CK939734

Overview
NameCK939734
Unique NameCK939734
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_MYCA1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Mycobacterium avium (strain 104) GN=ispF PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.601e-21
Identity = 54/154 (35.06%), Postives = 81/154 (52.60%), Query Frame = 3
Query:  303 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLM 764
            R+G G D+H ++PG P  + G+      GC  HSDGDV  H + DA+L A GL D+G +F   DP+W G   +  ++    L    G+ +GN    +I  RPK+ P +   +  LSELLGA    V++ A T + +   G    +AA    L++
Sbjct:    6 RIGLGVDVHPIQPGRPCRLLGLLFDDADGCAGHSDGDVGAHALCDAVLSAAGLGDVGAVFGVDDPRWAGVSGADMLRHVADLTARHGFRVGNAAVQVIGNRPKVGPRRAEAQRVLSELLGAP---VSVAATTTDGLGLTGRGEGLAAIATALVV 156          
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPDF_CLAM3 (Bifunctional enzyme ispD/ispF OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=ispDF PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.211e-20
Identity = 57/153 (37.25%), Postives = 81/153 (52.94%), Query Frame = 3
Query:  303 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILL 761
            R G G D+H ++   PL + G++ P E G   HSDGD + H + DA+L A GL DIG IF   DP+  GA   VF++    L+ +AGY I N+   ++  RPKLSP +      LS  +GA    V+L   T + +   G    +AA    L+
Sbjct:  258 RSGIGTDVHAVDASQPLWLAGLHWPGEAGLAGHSDGDAVSHAMCDALLSAAGLGDIGGIFGTDDPELDGAHGEVFLRRTAELVRDAGYRIVNVAVQVMAVRPKLSPRRAEAERILSAAVGAP---VSLAGTTTDGLGFTGRGDGVAAVATALV 407          
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_CORGL (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Corynebacterium glutamicum GN=ispF PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.404e-20
Identity = 55/151 (36.42%), Postives = 78/151 (51.66%), Query Frame = 3
Query:  303 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVI 755
            RVG   D H++E G P  I  +      GCE HSDGDV+ H +VDA+L A GL D+G       P++ G   +  +KE   L+   GY IGN+ A L+ Q PK  P +E  +  +SE++GA P  ++     H       E R+  A  V+
Sbjct:    8 RVGIATDAHQIEAGKPCWIACLLFEGVDGCEGHSDGDVVAHAIVDALLSASGLGDLGSFVGVGRPEYDGVSGTQLLKEVRELLSAHGYVIGNVAAQLVGQTPKFGPRREEAQQVISEIIGA-PCSLSATTTDHMGFTGRSEGRASVATAVV 157          
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_PROAC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Propionibacterium acnes GN=ispF PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.433e-19
Identity = 52/151 (34.44%), Postives = 81/151 (53.64%), Query Frame = 3
Query:  294 LPFRVGHGFDLHRLEPGYPLIIGGINVPHER-GCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAA 743
            +  R G G D+H+L  G P+ + G++ P E  G   HSDGDV  H + DA+L A GL DIG IF  +DP+W GA     +   V L+   G+ I N+   ++ QRP+++  +      L++ +GA    V++ A T + +   G    +AA
Sbjct:    2 IEIRTGIGTDVHQLSAGVPMHVAGLSFPDETVGLVGHSDGDVACHAICDALLSATGLGDIGSIFGTADPQWAGAAGVALLGHVVALVTGEGWTIQNVAVQVVGQRPRMAARRAEAEAALAQTVGAP---VSVSATTTDHLGFTGRGEGVAA 149          
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_CORGB (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Corynebacterium glutamicum (strain R) GN=ispF PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.433e-19
Identity = 53/151 (35.10%), Postives = 79/151 (52.32%), Query Frame = 3
Query:  303 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVI 755
            RVG   D H++E G P  I  +      GCE HSDGDV+ H +VDA+L A GL D+G       P++ G   +  +KE   L++  G+ IGN+ A L+ Q PK  P +E  +  +S+++GA P  ++     H       E R+  A  V+
Sbjct:    8 RVGIATDAHQIEAGKPCWIACLLFEGVDGCEGHSDGDVIAHAIVDALLSASGLGDLGSFVGVGRPEYDGVSGTQLLKEVRELLESRGFVIGNVAAQLVGQTPKFGPRREEAQQVISDIIGA-PCSLSATTTDHMGFTGRSEGRASVATAVV 157          
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_FRASC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Frankia sp. (strain CcI3) GN=ispF PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 4.171e-19
Identity = 54/155 (34.84%), Postives = 82/155 (52.90%), Query Frame = 3
Query:  303 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMK 767
            RVG G D+H    G P  +  +  P E G   HSDGDV  H   DA+L A  L D+G++F    P++ GA  +V + E  RL+  AG+ IGN+   +I  RP+++  +E  +  +S  LGA    V+L A T + +   G    +AA    L+++
Sbjct:    8 RVGVGVDVHPFAAGRPCWVACLEWPGETGLAGHSDGDVAAHAACDALLTASCLGDLGRVFGTDRPEYAGASGAVLLAETARLLGAAGWAIGNVSVQVIGNRPRMAGRREDAQKAMSVALGAS---VSLSATTTDGLGLTGRGEGLAAIATALVIR 159          
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_KOSOT (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Kosmotoga olearia (strain TBF 19.5.1) GN=ispF PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.447e-19
Identity = 59/158 (37.34%), Postives = 91/158 (57.59%), Query Frame = 3
Query:  300 FRVGHGFDLHRLEPGYP-LIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAG-YEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMK 767
            +RVG GFD H LE     L +GG+ V  E     HSDGD L+H +VDAILGA    +IG  FP+++   +G  S+ F+ E +R    AG YEI N+D+ +I+ + +++P+ E IR  L+ +LG     +N+K K+   +       S++ + V +L K
Sbjct:    2 YRVGIGFDAHPLEANKKGLYLGGVKVSEEYSSIGHSDGDALIHAIVDAILGATNAGNIGIWFPENEEN-RGRRSTEFL-EIIRKKILAGKYEILNIDSVIIIDKVRMNPHIENIRLKLARILGISKGNINVKPKSGNTL----YGNSVSVYAVCMLKK 153          
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_COREF (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Corynebacterium efficiens GN=ispF PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.447e-19
Identity = 54/151 (35.76%), Postives = 78/151 (51.66%), Query Frame = 3
Query:  303 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVI 755
            RVG   D H++E G P  I  +      GCE HSDGDV+ H +VDA+L A GL D+G       P++ G   +  + E   L+   G+ IGN+ A L+ Q PK  P +E  +  +S++LGA P  ++     H      GE R+  A  V+
Sbjct:   19 RVGIASDAHQIEAGKPCWIACLLFDGVDGCEGHSDGDVVAHAIVDALLSASGLGDLGSFVGVGRPEYDGVSGTQLLIEVRELLITRGFTIGNVAAQLVGQTPKFGPRREEAQQVISDILGA-PCFLSATTTDHMGFTGRGEGRAALATAVV 168          
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_FRASN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Frankia sp. (strain EAN1pec) GN=ispF PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.114e-19
Identity = 53/155 (34.19%), Postives = 79/155 (50.97%), Query Frame = 3
Query:  303 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMK 767
            RVG G D+H  E G    +  +  P E G   HSDGDV  H   DA+L A G+ D+G +F    P+W GA  +  + E  RL+ E G+ IGN+   ++  RP+++  +   +  +S  LGA    VNL A T + +   G    +AA    L+ +
Sbjct:    8 RVGTGVDVHPFEQGRECWVACLLWPGETGLAGHSDGDVASHAACDALLTASGIGDLGAVFGTGRPEWSGASGAALLGETARLLAEGGWLIGNVAVQVVGNRPRMAARRVEAQEAMSAALGAP---VNLSATTTDGLGLTGRGEGLAAIATALVTR 159          
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_FRAAA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Frankia alni (strain ACN14a) GN=ispF PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.213e-18
Identity = 53/155 (34.19%), Postives = 81/155 (52.26%), Query Frame = 3
Query:  303 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMK 767
            RVG G D+H    G P  +  +  P E G   HSDGDV  H   DA+L A  L D+G++F    P++ GA  +V + E  RL+   G+ IGN+   +I  RP+++  +E  +  +S  LGA    V+L A T + +   G    +AA    L+++
Sbjct:    8 RVGIGVDVHPFAAGRPCWVACLEWPGETGLAGHSDGDVAAHATCDALLTASCLGDLGKVFGTDRPEYAGASGAVLLAETARLLAVGGWVIGNVSVQVIGNRPRMAARREQAQAAMSAALGAS---VSLSATTTDGLGLTGRGEGLAAIATALVVR 159          
The following BLAST results are available for this feature:
BLAST of CK939734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_MYCA17.601e-2135.062-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPDF_CLAM32.211e-2037.25Bifunctional enzyme ispD/ispF OS=Clavibacter michi... [more]
ISPF_CORGL8.404e-2036.422-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PROAC1.433e-1934.442-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_CORGB1.433e-1935.102-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_FRASC4.171e-1934.842-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_KOSOT5.447e-1937.342-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_COREF5.447e-1935.762-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_FRASN7.114e-1934.192-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_FRAAA1.213e-1834.192-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004746_D02 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIF_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939734 ID=CK939734; Name=CK939734; organism=Citrus sinensis; type=EST; length=877bp
GGGGATATCGAGCAGACAGCAGAGCACGAACAGCGTCTCTCCTCTCTTCG
TAAAATTAGATGGTGTTGACGATGGCCGCTCAATCATACACCACCACTCC
TCTCCACAGCAAAATTACGAATAAGCCACTATGTCCTCCTCCGTTGAGTT
TGAAGCCTCGTAGCTTAACCGCCAAACATCTCCGCACAACACAGTCAACG
TCGCTGCCTCGTATTTCAGTTTCAGCTGCAGCCATTTCTTCCATCGAAGT
TAAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCAAAATCACTGCCTT
TTCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGAGCCTGGCTACCCT
CTGATCATCGGTGGAATCAATGTTCCCCACGAGAGAGGCTGCGAGGCTCA
CTCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGATGCAATTTTGGGAG
CATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGATTCTGATCCTAAG
TGGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAGCTGTGAGACTCAT
GGATGAGGCCGGCTATGAGATTGGCAACTTGGATGCCACGCTGATTCTTC
AAAGACCAAAATTGAGCCCATACAAGGAGACTATCCGAACCAACTTGTCT
GAACTGCTAGGAGCAGACCCCACCGTTGTAAATCTGAAAGCGAAGACTCA
TGAAAAAGTTGATAGCCTTGGTGAANNNCGAAGTATTGCAGCTCACACTG
TGATCCTTCTCATGAAGAAGTAAAATAAACGATTTGGGAATTGTCTTAAA
TGTAGCAGTTGTATCCTATTATCATTGTTGTATTTGTATTCTGCTTACAA
AGACTATTCACTTGGTATAGATTTCCA
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