CK939734
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_MYCA1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium avium (strain 104) GN=ispF PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 7.601e-21 Identity = 54/154 (35.06%), Postives = 81/154 (52.60%), Query Frame = 3 Query: 303 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLM 764 R+G G D+H ++PG P + G+ GC HSDGDV H + DA+L A GL D+G +F DP+W G + ++ L G+ +GN +I RPK+ P + + LSELLGA V++ A T + + G +AA L++ Sbjct: 6 RIGLGVDVHPIQPGRPCRLLGLLFDDADGCAGHSDGDVGAHALCDAVLSAAGLGDVGAVFGVDDPRWAGVSGADMLRHVADLTARHGFRVGNAAVQVIGNRPKVGPRRAEAQRVLSELLGAP---VSVAATTTDGLGLTGRGEGLAAIATALVV 156
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPDF_CLAM3 (Bifunctional enzyme ispD/ispF OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=ispDF PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 2.211e-20 Identity = 57/153 (37.25%), Postives = 81/153 (52.94%), Query Frame = 3 Query: 303 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILL 761 R G G D+H ++ PL + G++ P E G HSDGD + H + DA+L A GL DIG IF DP+ GA VF++ L+ +AGY I N+ ++ RPKLSP + LS +GA V+L T + + G +AA L+ Sbjct: 258 RSGIGTDVHAVDASQPLWLAGLHWPGEAGLAGHSDGDAVSHAMCDALLSAAGLGDIGGIFGTDDPELDGAHGEVFLRRTAELVRDAGYRIVNVAVQVMAVRPKLSPRRAEAERILSAAVGAP---VSLAGTTTDGLGFTGRGDGVAAVATALV 407
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_CORGL (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Corynebacterium glutamicum GN=ispF PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 8.404e-20 Identity = 55/151 (36.42%), Postives = 78/151 (51.66%), Query Frame = 3 Query: 303 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVI 755 RVG D H++E G P I + GCE HSDGDV+ H +VDA+L A GL D+G P++ G + +KE L+ GY IGN+ A L+ Q PK P +E + +SE++GA P ++ H E R+ A V+ Sbjct: 8 RVGIATDAHQIEAGKPCWIACLLFEGVDGCEGHSDGDVVAHAIVDALLSASGLGDLGSFVGVGRPEYDGVSGTQLLKEVRELLSAHGYVIGNVAAQLVGQTPKFGPRREEAQQVISEIIGA-PCSLSATTTDHMGFTGRSEGRASVATAVV 157
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_PROAC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Propionibacterium acnes GN=ispF PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.433e-19 Identity = 52/151 (34.44%), Postives = 81/151 (53.64%), Query Frame = 3 Query: 294 LPFRVGHGFDLHRLEPGYPLIIGGINVPHER-GCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAA 743 + R G G D+H+L G P+ + G++ P E G HSDGDV H + DA+L A GL DIG IF +DP+W GA + V L+ G+ I N+ ++ QRP+++ + L++ +GA V++ A T + + G +AA Sbjct: 2 IEIRTGIGTDVHQLSAGVPMHVAGLSFPDETVGLVGHSDGDVACHAICDALLSATGLGDIGSIFGTADPQWAGAAGVALLGHVVALVTGEGWTIQNVAVQVVGQRPRMAARRAEAEAALAQTVGAP---VSVSATTTDHLGFTGRGEGVAA 149
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_CORGB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Corynebacterium glutamicum (strain R) GN=ispF PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.433e-19 Identity = 53/151 (35.10%), Postives = 79/151 (52.32%), Query Frame = 3 Query: 303 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVI 755 RVG D H++E G P I + GCE HSDGDV+ H +VDA+L A GL D+G P++ G + +KE L++ G+ IGN+ A L+ Q PK P +E + +S+++GA P ++ H E R+ A V+ Sbjct: 8 RVGIATDAHQIEAGKPCWIACLLFEGVDGCEGHSDGDVIAHAIVDALLSASGLGDLGSFVGVGRPEYDGVSGTQLLKEVRELLESRGFVIGNVAAQLVGQTPKFGPRREEAQQVISDIIGA-PCSLSATTTDHMGFTGRSEGRASVATAVV 157
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_FRASC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Frankia sp. (strain CcI3) GN=ispF PE=3 SV=2) HSP 1 Score: 95.5153 bits (236), Expect = 4.171e-19 Identity = 54/155 (34.84%), Postives = 82/155 (52.90%), Query Frame = 3 Query: 303 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMK 767 RVG G D+H G P + + P E G HSDGDV H DA+L A L D+G++F P++ GA +V + E RL+ AG+ IGN+ +I RP+++ +E + +S LGA V+L A T + + G +AA L+++ Sbjct: 8 RVGVGVDVHPFAAGRPCWVACLEWPGETGLAGHSDGDVAAHAACDALLTASCLGDLGRVFGTDRPEYAGASGAVLLAETARLLGAAGWAIGNVSVQVIGNRPRMAGRREDAQKAMSVALGAS---VSLSATTTDGLGLTGRGEGLAAIATALVIR 159
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_KOSOT (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Kosmotoga olearia (strain TBF 19.5.1) GN=ispF PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 5.447e-19 Identity = 59/158 (37.34%), Postives = 91/158 (57.59%), Query Frame = 3 Query: 300 FRVGHGFDLHRLEPGYP-LIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAG-YEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMK 767 +RVG GFD H LE L +GG+ V E HSDGD L+H +VDAILGA +IG FP+++ +G S+ F+ E +R AG YEI N+D+ +I+ + +++P+ E IR L+ +LG +N+K K+ + S++ + V +L K Sbjct: 2 YRVGIGFDAHPLEANKKGLYLGGVKVSEEYSSIGHSDGDALIHAIVDAILGATNAGNIGIWFPENEEN-RGRRSTEFL-EIIRKKILAGKYEILNIDSVIIIDKVRMNPHIENIRLKLARILGISKGNINVKPKSGNTL----YGNSVSVYAVCMLKK 153
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_COREF (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Corynebacterium efficiens GN=ispF PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 5.447e-19 Identity = 54/151 (35.76%), Postives = 78/151 (51.66%), Query Frame = 3 Query: 303 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVI 755 RVG D H++E G P I + GCE HSDGDV+ H +VDA+L A GL D+G P++ G + + E L+ G+ IGN+ A L+ Q PK P +E + +S++LGA P ++ H GE R+ A V+ Sbjct: 19 RVGIASDAHQIEAGKPCWIACLLFDGVDGCEGHSDGDVVAHAIVDALLSASGLGDLGSFVGVGRPEYDGVSGTQLLIEVRELLITRGFTIGNVAAQLVGQTPKFGPRREEAQQVISDILGA-PCFLSATTTDHMGFTGRGEGRAALATAVV 168
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_FRASN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Frankia sp. (strain EAN1pec) GN=ispF PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 7.114e-19 Identity = 53/155 (34.19%), Postives = 79/155 (50.97%), Query Frame = 3 Query: 303 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMK 767 RVG G D+H E G + + P E G HSDGDV H DA+L A G+ D+G +F P+W GA + + E RL+ E G+ IGN+ ++ RP+++ + + +S LGA VNL A T + + G +AA L+ + Sbjct: 8 RVGTGVDVHPFEQGRECWVACLLWPGETGLAGHSDGDVASHAACDALLTASGIGDLGAVFGTGRPEWSGASGAALLGETARLLAEGGWLIGNVAVQVVGNRPRMAARRVEAQEAMSAALGAP---VNLSATTTDGLGLTGRGEGLAAIATALVTR 159
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_FRAAA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Frankia alni (strain ACN14a) GN=ispF PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 1.213e-18 Identity = 53/155 (34.19%), Postives = 81/155 (52.26%), Query Frame = 3 Query: 303 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMK 767 RVG G D+H G P + + P E G HSDGDV H DA+L A L D+G++F P++ GA +V + E RL+ G+ IGN+ +I RP+++ +E + +S LGA V+L A T + + G +AA L+++ Sbjct: 8 RVGIGVDVHPFAAGRPCWVACLEWPGETGLAGHSDGDVAAHATCDALLTASCLGDLGKVFGTDRPEYAGASGAVLLAETARLLAVGGWVIGNVSVQVIGNRPRMAARREQAQAAMSAALGAS---VSLSATTTDGLGLTGRGEGLAAIATALVVR 159 The following BLAST results are available for this feature:
BLAST of CK939734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939734 ID=CK939734; Name=CK939734; organism=Citrus sinensis; type=EST; length=877bpback to top |