CK939734
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_VIBVY (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Vibrio vulnificus (strain YJ016) GN=ispF PE=3 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 9.881e-37 Identity = 73/156 (46.79%), Postives = 104/156 (66.67%), Query Frame = 3 Query: 303 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMKK 770 R+GHGFD+H+ P+IIGG+ VP+E+G AHSDGDV LH + DA+LGA+ DIG+ FPD+D KWKGA S +K+ R + E GY++GN D T+I Q PK++PY + +R ++ L D +N+KA T E++ G IA V+LL+K+ Sbjct: 3 RIGHGFDVHKFGGEGPVIIGGVAVPYEQGLIAHSDGDVALHALSDALLGAIAAGDIGRHFPDTDDKWKGADSRELLKDVYRRVKEQGYKLGNADVTIIAQAPKMAPYIDAMREAIAHDLETDIRNINVKATTTERLGFTGRKEGIATEAVVLLIKQ 158
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_PROM9 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Prochlorococcus marinus (strain MIT 9312) GN=ispF PE=3 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 9.881e-37 Identity = 72/159 (45.28%), Postives = 106/159 (66.67%), Query Frame = 3 Query: 300 FRVGHGFDLHRLEPGYPLIIGGINVPH--ERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMKK 770 FR+G+G+D+HRL G LIIGG+N+ H G + HSD DVL H ++DA+LGAL L DIG+ FP SD KWK S + + + + L+ + G+EI N+D+ L+ +RPK+ P+ E ++ NLS L D + + +KA T+EK+ G I+ H+V+LL KK Sbjct: 8 FRIGNGYDIHRLVTGRKLIIGGVNLKHPDNLGLDGHSDADVLTHSIMDALLGALSLGDIGKYFPPSDDKWKDVDSLILLSKVIDLVRKQGWEINNIDSVLVAERPKIKPFVEIMKKNLSNTLKIDNSFIGIKATTNEKLGPEGREEGISCHSVVLLEKK 166
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_ACAM1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Acaryochloris marina (strain MBIC 11017) GN=ispF PE=3 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 9.881e-37 Identity = 66/153 (43.14%), Postives = 107/153 (69.93%), Query Frame = 3 Query: 303 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILL 761 R+G+G+D+H+L G PLI+GG+ + H G + HSD DVL H ++DA+LGAL L DIG FP +DPKW GA S +++ +L+ + G++IGN+D+ ++ +RPKL P+ E +R +S++L P ++ +KA T+EK+ +G+ + I ++ V LL Sbjct: 5 RIGNGYDIHQLVEGRPLILGGVQIEHSLGLKGHSDADVLTHAIMDALLGALSLGDIGHYFPPTDPKWAGADSLKLLEQVHQLILDRGWQIGNIDSVVVAERPKLKPHIEAMRDRISQVLNLSPELIGIKATTNEKLGPVGQEQGICSYAVALL 157
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_SHELP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=ispF PE=3 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 1.290e-36 Identity = 74/153 (48.37%), Postives = 102/153 (66.67%), Query Frame = 3 Query: 303 RVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILL 761 R+GHGFD+H+ PLI+GG+ VP++ G AHSDGDV+LH + DAILGA+ L DIG+ FPD+DP +KGA S V ++ +L + GY +GNLD T+I Q PK+ P+ + IR LS L +D +N+KA T EK+ G IA V+L+ Sbjct: 4 RIGHGFDVHKFGGELPLILGGVEVPYDTGLVAHSDGDVVLHAISDAILGAMALGDIGKHFPDTDPDFKGADSRVLLRHCYQLALDKGYRLGNLDVTIIAQAPKMLPHIQAIRECLSADLESDIEAINVKATTTEKLGFTGRKEGIAVEAVVLM 156
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_PORGI (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Porphyromonas gingivalis GN=ispF PE=3 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 1.290e-36 Identity = 70/156 (44.87%), Postives = 105/156 (67.31%), Query Frame = 3 Query: 297 PFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLM 764 PFR+G GFD+HRL GYPL +GG+ + H +G E HSD DVL+H + DA+LGA L DIG FP SDP++KG S + + + L+ GYE+GN+DAT+ ++PKL+P+ ++ L+E++ + + ++LKA T EK+ G I+A+ V LL+ Sbjct: 4 PFRIGFGFDVHRLSEGYPLWMGGVRLEHSKGLEGHSDADVLIHAICDALLGAAALRDIGYHFPPSDPQYKGIDSKILLARVMELVRSQGYELGNIDATIAAEQPKLNPHIPDMQRVLAEVIQVEVSDISLKATTTEKLGFTGREEGISAYAVALLI 159
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_GEOTN (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=ispF PE=3 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 1.290e-36 Identity = 73/156 (46.79%), Postives = 105/156 (67.31%), Query Frame = 3 Query: 300 FRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMK 767 FR+G GFD+H+ G PLIIGG+++P+E+G HSD DVLLH V DA LGA+G DIG+ FPD+DP++K A S+ + L+ + GY + N D T+I Q+PK++PY E ++ ++ LL A+ + VN+KA T EK+ G +AA V+LL K Sbjct: 2 FRIGQGFDVHQFVEGRPLIIGGVHIPYEKGLLGHSDADVLLHAVADACLGAIGAGDIGRHFPDTDPRYKDADSAELLAHVWSLVRQEGYVLVNADCTIIAQKPKMAPYIEEMKKVIARLLEAERSQVNVKATTTEKLGFTGREEGVAAQVVVLLQK 157
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_BURPS (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Burkholderia pseudomallei GN=ispF PE=1 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 1.290e-36 Identity = 72/159 (45.28%), Postives = 107/159 (67.30%), Query Frame = 3 Query: 294 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMKK 770 + FR+G G+D+H+L PG PLIIGG+ +P+ERG HSD DVLLH + DA+ GA L DIG+ F D+DP++KGA S ++E + +AG+ I N+D+T+I Q PKL+P+ + +R N++ L VN+KAKT+EK+ LG I A L++++ Sbjct: 1 MDFRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFSDTDPRFKGADSRALLRECASRVAQAGFAIRNVDSTIIAQAPKLAPHIDAMRANIAADLDLPLDRVNVKAKTNEKLGYLGRGEGIEAQAAALVVRE 159
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_BURP6 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Burkholderia pseudomallei (strain 668) GN=ispF PE=3 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 1.290e-36 Identity = 72/159 (45.28%), Postives = 107/159 (67.30%), Query Frame = 3 Query: 294 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMKK 770 + FR+G G+D+H+L PG PLIIGG+ +P+ERG HSD DVLLH + DA+ GA L DIG+ F D+DP++KGA S ++E + +AG+ I N+D+T+I Q PKL+P+ + +R N++ L VN+KAKT+EK+ LG I A L++++ Sbjct: 1 MDFRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFSDTDPRFKGADSRALLRECASRVAQAGFAIRNVDSTIIAQAPKLAPHIDAMRANIAADLDLPLDRVNVKAKTNEKLGYLGRGEGIEAQAAALVVRE 159
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_BURP1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Burkholderia pseudomallei (strain 1710b) GN=ispF PE=1 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 1.290e-36 Identity = 72/159 (45.28%), Postives = 107/159 (67.30%), Query Frame = 3 Query: 294 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMKK 770 + FR+G G+D+H+L PG PLIIGG+ +P+ERG HSD DVLLH + DA+ GA L DIG+ F D+DP++KGA S ++E + +AG+ I N+D+T+I Q PKL+P+ + +R N++ L VN+KAKT+EK+ LG I A L++++ Sbjct: 1 MDFRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFSDTDPRFKGADSRALLRECASRVAQAGFAIRNVDSTIIAQAPKLAPHIDAMRANIAADLDLPLDRVNVKAKTNEKLGYLGRGEGIEAQAAALVVRE 159
BLAST of CK939734 vs. ExPASy Swiss-Prot
Match: ISPF_BURP0 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Burkholderia pseudomallei (strain 1106a) GN=ispF PE=3 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 1.290e-36 Identity = 72/159 (45.28%), Postives = 107/159 (67.30%), Query Frame = 3 Query: 294 LPFRVGHGFDLHRLEPGYPLIIGGINVPHERGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMDEAGYEIGNLDATLILQRPKLSPYKETIRTNLSELLGADPTVVNLKAKTHEKVDSLGEXRSIAAHTVILLMKK 770 + FR+G G+D+H+L PG PLIIGG+ +P+ERG HSD DVLLH + DA+ GA L DIG+ F D+DP++KGA S ++E + +AG+ I N+D+T+I Q PKL+P+ + +R N++ L VN+KAKT+EK+ LG I A L++++ Sbjct: 1 MDFRIGQGYDVHQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHAITDALFGAAALGDIGRHFSDTDPRFKGADSRALLRECASRVAQAGFAIRNVDSTIIAQAPKLAPHIDAMRANIAADLDLPLDRVNVKAKTNEKLGYLGRGEGIEAQAAALVVRE 159 The following BLAST results are available for this feature:
BLAST of CK939734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939734 ID=CK939734; Name=CK939734; organism=Citrus sinensis; type=EST; length=877bpback to top |