CK939734
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_SHESA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shewanella sp. (strain ANA-3) GN=ispF PE=3 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 6.405e-36 Identity = 74/159 (46.54%), Postives = 103/159 (64.78%), Query Frame = 3 Query: 294 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMKK 770 + R+GHGFD+H+ PLI+ G+ VP+E G AHSDGDV+LH + DAILGA+ L DIG+ FPD+D +KGA S V ++ L G+E+GNLD T+I Q PK++P+ E +R L+ L AD +N+KA T EK+ G IA V+LL ++ Sbjct: 1 MKIRIGHGFDVHKFGEARPLILCGVEVPYETGLVAHSDGDVVLHAISDAILGAMALGDIGKHFPDTDAAYKGADSRVLLRHCYALARAKGFELGNLDVTIIAQAPKMAPHIEDMRQVLAADLNADIADINVKATTTEKLGFTGRKEGIAVEAVVLLSRQ 159
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_SHEON (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shewanella oneidensis GN=ispF PE=1 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 6.405e-36 Identity = 74/159 (46.54%), Postives = 103/159 (64.78%), Query Frame = 3 Query: 294 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMKK 770 + R+GHGFD+H+ PLI+ G+ VP+E G AHSDGDV+LH + DAILGA+ L DIG+ FPD+D +KGA S V ++ L G+E+GNLD T+I Q PK++P+ E +R L+ L AD +N+KA T EK+ G IA V+LL ++ Sbjct: 1 MKIRIGHGFDVHKFGEPRPLILCGVEVPYETGLVAHSDGDVVLHAISDAILGAMALGDIGKHFPDTDAAYKGADSRVLLRHCYALAKAKGFELGNLDVTIIAQAPKMAPHIEDMRQVLAADLNADVADINVKATTTEKLGFTGRKEGIAVEAVVLLSRQ 159
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_SERP5 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Serratia proteamaculans (strain 568) GN=ispF PE=3 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 6.405e-36 Identity = 74/156 (47.44%), Postives = 103/156 (66.03%), Query Frame = 3 Query: 303 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMKK 770 R+GHGFD+H+ PL+IGG+ +P+E+G AHSDGDV LH DA+LGA L DIG++FPD+DP +KGA S V ++EA + + GY +GNLD T+I Q PK++P+ +R L+E L VN+KA T E++ G IA V LL+K+ Sbjct: 2 RIGHGFDVHKFGGEGPLVIGGVRIPYEKGLLAHSDGDVALHAATDALLGAAALGDIGKLFPDTDPAFKGADSRVLLREAWKRIRAKGYRLGNLDITIIAQAPKMAPHIPQMRVFLAEDLQCHMDDVNVKATTTEQLGFTGRGEGIACEAVALLIKE 157
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_PSEPK (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudomonas putida (strain KT2440) GN=ispF PE=3 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 6.405e-36 Identity = 71/154 (46.10%), Postives = 106/154 (68.83%), Query Frame = 3 Query: 303 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLM 764 R+GHG+D+HR G + +GG+ +PH+ G AHSDGDVLLH + DA+LGA L DIG+ FPD+DP++KGA S ++ V ++ G+++GN+DAT++ Q PK++P+ ET+R ++E L + VN+KA T EK+ G IA H+V LL+ Sbjct: 2 RIGHGYDVHRFCDGDFITLGGVRIPHKYGLLAHSDGDVLLHALSDALLGAAALGDIGKHFPDTDPQFKGADSRALLRHVVGIVKAKGWKVGNVDATIVAQAPKMAPHIETMRQLIAEDLQVELDQVNVKATTTEKLGFTGREEGIAVHSVALLL 155
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_PSEP1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=ispF PE=3 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 6.405e-36 Identity = 71/154 (46.10%), Postives = 106/154 (68.83%), Query Frame = 3 Query: 303 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLM 764 R+GHG+D+HR G + +GG+ +PH+ G AHSDGDVLLH + DA+LGA L DIG+ FPD+DP++KGA S ++ V ++ G+++GN+DAT++ Q PK++P+ ET+R ++E L + VN+KA T EK+ G IA H+V LL+ Sbjct: 2 RIGHGYDVHRFCDGDFITLGGVRIPHKYGLLAHSDGDVLLHALSDALLGAAALGDIGKHFPDTDPQFKGADSRALLRHVVGIVKAKGWKVGNVDATIVAQAPKMAPHIETMRQLIAEDLQVELDQVNVKATTTEKLGFTGREEGIAVHSVALLL 155
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_HAES1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Haemophilus somnus (strain 129Pt) GN=ispF PE=3 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 6.405e-36 Identity = 72/156 (46.15%), Postives = 106/156 (67.95%), Query Frame = 3 Query: 303 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMKK 770 R+GHGFD+H P+IIGG+ +P+E+G AHSDGDV LH + DA+LGA+ L DIG++FPD+D ++KGA S ++ A + + + GY++GN+D T+I Q PK+ PY + +RT +++ L D VN+KA T EK+ G IA V LL+K+ Sbjct: 3 RIGHGFDVHAFGGEGPIIIGGVAIPYEKGLVAHSDGDVALHALTDALLGAMALGDIGKLFPDTDIQYKGADSRRLLRTAYQAILDKGYQVGNVDITIIAQAPKMRPYIDAMRTVIAQDLHCDIEQVNVKATTTEKLGFTGRSEGIACEAVALLIKQ 158
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_EDWI9 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Edwardsiella ictaluri (strain 93-146) GN=ispF PE=3 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 6.405e-36 Identity = 77/156 (49.36%), Postives = 100/156 (64.10%), Query Frame = 3 Query: 303 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMKK 770 R+GHGFD+HR PLIIGG+ + H +G AHSDGDV LH DA+LGA L DIG++FPD+DP +KGA S ++EA R + GY +GNLD TLI Q PK++P+ +R L+E L VN+KA T EK+ G IA V LL+K+ Sbjct: 2 RIGHGFDVHRFGGEGPLIIGGVRIAHPQGLLAHSDGDVALHAATDALLGAAALGDIGKLFPDTDPAYKGADSRALLREAYRSIRARGYRLGNLDITLIAQAPKMAPHIPQMRVFLAEDLQCPIDDVNVKATTTEKLGFTGRGEGIACAAVALLIKE 157
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_XYLFT (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=ispF PE=3 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 8.365e-36 Identity = 72/158 (45.57%), Postives = 102/158 (64.56%), Query Frame = 3 Query: 294 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMK 767 L R+G G+D+H P +++GG+ VPH G AHSDGDV+LH + DA+LGALGL DIGQ FP SD +WKGA S VF++ L+ E + +GN+DAT I + PK++PY +R ++ LL P V++KA T E + +G +AA V+LL + Sbjct: 13 LNVRIGQGYDVHAFGPSDHVMLGGVRVPHRCGVLAHSDGDVILHALCDAMLGALGLGDIGQHFPPSDVRWKGADSGVFVRHCNLLLRERDWCVGNVDATAICESPKIAPYVNAMREGIARLLEVQPECVSVKATTSEGLGFIGRGEGLAAQVVVLLYR 170
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_SHISS (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shigella sonnei (strain Ss046) GN=ispF PE=3 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 8.365e-36 Identity = 74/155 (47.74%), Postives = 101/155 (65.16%), Query Frame = 3 Query: 303 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMK 767 R+GHGFD+H P+IIGG+ +P+E+G AHSDGDV LH + DA+LGA L DIG++FPD+DP +KGA S ++EA R + GY +GN+D T+I Q PK+ P+ +R ++E LG VN+KA T EK+ G IA V LL+K Sbjct: 2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIK 156
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_SHIFL (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shigella flexneri GN=ispF PE=3 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 8.365e-36 Identity = 74/155 (47.74%), Postives = 101/155 (65.16%), Query Frame = 3 Query: 303 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMK 767 R+GHGFD+H P+IIGG+ +P+E+G AHSDGDV LH + DA+LGA L DIG++FPD+DP +KGA S ++EA R + GY +GN+D T+I Q PK+ P+ +R ++E LG VN+KA T EK+ G IA V LL+K Sbjct: 2 RIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIK 156 The following BLAST results are available for this feature:
BLAST of CK939734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CK939734 ID=CK939734; Name=CK939734; organism=Citrus sinensis; type=EST; length=877bpback to top |