCATACTAATGTGTTCACAAATGGCA
AAGGTGACAGAGAGCAACAATTCCACCTCTGGTTTGACCCCACTGCTGAC
TTTCACACCTATTCCGTTCTCTGGAATCCCCAACGTATTGTCTTCTATGT
TGATGGCTCGCCAATTAGAGAGTTCAAGAACTTGGAATCAAACGGCGTAC
TCTTTCCCAAAAACCAGCCGATGAGGATTTACTCGAGTCTCTGGAACGCC
GATGACTGGGCCACGAGAGGTGGCCTTATCAAAACTGACTGGACCCAAGC
TCCCTTCACTGCTTCTTACAGAAACTTCAATGCCAATGCTTGCGTCTGGT
CTAATGGAAAATCCTCTTGCAACTCAAAAAATAATAATCCATGGTTCTCG
CAAGAACTTGANNNCACTGGCCGAGAGAGACTCAAATGGGTG
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