CN188356

Overview
NameCN188356
Unique NameCN188356
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188356 vs. ExPASy Swiss-Prot
Match: DNJA1_PONAB (DnaJ homolog subfamily A member 1 OS=Pongo abelii GN=DNAJA1 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.392e-32
Identity = 76/174 (43.68%), Postives = 107/174 (61.49%), Query Frame = -3
Query:  228 DEAPDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDS--LTPDQVKALEAILPSRPLSGMTDMELDECEETTLHDVNIEEEMRRKQAHAQEAYEEDEDMPGGAQRVQC 743
            D+ P    GDI+ VL QK+H  F R+GEDLF    + L EALCGFQ  ++ LD R ++I S+PG++VK    K +  EGMP+Y+RP+ KG+L I F V FP++  L+PD++  LE +LP R     TD E+D+ E      V+ +    R++ +  EAYE+DE  P G   VQC
Sbjct:  228 DQEPGLEPGDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKLSLLEKLLPERKEVEETD-EMDQVEL-----VDFDPNQERRRHYNGEAYEDDEHHPRGG--VQC 393          
BLAST of CN188356 vs. ExPASy Swiss-Prot
Match: DNJA1_MOUSE (DnaJ homolog subfamily A member 1 OS=Mus musculus GN=Dnaja1 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.392e-32
Identity = 76/174 (43.68%), Postives = 107/174 (61.49%), Query Frame = -3
Query:  228 DEAPDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDS--LTPDQVKALEAILPSRPLSGMTDMELDECEETTLHDVNIEEEMRRKQAHAQEAYEEDEDMPGGAQRVQC 743
            D+ P    GDI+ VL QK+H  F R+GEDLF    + L EALCGFQ  ++ LD R ++I S+PG++VK    K +  EGMP+Y+RP+ KG+L I F V FP++  L+PD++  LE +LP R     TD E+D+ E      V+ +    R++ +  EAYE+DE  P G   VQC
Sbjct:  229 DQEPGLEPGDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKLSLLEKLLPERKEVEETD-EMDQVEL-----VDFDPNQERRRHYNGEAYEDDEHHPRGG--VQC 394          
BLAST of CN188356 vs. ExPASy Swiss-Prot
Match: DNJA1_HUMAN (DnaJ homolog subfamily A member 1 OS=Homo sapiens GN=DNAJA1 PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 3.392e-32
Identity = 76/174 (43.68%), Postives = 107/174 (61.49%), Query Frame = -3
Query:  228 DEAPDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDS--LTPDQVKALEAILPSRPLSGMTDMELDECEETTLHDVNIEEEMRRKQAHAQEAYEEDEDMPGGAQRVQC 743
            D+ P    GDI+ VL QK+H  F R+GEDLF    + L EALCGFQ  ++ LD R ++I S+PG++VK    K +  EGMP+Y+RP+ KG+L I F V FP++  L+PD++  LE +LP R     TD E+D+ E      V+ +    R++ +  EAYE+DE  P G   VQC
Sbjct:  229 DQEPGLEPGDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKLSLLEKLLPERKEVEETD-EMDQVEL-----VDFDPNQERRRHYNGEAYEDDEHHPRGG--VQC 394          
BLAST of CN188356 vs. ExPASy Swiss-Prot
Match: DNJA1_BOVIN (DnaJ homolog subfamily A member 1 OS=Bos taurus GN=DNAJA1 PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 3.392e-32
Identity = 76/174 (43.68%), Postives = 107/174 (61.49%), Query Frame = -3
Query:  228 DEAPDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDS--LTPDQVKALEAILPSRPLSGMTDMELDECEETTLHDVNIEEEMRRKQAHAQEAYEEDEDMPGGAQRVQC 743
            D+ P    GDI+ VL QK+H  F R+GEDLF    + L EALCGFQ  ++ LD R ++I S+PG++VK    K +  EGMP+Y+RP+ KG+L I F V FP++  L+PD++  LE +LP R     TD E+D+ E      V+ +    R++ +  EAYE+DE  P G   VQC
Sbjct:  229 DQEPGLEPGDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKLSLLEKLLPERKEVEETD-EMDQVEL-----VDFDPNQERRRHYNGEAYEDDEHHPRGG--VQC 394          
BLAST of CN188356 vs. ExPASy Swiss-Prot
Match: DNAJ1_CERAE (DnaJ homolog subfamily A member 1 OS=Cercopithecus aethiops GN=DNAJA1 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.430e-32
Identity = 75/174 (43.10%), Postives = 107/174 (61.49%), Query Frame = -3
Query:  228 DEAPDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDS--LTPDQVKALEAILPSRPLSGMTDMELDECEETTLHDVNIEEEMRRKQAHAQEAYEEDEDMPGGAQRVQC 743
            D+ P    GDI+ VL QK+H  F R+GEDLF    + L EALCGFQ  ++ LD R ++I S+PG++VK    K +  EGMP+Y+RP+ KG+L I F + FP++  L+PD++  LE +LP R     TD E+D+ E      V+ +    R++ +  EAYE+DE  P G   VQC
Sbjct:  229 DQEPGLEPGDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKINFPENGFLSPDKLSLLEKLLPERKEVEETD-EMDQVEL-----VDFDPNQERRRHYNGEAYEDDEHHPRGG--VQC 394          
BLAST of CN188356 vs. ExPASy Swiss-Prot
Match: DNJA2_RAT (DnaJ homolog subfamily A member 2 OS=Rattus norvegicus GN=Dnaja2 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.556e-32
Identity = 73/177 (41.24%), Postives = 101/177 (57.06%), Query Frame = -3
Query:  219 DEAPDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDS--LTPDQVKALEAILPSRPLSGMTDMELDECEETTLHDVNIEEEMRRKQAHAQEAYEEDEDMPGGAQRVQCAQQ 743
            D+AP    GDIV  +Q+KEH  F+R G DL   + + L EALCGFQF   HLD RQ+++K  PG+V++P   + +  EGMP Y+ PF KG LYI F V+FP++  + PD++  LE +LPSRP       E +E E             +R++A+   + EE     G    VQCA Q
Sbjct:  238 DQAPGVEPGDIVLFVQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLDARQIVVKYPPGKVIEPGCVRVVRGEGMPQYRNPFEKGDLYIKFDVQFPENNWINPDKLSELEDLLPSRPEVPNVIGETEEVELQEFDSTRGSGGGQRREAYNDSSDEESSSHHGPG--VQCAHQ 412          
BLAST of CN188356 vs. ExPASy Swiss-Prot
Match: MAS5_SCHPO (Mitochondrial protein import protein mas5 OS=Schizosaccharomyces pombe GN=SPBC1734.11 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.742e-28
Identity = 72/178 (40.45%), Postives = 97/178 (54.49%), Query Frame = -3
Query:  219 DEAPDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDS--LTPDQVKALEAILPSRPL-SGMTDMELDECEETTLHDVNIEEEMRRKQAHAQEAYEEDEDMPGGAQRVQCAQQ 743
            ++AP  + GD++FV+ QKEHP+FKR G+ LFYE  + L  AL G Q  + HLD R L I   PGE ++P+  K +  +GM L QR    G LYI F V+FP+    TP+Q+  LE  LP R + S   +   +EC   T+                  + +EDED  GG   VQCAQQ
Sbjct:  231 EQAPGIIPGDVIFVIDQKEHPRFKRSGDHLFYEAHVDLLTALAGGQIVVEHLDDRWLTIPIIPGECIRPNELKVLPGQGM-LSQRHHQPGNLYIRFHVDFPEPNFATPEQLALLEKALPPRKIESAPKNAHTEECVLATVDPTEKVRIDNNVDPTTATSMDEDEDEEGGHPGVQCAQQ 407          
BLAST of CN188356 vs. ExPASy Swiss-Prot
Match: DNJA4_MOUSE (DnaJ homolog subfamily A member 4 OS=Mus musculus GN=Dnaja4 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.068e-28
Identity = 70/175 (40.00%), Postives = 105/175 (60.00%), Query Frame = -3
Query:  225 DEAPDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDS--LTPDQVKALEAILPSRPLSGMTDMELDECEETTLHDVNIEEEMRRKQAHAQEAYEEDEDMPGGAQRVQCA 743
            D+ P+   GD++ VL QK+H  F+R+G+DL  +  + L+EALCGF+  +  LD R L+I S  GEV+K    K I  EGMP+Y+ P  KG + I F V FP+   L+ +++  LEA+LP R    +TD ++D+ E   L + N  E+  R+    +EAYEED++ P    + Q A
Sbjct:  230 DQEPELDPGDVIIVLDQKDHSVFQRRGQDLIMKMKIQLSEALCGFKKTIKTLDDRVLVISSKSGEVIKHGDLKCIRNEGMPIYKAPLEKGVMIIQFLVVFPEKQWLSQEKLPQLEALLPPRQKVRITD-DMDQVE---LKEFNPNEQSWRQH---REAYEEDDEEPRAGVQCQTA 397          
BLAST of CN188356 vs. ExPASy Swiss-Prot
Match: DNJA4_HUMAN (DnaJ homolog subfamily A member 4 OS=Homo sapiens GN=DNAJA4 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.318e-27
Identity = 70/175 (40.00%), Postives = 104/175 (59.43%), Query Frame = -3
Query:  225 DEAPDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDS--LTPDQVKALEAILPSRPLSGMTDMELDECEETTLHDVNIEEEMRRKQAHAQEAYEEDEDMPGGAQRVQCA 743
            D+ P+   GD++ VL QK+H  F+R+G DL  +  + L+EALCGF+  +  LD R L+I S  GEV+K    + + +EGMP+Y+ P  KG L I F V FP+   L+ +++  LEA+LP R    +TD ++D+ E   L +    E+  R+    +EAYEEDED P    + Q A
Sbjct:  230 DQEPELEPGDVIIVLDQKDHSVFQRRGHDLIMKMKIQLSEALCGFKKTIKTLDNRILVITSKAGEVIKHGDLRCVRDEGMPIYKAPLEKGILIIQFLVIFPEKHWLSLEKLPQLEALLPPRQKVRITD-DMDQVE---LKEFCPNEQNWRQH---REAYEEDEDGPQAGVQCQTA 397          
BLAST of CN188356 vs. ExPASy Swiss-Prot
Match: MAS5_YEAST (Mitochondrial protein import protein MAS5 OS=Saccharomyces cerevisiae GN=YDJ1 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.799e-24
Identity = 66/178 (37.08%), Postives = 100/178 (56.18%), Query Frame = -3
Query:  219 DEAPDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDS--LTPDQVKALEAILPSRPLSGM-TDMELDECEETTLHDVNIEEEMRRKQAHAQEAYEEDEDMPGGAQRVQCAQQ 743
            D+APD + GD+VF++ ++ H  FKR G+DL YE  + L  A+ G +FAL H+ G  L +   PGEV+ P   K I  +GMP+  +    G L I FT++FP++   + + +K LE ILP R +  +     +DEC    L D +  +  R + +     Y+ DE+  GG + VQCA Q
Sbjct:  237 DQAPDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI-PKYGGYGNLIIKFTIKFPENHFTSEENLKKLEEILPPRIVPAIPKKATVDEC---VLADFDPAKYNRTRASRGGANYDSDEEEQGG-EGVQCASQ 409          
The following BLAST results are available for this feature:
BLAST of CN188356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
DNJA1_PONAB3.392e-3243.68DnaJ homolog subfamily A member 1 OS=Pongo abelii ... [more]
DNJA1_MOUSE3.392e-3243.68DnaJ homolog subfamily A member 1 OS=Mus musculus ... [more]
DNJA1_HUMAN3.392e-3243.68DnaJ homolog subfamily A member 1 OS=Homo sapiens ... [more]
DNJA1_BOVIN3.392e-3243.68DnaJ homolog subfamily A member 1 OS=Bos taurus GN... [more]
DNAJ1_CERAE4.430e-3243.10DnaJ homolog subfamily A member 1 OS=Cercopithecus... [more]
DNJA2_RAT7.556e-3241.24DnaJ homolog subfamily A member 2 OS=Rattus norveg... [more]
MAS5_SCHPO1.742e-2840.45Mitochondrial protein import protein mas5 OS=Schiz... [more]
DNJA4_MOUSE5.068e-2840.00DnaJ homolog subfamily A member 4 OS=Mus musculus ... [more]
DNJA4_HUMAN7.318e-2740.00DnaJ homolog subfamily A member 4 OS=Homo sapiens ... [more]
MAS5_YEAST5.799e-2437.08Mitochondrial protein import protein MAS5 OS=Sacch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005O11_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005O11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188356 ID=CN188356; Name=CN188356; organism=Citrus sinensis; type=EST; length=757bp
TTTTTTTTTTTTTTTTTAAAAGAAGGCATTTCATTGCTTTAAAAAAATCT
AGTAAACAAAAAACACTGCAAACATCAAAGCGTCCACAGCTTTGAGCATC
AGACACATGTGCTATTCAAATTATCTTTCCTTAGTAAATAGGTACTGAAA
TTTAGCTTCATTTTAGTAAGCGTACAACAACTTAAACCACTTTCAATGAT
TGTTCTTCGCCATCATCACTGTTGGGCACACTGCACTCTCTGGGCACCAC
CAGGCATATCTTCGTCCTCCTCATATGCCTCTTGAGCATGAGCCTGCTTC
CTCCGCATCTCCTCCTCAATGTTGACATCATGCAATGTAGTCTCTTCACA
TTCATCTAGCTCCATGTCAGTCATCCCAGACAATGGCCTCGATGGGAGGA
TGGCCTCTAGGGCCTTAACCTGATCTGGGGTCAGAGAATCAGGGAATTCA
ACTGTGAAGTGAATGTACAGTTTCCCCTTCATGAACGGCCTCTGGTACAA
GGGCATACCCTCCTCATTGATAGCCTTGTATGAATCAGGCTTAACAACTT
CCCCAGGATTCGATTTAATCAGAAGTTGCCTCCCATCCAGATGAGTCAGT
GCAAACTGGAAACCGCAGAGGGCCTCAGTTAGCGACAAAGTATGCTCATA
AAAGAGATCTTCTCCCTTTCTCTTGAACTTTGGATGTTCCTTCTGCTGAA
GTACAAATACTATGTCTCCAGTGACTGTATCCGGCGCTTCATCTGGCTTC
ACCAGGG
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