CX300692

Overview
NameCX300692
Unique NameCX300692
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length404
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1278 contig Csv1_Contig1278:2..405. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300692 vs. ExPASy Swiss-Prot
Match: RL24_CANGA (60S ribosomal protein L24 OS=Candida glabrata GN=RPL24 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.394e-26
Identity = 58/118 (49.15%), Postives = 78/118 (66.10%), Query Frame = 2
Query:   47 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIK 400
            +K E+  FSGAKIYPG+G  F+R DS++F F NSK    F  R  P ++ WT +YR+ HKK I  E  KK+ R T K   R+IVGA+LE+I++RR+ KPEVR A R+   +  KE+ K
Sbjct:    1 MKVEIDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRVAWTVLYRRHHKKGITEEVAKKRSRKTVKA-QRAIVGASLELIKERRSLKPEVRKAKRDDKAKADKEKKK 117          
BLAST of CX300692 vs. ExPASy Swiss-Prot
Match: RL24A_YEAST (60S ribosomal protein L24-A OS=Saccharomyces cerevisiae GN=RPL24A PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.350e-26
Identity = 58/118 (49.15%), Postives = 77/118 (65.25%), Query Frame = 2
Query:   47 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIK 400
            +K E+  FSGAKIYPG+G  F+R DS++F F NSK    F  R  P ++ WT ++RK HKK I  E  KK+ R T K   R I GA+L++I++RR+ KPEVR A RE  L+  KE+ K
Sbjct:    1 MKVEIDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWTVLFRKHHKKGITEEVAKKRSRKTVKA-QRPITGASLDLIKERRSLKPEVRKANREEKLKANKEKKK 117          
BLAST of CX300692 vs. ExPASy Swiss-Prot
Match: RL24_KLULA (60S ribosomal protein L24 OS=Kluyveromyces lactis GN=RPL24 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.424e-25
Identity = 55/118 (46.61%), Postives = 79/118 (66.95%), Query Frame = 2
Query:   47 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIK 400
            +K E+  FSGAKIYPG+G  F+R DS++F F +SK    FH R  P ++ WT +YR+ HKK I  E  +K+ R + K   R++VGA+LE+I++RR+ KPEVR A R+   +  KE+ K
Sbjct:    1 MKVEIDSFSGAKIYPGRGTLFVRGDSKIFRFQSSKSASLFHQRKNPRRIAWTVLYRRHHKKGITEEVARKRTRKSVKA-QRAVVGASLELIKERRSLKPEVRKAQRDEKKKADKEKKK 117          
BLAST of CX300692 vs. ExPASy Swiss-Prot
Match: RL24B_YEAST (60S ribosomal protein L24-B OS=Saccharomyces cerevisiae GN=RPL24B PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.860e-25
Identity = 57/116 (49.14%), Postives = 76/116 (65.52%), Query Frame = 2
Query:   47 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 394
            +K E+  FSGAKIYPG+G  F+R DS++F F NSK    F  R  P ++ WT ++RK HKK I  E  KK+ R T K   R I GA+L++I++RR+ KPEVR A RE  L+  KE+
Sbjct:    1 MKVEVDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWTVLFRKHHKKGITEEVAKKRSRKTVKA-QRPITGASLDLIKERRSLKPEVRKANREEKLKANKEK 115          
BLAST of CX300692 vs. ExPASy Swiss-Prot
Match: RL24_RAT (60S ribosomal protein L24 OS=Rattus norvegicus GN=Rpl24 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.173e-25
Identity = 58/119 (48.74%), Postives = 79/119 (66.39%), Query Frame = 2
Query:   47 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKK-RRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIK 400
            +K ELC FSG KIYPG G R+ R+D +VF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ RRA K  + R+I GA+L  I  +R +KPEVR A RE A+R  KE  K
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK--FQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKK 117          
BLAST of CX300692 vs. ExPASy Swiss-Prot
Match: RL24_MOUSE (60S ribosomal protein L24 OS=Mus musculus GN=Rpl24 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 3.173e-25
Identity = 58/119 (48.74%), Postives = 79/119 (66.39%), Query Frame = 2
Query:   47 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKK-RRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIK 400
            +K ELC FSG KIYPG G R+ R+D +VF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ RRA K  + R+I GA+L  I  +R +KPEVR A RE A+R  KE  K
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK--FQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKK 117          
BLAST of CX300692 vs. ExPASy Swiss-Prot
Match: RL24_MACFA (60S ribosomal protein L24 OS=Macaca fascicularis GN=RPL24 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.173e-25
Identity = 58/119 (48.74%), Postives = 79/119 (66.39%), Query Frame = 2
Query:   47 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKK-RRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIK 400
            +K ELC FSG KIYPG G R+ R+D +VF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ RRA K  + R+I GA+L  I  +R +KPEVR A RE A+R  KE  K
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK--FQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKK 117          
BLAST of CX300692 vs. ExPASy Swiss-Prot
Match: RL24_HUMAN (60S ribosomal protein L24 OS=Homo sapiens GN=RPL24 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.173e-25
Identity = 58/119 (48.74%), Postives = 79/119 (66.39%), Query Frame = 2
Query:   47 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKK-RRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIK 400
            +K ELC FSG KIYPG G R+ R+D +VF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ RRA K  + R+I GA+L  I  +R +KPEVR A RE A+R  KE  K
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK--FQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKK 117          
BLAST of CX300692 vs. ExPASy Swiss-Prot
Match: RL24_FELCA (60S ribosomal protein L24 OS=Felis catus GN=RPL24 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.173e-25
Identity = 58/119 (48.74%), Postives = 79/119 (66.39%), Query Frame = 2
Query:   47 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKK-RRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIK 400
            +K ELC FSG KIYPG G R+ R+D +VF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ RRA K  + R+I GA+L  I  +R +KPEVR A RE A+R  KE  K
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK--FQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKK 117          
BLAST of CX300692 vs. ExPASy Swiss-Prot
Match: RL24_BOVIN (60S ribosomal protein L24 OS=Bos taurus GN=RPL24 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 3.173e-25
Identity = 58/119 (48.74%), Postives = 79/119 (66.39%), Query Frame = 2
Query:   47 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKK-RRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIK 400
            +K ELC FSG KIYPG G R+ R+D +VF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ RRA K  + R+I GA+L  I  +R +KPEVR A RE A+R  KE  K
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK--FQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKK 117          
The following BLAST results are available for this feature:
BLAST of CX300692 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
RL24_CANGA6.394e-2649.1560S ribosomal protein L24 OS=Candida glabrata GN=R... [more]
RL24A_YEAST8.350e-2649.1560S ribosomal protein L24-A OS=Saccharomyces cerev... [more]
RL24_KLULA1.424e-2546.6160S ribosomal protein L24 OS=Kluyveromyces lactis ... [more]
RL24B_YEAST1.860e-2549.1460S ribosomal protein L24-B OS=Saccharomyces cerev... [more]
RL24_RAT3.173e-2548.7460S ribosomal protein L24 OS=Rattus norvegicus GN=... [more]
RL24_MOUSE3.173e-2548.7460S ribosomal protein L24 OS=Mus musculus GN=Rpl24... [more]
RL24_MACFA3.173e-2548.7460S ribosomal protein L24 OS=Macaca fascicularis G... [more]
RL24_HUMAN3.173e-2548.7460S ribosomal protein L24 OS=Homo sapiens GN=RPL24... [more]
RL24_FELCA3.173e-2548.7460S ribosomal protein L24 OS=Felis catus GN=RPL24 ... [more]
RL24_BOVIN3.173e-2548.7460S ribosomal protein L24 OS=Bos taurus GN=RPL24 P... [more]

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Properties
Property NameValue
Genbank descriptionC08001B12SK PhyRootSw1 Citrus sinensis cDNA clone C08001B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300692 ID=CX300692; Name=CX300692; organism=Citrus sinensis; type=EST; length=404bp
CTCGTGCCGAATTCGGCACGAGGCAACACCATCAGAAACCATGGTTCTCA
AGACTGAACTTTGCAAATTCAGCGGTGCCAAGATATACCCTGGTAAGGGT
ATCAGATTTATTCGTTCAGACTCTCAGGTTTTCCTCTTTGCCAATTCTAA
ATGCAAGAGGTACTTCCACAACCGATTGAAGCCATCGAAGCTTACATGGA
CAGCCATGTACAGGAAACAGCACAAGAAGGACATTGCTGCTGAGGCAGTT
AAGAAGAAGCGTCGTGCCACTAAGAAGCCCTATTCAAGATCTATAGTTGG
TGCCACCTTGGAAGTTATCCAGAAGAGAAGAACTGAGAAGCCAGAAGTCC
GAGATGCTGCACGGGAGGCTGCACTTCGTGAAATTAAGGAGAGGATCAAG
AAGA
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