CK939734

Overview
NameCK939734
Unique NameCK939734
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_PSEPW (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudomonas putida (strain W619) GN=ispF PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 8.937e-38
Identity = 74/154 (48.05%), Postives = 107/154 (69.48%), Query Frame = 3
Query:  303 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLM 764
            R+GHG+D+HR   G  + +GG+ +PH+ G  AHSDGDVLLH + DA+LGA GL DIG+ FPD+DP++KGA S V ++  V ++   G+++GN+DAT++ Q PK+SP+ ET+R  ++E L  +   VN+KA T EK+   G    IA H V LL+
Sbjct:    2 RIGHGYDVHRFCDGDFITLGGVRIPHKYGLLAHSDGDVLLHALSDALLGAAGLGDIGKHFPDTDPQFKGADSRVLLRHVVGIVQAKGWKVGNVDATIVAQAPKMSPHIETMRQRIAEDLQVELDQVNVKATTTEKLGFTGREEGIAVHAVALLL 155          
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_PSEAE (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudomonas aeruginosa GN=ispF PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 8.937e-38
Identity = 73/156 (46.79%), Postives = 107/156 (68.59%), Query Frame = 3
Query:  303 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMKK 770
            R+GHG+D+HR   G  + +GG+ +PH+ G  AHSDGDVLLH + DA+LGA  L DIG+ FPD+DP++KGA S   ++  V ++ E G+++GN+DAT++ Q PK++P+ ET+R  ++E LG     VN+KA T E++   G    IA H V LLM +
Sbjct:    2 RIGHGYDVHRFGEGDFITLGGVRIPHKHGLVAHSDGDVLLHALSDALLGAAALGDIGKHFPDTDPRFKGADSRALLRHVVAIVAEKGWKVGNVDATIVAQAPKMAPHIETMRGLIAEDLGVAVDQVNVKATTTERLGFTGREEGIAVHAVALLMAR 157          
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_PSEA8 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudomonas aeruginosa (strain LESB58) GN=ispF PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 8.937e-38
Identity = 73/156 (46.79%), Postives = 107/156 (68.59%), Query Frame = 3
Query:  303 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMKK 770
            R+GHG+D+HR   G  + +GG+ +PH+ G  AHSDGDVLLH + DA+LGA  L DIG+ FPD+DP++KGA S   ++  V ++ E G+++GN+DAT++ Q PK++P+ ET+R  ++E LG     VN+KA T E++   G    IA H V LLM +
Sbjct:    2 RIGHGYDVHRFGEGDFITLGGVRIPHKHGLVAHSDGDVLLHALSDALLGAAALGDIGKHFPDTDPRFKGADSRALLRHVVAIVAEKGWKVGNVDATIVAQAPKMAPHIETMRGLIAEDLGVAVDQVNVKATTTERLGFTGREEGIAVHAVALLMAR 157          
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_PSEA7 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Pseudomonas aeruginosa (strain PA7) GN=ispF PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 8.937e-38
Identity = 73/156 (46.79%), Postives = 107/156 (68.59%), Query Frame = 3
Query:  303 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMKK 770
            R+GHG+D+HR   G  + +GG+ +PH+ G  AHSDGDVLLH + DA+LGA  L DIG+ FPD+DP++KGA S   ++  V ++ E G+++GN+DAT++ Q PK++P+ ET+R  ++E LG     VN+KA T E++   G    IA H V LLM +
Sbjct:    2 RIGHGYDVHRFGEGDYITLGGVRIPHKHGLVAHSDGDVLLHALSDALLGAAALGDIGKHFPDTDPRFKGADSRALLRHVVAIVAEKGWKVGNVDATIVAQAPKMAPHIETMRGLIAEDLGVALDQVNVKATTTERLGFTGREEGIAVHAVALLMAR 157          
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_HAHCH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Hahella chejuensis (strain KCTC 2396) GN=ispF PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 8.937e-38
Identity = 73/155 (47.10%), Postives = 103/155 (66.45%), Query Frame = 3
Query:  300 FRVGHGFDLHRL-EPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILL 761
            FR+GHGFD+H   E G  ++IGG+N+PHERG +AHSDGDVLLH + DA+LGA    DIG+ FPD+DP + GA S   ++  V  + + GY+IGN+D T++ Q PK++P+ E++R N++         +N+KA T EK+   G    IA H V LL
Sbjct:    4 FRIGHGFDVHAFSETGDLIVIGGVNIPHERGLQAHSDGDVLLHAICDALLGAAAFGDIGKHFPDTDPSFSGADSRNLLRSVVSKLHQKGYKIGNIDGTIVAQAPKMAPHIESMRVNIASDCNVSIDCINVKATTTEKLGYTGRKEGIACHAVALL 158          
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_RALSO (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ralstonia solanacearum GN=ispF PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.167e-37
Identity = 75/158 (47.47%), Postives = 105/158 (66.46%), Query Frame = 3
Query:  294 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMK 767
            +  R+G G+D+H L  G  LI+GG+ +PH RG   HSD D LLH + DA+ GA GL DIG+ FPD+DP + GA S V ++EAVR + EAGY++GN+DAT+I Q+PKL+P+   +  NL+  LG  P   N+KAKT+EK+   G    I A   +L+ +
Sbjct:    4 MDIRIGQGYDVHALVEGRKLILGGVEIPHTRGLLGHSDADALLHAITDALFGAAGLGDIGRHFPDTDPAFAGADSRVLLREAVRRVREAGYDVGNVDATVIAQKPKLAPHVPGMVANLAADLGIAPGRCNVKAKTNEKLGFEGREDGIVAQAAVLIYR 161          
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_RALEH (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=ispF PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.167e-37
Identity = 80/160 (50.00%), Postives = 106/160 (66.25%), Query Frame = 3
Query:  294 LPF--RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMK 767
            +PF  RVG G+D+H L PG  LI+GG+ +PH+RG   HSD D LLH V DA+ GA  L DIG+ FPD+D ++ GA S V ++EA R + EAGYEIGN+DAT+I Q PKL+P+   +  NL+E LG      N+KAKT+EK+   G    I A   +LL +
Sbjct:    2 MPFDIRVGQGYDVHALVPGRKLILGGVEIPHDRGLLGHSDADALLHAVTDALFGAAALGDIGRHFPDTDAQFAGADSRVLLREAARRVREAGYEIGNVDATVIAQAPKLAPHIGAMVANLAEDLGIARGRCNVKAKTNEKLGFEGRQEGIVAQAAVLLWR 161          
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_GEOKA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Geobacillus kaustophilus GN=ispF PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.167e-37
Identity = 77/156 (49.36%), Postives = 104/156 (66.67%), Query Frame = 3
Query:  300 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMK 767
            FR+G GFD+H+L  G PLIIGG+ +P+E+G   HSD DVLLH V DA LGA+G  DIG+ FPD+DP++K A S+  +     L  + GY + N D T+I Q+PKL+PY E +R  ++ LL A+ + VN+KA T EK+   G    IAA  V+LL K
Sbjct:    2 FRIGQGFDVHQLVEGRPLIIGGVTIPYEKGLLGHSDADVLLHAVADACLGAIGAGDIGRHFPDTDPRFKDADSAELLAHVWALARQEGYRLVNADCTIIAQKPKLAPYIEEMRAVIARLLEAERSQVNVKATTTEKLGFTGRGEGIAAQAVVLLQK 157          
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_FUSNN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Fusobacterium nucleatum subsp. nucleatum GN=ispF PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.167e-37
Identity = 71/156 (45.51%), Postives = 110/156 (70.51%), Query Frame = 3
Query:  303 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMKK 770
            R+G+G+D+H+L  G  L++GG+ VPH +G   HSDGDVLLH + DAI+GALGL DIG  FPD+D   K   S++ +K+   +M E  Y+I NLD+ +++Q+PKL PY ++IR N++++L  +  ++N+KAKT EK+   G+   + ++ V+LL KK
Sbjct:    3 RIGNGYDVHKLVEGRKLMLGGVEVPHTKGVLGHSDGDVLLHAITDAIIGALGLGDIGLHFPDNDENLKDIDSAILLKKINNIMKEKNYKIVNLDSIIVMQKPKLRPYIDSIRDNIAKILEINSELINVKAKTEEKLGFTGDETGVKSYCVVLLEKK 158          
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_BURTA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=ispF PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.524e-37
Identity = 73/159 (45.91%), Postives = 108/159 (67.92%), Query Frame = 3
Query:  294 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMKK 770
            + FR+G G+D+H+L PG PLIIGG+ +P+ERG   HSD DVLLH + DA+ GA  L DIG+ F D+DP++KGA S   ++E    + +AG+ I N+D+T+I Q PKL+P+ + +R N++  LG     VN+KAKT+EK+  LG    I A    L++++
Sbjct:    1 MDFRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFSDTDPRFKGADSRALLRECAARVAQAGFSIRNVDSTIIAQAPKLAPHIDAMRANIAADLGLPLDRVNVKAKTNEKLGYLGRGEGIEAQAAALVVRE 159          
The following BLAST results are available for this feature:
BLAST of CK939734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_PSEPW8.937e-3848.052-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PSEAE8.937e-3846.792-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PSEA88.937e-3846.792-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PSEA78.937e-3846.792-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_HAHCH8.937e-3847.102-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_RALSO1.167e-3747.472-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_RALEH1.167e-3750.002-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_GEOKA1.167e-3749.362-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_FUSNN1.167e-3745.512-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BURTA1.524e-3745.912-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004746_D02 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIF_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939734 ID=CK939734; Name=CK939734; organism=Citrus sinensis; type=EST; length=877bp
GGGGATATCGAGCAGACAGCAGAGCACGAACAGCGTCTCTCCTCTCTTCG
TAAAATTAGATGGTGTTGACGATGGCCGCTCAATCATACACCACCACTCC
TCTCCACAGCAAAATTACGAATAAGCCACTATGTCCTCCTCCGTTGAGTT
TGAAGCCTCGTAGCTTAACCGCCAAACATCTCCGCACAACACAGTCAACG
TCGCTGCCTCGTATTTCAGTTTCAGCTGCAGCCATTTCTTCCATCGAAGT
TAAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCAAAATCACTGCCTT
TTCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGAGCCTGGCTACCCT
CTGATCATCGGTGGAATCAATGTTCCCCACGAGAGAGGCTGCGAGGCTCA
CTCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGATGCAATTTTGGGAG
CATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGATTCTGATCCTAAG
TGGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAGCTGTGAGACTCAT
GGATGAGGCCGGCTATGAGATTGGCAACTTGGATGCCACGCTGATTCTTC
AAAGACCAAAATTGAGCCCATACAAGGAGACTATCCGAACCAACTTGTCT
GAACTGCTAGGAGCAGACCCCACCGTTGTAAATCTGAAAGCGAAGACTCA
TGAAAAAGTTGATAGCCTTGGTGAANNNCGAAGTATTGCAGCTCACACTG
TGATCCTTCTCATGAAGAAGTAAAATAAACGATTTGGGAATTGTCTTAAA
TGTAGCAGTTGTATCCTATTATCATTGTTGTATTTGTATTCTGCTTACAA
AGACTATTCACTTGGTATAGATTTCCA
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