CK939734

Overview
NameCK939734
Unique NameCK939734
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_VIBVY (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Vibrio vulnificus (strain YJ016) GN=ispF PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 9.881e-37
Identity = 73/156 (46.79%), Postives = 104/156 (66.67%), Query Frame = 3
Query:  303 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMKK 770
            R+GHGFD+H+     P+IIGG+ VP+E+G  AHSDGDV LH + DA+LGA+   DIG+ FPD+D KWKGA S   +K+  R + E GY++GN D T+I Q PK++PY + +R  ++  L  D   +N+KA T E++   G    IA   V+LL+K+
Sbjct:    3 RIGHGFDVHKFGGEGPVIIGGVAVPYEQGLIAHSDGDVALHALSDALLGAIAAGDIGRHFPDTDDKWKGADSRELLKDVYRRVKEQGYKLGNADVTIIAQAPKMAPYIDAMREAIAHDLETDIRNINVKATTTERLGFTGRKEGIATEAVVLLIKQ 158          
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_PROM9 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Prochlorococcus marinus (strain MIT 9312) GN=ispF PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 9.881e-37
Identity = 72/159 (45.28%), Postives = 106/159 (66.67%), Query Frame = 3
Query:  300 FRVGHGFDLHRLEPGYPLIIGGINVPH--ERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMKK 770
            FR+G+G+D+HRL  G  LIIGG+N+ H    G + HSD DVL H ++DA+LGAL L DIG+ FP SD KWK   S + + + + L+ + G+EI N+D+ L+ +RPK+ P+ E ++ NLS  L  D + + +KA T+EK+   G    I+ H+V+LL KK
Sbjct:    8 FRIGNGYDIHRLVTGRKLIIGGVNLKHPDNLGLDGHSDADVLTHSIMDALLGALSLGDIGKYFPPSDDKWKDVDSLILLSKVIDLVRKQGWEINNIDSVLVAERPKIKPFVEIMKKNLSNTLKIDNSFIGIKATTNEKLGPEGREEGISCHSVVLLEKK 166          
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_ACAM1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Acaryochloris marina (strain MBIC 11017) GN=ispF PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 9.881e-37
Identity = 66/153 (43.14%), Postives = 107/153 (69.93%), Query Frame = 3
Query:  303 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILL 761
            R+G+G+D+H+L  G PLI+GG+ + H  G + HSD DVL H ++DA+LGAL L DIG  FP +DPKW GA S   +++  +L+ + G++IGN+D+ ++ +RPKL P+ E +R  +S++L   P ++ +KA T+EK+  +G+ + I ++ V LL
Sbjct:    5 RIGNGYDIHQLVEGRPLILGGVQIEHSLGLKGHSDADVLTHAIMDALLGALSLGDIGHYFPPTDPKWAGADSLKLLEQVHQLILDRGWQIGNIDSVVVAERPKLKPHIEAMRDRISQVLNLSPELIGIKATTNEKLGPVGQEQGICSYAVALL 157          
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_SHELP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=ispF PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.290e-36
Identity = 74/153 (48.37%), Postives = 102/153 (66.67%), Query Frame = 3
Query:  303 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILL 761
            R+GHGFD+H+     PLI+GG+ VP++ G  AHSDGDV+LH + DAILGA+ L DIG+ FPD+DP +KGA S V ++   +L  + GY +GNLD T+I Q PK+ P+ + IR  LS  L +D   +N+KA T EK+   G    IA   V+L+
Sbjct:    4 RIGHGFDVHKFGGELPLILGGVEVPYDTGLVAHSDGDVVLHAISDAILGAMALGDIGKHFPDTDPDFKGADSRVLLRHCYQLALDKGYRLGNLDVTIIAQAPKMLPHIQAIRECLSADLESDIEAINVKATTTEKLGFTGRKEGIAVEAVVLM 156          
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_PORGI (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Porphyromonas gingivalis GN=ispF PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.290e-36
Identity = 70/156 (44.87%), Postives = 105/156 (67.31%), Query Frame = 3
Query:  297 PFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLM 764
            PFR+G GFD+HRL  GYPL +GG+ + H +G E HSD DVL+H + DA+LGA  L DIG  FP SDP++KG  S + +   + L+   GYE+GN+DAT+  ++PKL+P+   ++  L+E++  + + ++LKA T EK+   G    I+A+ V LL+
Sbjct:    4 PFRIGFGFDVHRLSEGYPLWMGGVRLEHSKGLEGHSDADVLIHAICDALLGAAALRDIGYHFPPSDPQYKGIDSKILLARVMELVRSQGYELGNIDATIAAEQPKLNPHIPDMQRVLAEVIQVEVSDISLKATTTEKLGFTGREEGISAYAVALLI 159          
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_GEOTN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=ispF PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.290e-36
Identity = 73/156 (46.79%), Postives = 105/156 (67.31%), Query Frame = 3
Query:  300 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMK 767
            FR+G GFD+H+   G PLIIGG+++P+E+G   HSD DVLLH V DA LGA+G  DIG+ FPD+DP++K A S+  +     L+ + GY + N D T+I Q+PK++PY E ++  ++ LL A+ + VN+KA T EK+   G    +AA  V+LL K
Sbjct:    2 FRIGQGFDVHQFVEGRPLIIGGVHIPYEKGLLGHSDADVLLHAVADACLGAIGAGDIGRHFPDTDPRYKDADSAELLAHVWSLVRQEGYVLVNADCTIIAQKPKMAPYIEEMKKVIARLLEAERSQVNVKATTTEKLGFTGREEGVAAQVVVLLQK 157          
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_BURPS (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Burkholderia pseudomallei GN=ispF PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.290e-36
Identity = 72/159 (45.28%), Postives = 107/159 (67.30%), Query Frame = 3
Query:  294 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMKK 770
            + FR+G G+D+H+L PG PLIIGG+ +P+ERG   HSD DVLLH + DA+ GA  L DIG+ F D+DP++KGA S   ++E    + +AG+ I N+D+T+I Q PKL+P+ + +R N++  L      VN+KAKT+EK+  LG    I A    L++++
Sbjct:    1 MDFRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFSDTDPRFKGADSRALLRECASRVAQAGFAIRNVDSTIIAQAPKLAPHIDAMRANIAADLDLPLDRVNVKAKTNEKLGYLGRGEGIEAQAAALVVRE 159          
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_BURP6 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Burkholderia pseudomallei (strain 668) GN=ispF PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.290e-36
Identity = 72/159 (45.28%), Postives = 107/159 (67.30%), Query Frame = 3
Query:  294 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMKK 770
            + FR+G G+D+H+L PG PLIIGG+ +P+ERG   HSD DVLLH + DA+ GA  L DIG+ F D+DP++KGA S   ++E    + +AG+ I N+D+T+I Q PKL+P+ + +R N++  L      VN+KAKT+EK+  LG    I A    L++++
Sbjct:    1 MDFRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFSDTDPRFKGADSRALLRECASRVAQAGFAIRNVDSTIIAQAPKLAPHIDAMRANIAADLDLPLDRVNVKAKTNEKLGYLGRGEGIEAQAAALVVRE 159          
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_BURP1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Burkholderia pseudomallei (strain 1710b) GN=ispF PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.290e-36
Identity = 72/159 (45.28%), Postives = 107/159 (67.30%), Query Frame = 3
Query:  294 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMKK 770
            + FR+G G+D+H+L PG PLIIGG+ +P+ERG   HSD DVLLH + DA+ GA  L DIG+ F D+DP++KGA S   ++E    + +AG+ I N+D+T+I Q PKL+P+ + +R N++  L      VN+KAKT+EK+  LG    I A    L++++
Sbjct:    1 MDFRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFSDTDPRFKGADSRALLRECASRVAQAGFAIRNVDSTIIAQAPKLAPHIDAMRANIAADLDLPLDRVNVKAKTNEKLGYLGRGEGIEAQAAALVVRE 159          
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_BURP0 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Burkholderia pseudomallei (strain 1106a) GN=ispF PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.290e-36
Identity = 72/159 (45.28%), Postives = 107/159 (67.30%), Query Frame = 3
Query:  294 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMKK 770
            + FR+G G+D+H+L PG PLIIGG+ +P+ERG   HSD DVLLH + DA+ GA  L DIG+ F D+DP++KGA S   ++E    + +AG+ I N+D+T+I Q PKL+P+ + +R N++  L      VN+KAKT+EK+  LG    I A    L++++
Sbjct:    1 MDFRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFSDTDPRFKGADSRALLRECASRVAQAGFAIRNVDSTIIAQAPKLAPHIDAMRANIAADLDLPLDRVNVKAKTNEKLGYLGRGEGIEAQAAALVVRE 159          
The following BLAST results are available for this feature:
BLAST of CK939734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ISPF_VIBVY9.881e-3746.792-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PROM99.881e-3745.282-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_ACAM19.881e-3743.142-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_SHELP1.290e-3648.372-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_PORGI1.290e-3644.872-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_GEOTN1.290e-3646.792-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BURPS1.290e-3645.282-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BURP61.290e-3645.282-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BURP11.290e-3645.282-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]
ISPF_BURP01.290e-3645.282-C-methyl-D-erythritol 2,4-cyclodiphosphate synth... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004746_D02 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIF_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939734 ID=CK939734; Name=CK939734; organism=Citrus sinensis; type=EST; length=877bp
GGGGATATCGAGCAGACAGCAGAGCACGAACAGCGTCTCTCCTCTCTTCG
TAAAATTAGATGGTGTTGACGATGGCCGCTCAATCATACACCACCACTCC
TCTCCACAGCAAAATTACGAATAAGCCACTATGTCCTCCTCCGTTGAGTT
TGAAGCCTCGTAGCTTAACCGCCAAACATCTCCGCACAACACAGTCAACG
TCGCTGCCTCGTATTTCAGTTTCAGCTGCAGCCATTTCTTCCATCGAAGT
TAAAGAGTCATCGGCTTCGATCCAACCGTCCAAATCAAAATCACTGCCTT
TTCGTGTGGGCCACGGGTTTGATCTTCATAGATTGGAGCCTGGCTACCCT
CTGATCATCGGTGGAATCAATGTTCCCCACGAGAGAGGCTGCGAGGCTCA
CTCTGACGGTGATGTTTTGCTTCACTGTGTTGTGGATGCAATTTTGGGAG
CATTGGGTCTTCCTGATATTGGTCAGATATTTCCTGATTCTGATCCTAAG
TGGAAGGGTGCACCATCCTCTGTTTTTATCAAAGAAGCTGTGAGACTCAT
GGATGAGGCCGGCTATGAGATTGGCAACTTGGATGCCACGCTGATTCTTC
AAAGACCAAAATTGAGCCCATACAAGGAGACTATCCGAACCAACTTGTCT
GAACTGCTAGGAGCAGACCCCACCGTTGTAAATCTGAAAGCGAAGACTCA
TGAAAAAGTTGATAGCCTTGGTGAANNNCGAAGTATTGCAGCTCACACTG
TGATCCTTCTCATGAAGAAGTAAAATAAACGATTTGGGAATTGTCTTAAA
TGTAGCAGTTGTATCCTATTATCATTGTTGTATTTGTATTCTGCTTACAA
AGACTATTCACTTGGTATAGATTTCCA
back to top