CK939734
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_GEOMG (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=ispF PE=3 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 2.352e-38 Identity = 76/156 (48.72%), Postives = 110/156 (70.51%), Query Frame = 3 Query: 303 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMKK 770 R+GHG+D+H L G LI+GG++VP+ERG HSD DVLLH + DAILGAL L DIG+ FPD+DP++KGA S ++ + L + GY +GN+DAT++ QRPKL+P+ +R NL+E L A+ +N+KA T E++ G IAA+ V+L+ ++ Sbjct: 2 RIGHGYDVHCLVEGRKLILGGVDVPYERGLLGHSDADVLLHAIADAILGALALGDIGKHFPDTDPQFKGADSRKLLRHVMALAGQKGYVLGNVDATIVAQRPKLAPFIPEMRANLAEDLIAEIDRINVKATTTEQLGFAGRGEGIAAYAVVLMERR 157
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_RALEJ (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ralstonia eutropha (strain JMP134) GN=ispF PE=3 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 3.072e-38 Identity = 77/160 (48.12%), Postives = 110/160 (68.75%), Query Frame = 3 Query: 294 LPF--RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMK 767 +PF RVG G+D+H L PG LI+GG+++PH+RG HSD D LLH + DA+ GA GL DIG+ FPD+D ++ GA S V ++EA R + EAGYEIGN+DA++I Q+PKL+P+ + N+++ LG T N+KAKT+EK+ G I A +L+ + Sbjct: 2 MPFDIRVGQGYDVHALVPGRKLILGGVHIPHDRGLLGHSDADALLHAITDALFGAAGLGDIGRHFPDTDAQFAGADSRVLLREAARRVREAGYEIGNVDASVIAQQPKLAPHIPGMVANIADDLGLPATRCNVKAKTNEKLGFEGRQEGIVAQAAVLIWR 161
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_PSEAB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=ispF PE=3 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 3.072e-38 Identity = 73/156 (46.79%), Postives = 108/156 (69.23%), Query Frame = 3 Query: 303 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMKK 770 R+GHG+D+HR G + +GG+ +PH+ G AHSDGDVLLH + DA+LGA L DIG+ FPD+DP++KGA S ++ V ++ E G+++GN+DAT++ Q PK++P+ ET+R +++E LG VN+KA T E++ G IA H V LLM + Sbjct: 2 RIGHGYDVHRFGEGDFITLGGVRIPHKHGLVAHSDGDVLLHALSDALLGAAALGDIGKHFPDTDPRFKGADSRALLRHVVAIVAEKGWKVGNVDATIVAQAPKMAPHIETMRGSIAEDLGVAVDQVNVKATTTERLGFTGREEGIAVHAVALLMAR 157
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_PROMH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Proteus mirabilis (strain HI4320) GN=ispF PE=3 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 5.239e-38 Identity = 75/156 (48.08%), Postives = 106/156 (67.95%), Query Frame = 3 Query: 303 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMKK 770 R+GHG+D+H+ P+IIGG+ +P+E+G AHSDGDV+LH V DAILGA+ + DIG +FPD+DP +KGA S V ++EA + GY IGNLD T+I Q PK+ P+ +R N++E L +N+KA T EK+ +G IA V+LL+K+ Sbjct: 2 RIGHGYDVHKFGGEGPIIIGGVRIPYEQGLLAHSDGDVVLHAVTDAILGAVAMGDIGTLFPDTDPAYKGADSRVLLREAFSRVMAKGYRIGNLDVTIIAQAPKMLPHTPQMRVNIAEDLHCHVDDINVKATTTEKLGFVGRKEGIACEAVVLLIKE 157
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_PECCP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=ispF PE=3 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 5.239e-38 Identity = 77/156 (49.36%), Postives = 107/156 (68.59%), Query Frame = 3 Query: 303 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMKK 770 R+GHGFD+H+ PL+IGG+ +P+ +G AHSDGDV+LH V DA+LGA L DIG++FPD+DP +KGA S ++EA R ++E GY++GNLD T+I Q PK++P+ +R NL+E L VN+KA T E++ G IA V LL+KK Sbjct: 2 RIGHGFDVHKFGGEGPLVIGGVRIPYTQGLLAHSDGDVVLHAVTDALLGAAALGDIGKLFPDTDPAFKGADSRGLLREAWRRINEKGYQLGNLDVTIIAQAPKMAPHIPQMRVNLAEDLLCHMDDVNVKATTTEQLGFTGRGEGIACEAVALLVKK 157
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_ERWCT (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Erwinia carotovora subsp. atroseptica GN=ispF PE=3 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 6.843e-38 Identity = 76/156 (48.72%), Postives = 107/156 (68.59%), Query Frame = 3 Query: 303 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMKK 770 R+GHGFD+H+ PL+IGG+ +P+ +G AHSDGDV+LH V DA+LGA L DIG++FPD+DP +KGA S ++EA R +++ GY++GNLD T+I Q PK++P+ +R NL+E L VN+KA T E++ G IA V LL+KK Sbjct: 2 RIGHGFDVHKFGGEGPLVIGGVRIPYTQGLLAHSDGDVVLHAVTDALLGAAALGDIGKLFPDTDPAFKGADSRGLLREAWRRINDKGYQLGNLDVTIIAQAPKMAPHIPQMRVNLAEDLQCHMDDVNVKATTTEQLGFTGRGEGIACEAVALLVKK 157
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_BRAHW (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) GN=ispF PE=3 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 6.843e-38 Identity = 75/155 (48.39%), Postives = 106/155 (68.39%), Query Frame = 3 Query: 303 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMK 767 R+G+G+D H LI+ GI +P+E G + HSD D ++H ++D+ILGAL L DIG FPD+D K+KG S V +++ V +M+E YEI N D T+IL++PKL Y +T+R NLS++L D V++KAKT+EK+DS+G IA H V LL K Sbjct: 2 RIGYGYDSHAFAENRKLILSGIEIPYELGLKGHSDADAVIHALIDSILGALALGDIGSHFPDNDSKYKGISSIVLLEKTVSIMEEKNYEISNTDITIILEKPKLRNYIDTMRENLSKILKTDIENVSIKAKTNEKMDSIGRGEGIAVHCVSLLKK 156
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_BACLD (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=ispF PE=3 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 6.843e-38 Identity = 76/156 (48.72%), Postives = 106/156 (67.95%), Query Frame = 3 Query: 300 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMK 767 FR+G GFD+H+L G PLIIGGI +P+E+G HSD DVLLH + DA LGA+G DIG+ FPD+DP++K A S ++ ++ E GY +GNLD T+I Q+PK++PY E +R ++E L A+ + +N+KA T EK+ G IAA +LL K Sbjct: 2 FRIGQGFDVHQLVEGRPLIIGGITIPYEKGLLGHSDADVLLHTIADACLGAVGEGDIGKHFPDTDPEFKDADSFKLLRHVWMIVKEKGYTLGNLDCTIIAQKPKMAPYIEDMRARIAEGLEAEISQINVKATTTEKLGFTGRAEGIAAQASVLLQK 157
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_THEEB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thermosynechococcus elongatus (strain BP-1) GN=ispF PE=3 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 8.937e-38 Identity = 73/156 (46.79%), Postives = 103/156 (66.03%), Query Frame = 3 Query: 294 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILL 761 + R+G+G+D+HRL P PLI+GGI + H G HSD DVL H ++DA+LGAL L DIG FP SDP+W GA S V + + L+ E G+ +GN+DA ++ +RPKL PY + +R L+ LG D +++KA T+EK+ +G IAA+ V LL Sbjct: 2 MKIRIGNGYDIHRLVPERPLILGGIRLEHACGLLGHSDADVLTHAIMDALLGALSLGDIGHYFPPSDPQWAGADSQVLLAKVAALIAERGWRVGNIDAVVVAERPKLKPYLDPMRDRLATTLGIDRDQISIKATTNEKLGPVGREEGIAAYAVALL 157
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_SOLUE (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Solibacter usitatus (strain Ellin6076) GN=ispF PE=3 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 8.937e-38 Identity = 78/155 (50.32%), Postives = 103/155 (66.45%), Query Frame = 3 Query: 303 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMK 767 R G G+D+HR+ G +I+GG+ VP E G E HSD DVL H + DAILGA L DIG FPDSDP+WKG S VF++ A L + GY I N+D+T+IL+RPKL +++TIR L+E L D V++K KT EKV +GE RS + ++ L K Sbjct: 5 RTGLGWDVHRIATGRKMILGGVTVPCEFGLEGHSDADVLAHAITDAILGAAALGDIGMHFPDSDPRWKGCDSLVFLRHARDLATQKGYRIVNVDSTIILERPKLKDFRQTIRERLAETLELDVDRVSVKFKTAEKVGPVGEGRSAESQAIVTLEK 159 The following BLAST results are available for this feature:
BLAST of CK939734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939734 ID=CK939734; Name=CK939734; organism=Citrus sinensis; type=EST; length=877bpback to top |