CX300692

Overview
NameCX300692
Unique NameCX300692
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length404
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1278 contig Csv1_Contig1278:2..405. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300692 vs. ExPASy Swiss-Prot
Match: RLP24_YEAST (Ribosome biogenesis protein RLP24 OS=Saccharomyces cerevisiae GN=RLP24 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.255e-12
Identity = 37/113 (32.74%), Postives = 59/113 (52.21%), Query Frame = 2
Query:   62 CKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVK--KKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKER 394
            C F  +  YPG GI F+R+D++ F F  SKC + F  R  P KL WT  +RK   K++A ++     +RR     Y+R +V  TL+ + +    + +   A  +  +R  KE+
Sbjct:    6 CHFCSSPCYPGHGIMFVRNDAKEFRFCRSKCHKAFKQRRNPRKLKWTKAFRKAAGKELAVDSTLTFAQRRNVPVRYNRELVATTLKAMARIEEIRQKRERAFYKNRMRGNKEK 118          
BLAST of CX300692 vs. ExPASy Swiss-Prot
Match: RLP24_PONAB (Probable ribosome biogenesis protein RLP24 OS=Pongo abelii GN=RSL24D1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.529e-11
Identity = 37/121 (30.58%), Postives = 61/121 (50.41%), Query Frame = 2
Query:   47 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAE--AVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKK 403
            ++ E C F    IYPG G+ F+R+D +VF F  SKC + F  R  P K+ WT  +RK   K++  +     +KRR     Y R +   T++ +++       V +  ++   + I  R+KK
Sbjct:    1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKRRNPRKVRWTKAFRKAAGKELTVDNSFEFEKRRNEPIKYQRELWNKTIDAMKR-------VEEIKQKRQAKFIMNRLKK 114          
BLAST of CX300692 vs. ExPASy Swiss-Prot
Match: RLP24_RAT (Probable ribosome biogenesis protein RLP24 OS=Rattus norvegicus GN=Rsl24d1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.608e-11
Identity = 40/131 (30.53%), Postives = 65/131 (49.62%), Query Frame = 2
Query:   47 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAE--AVKKKRRATKKPYSRSIVGATL------EVIQKRRTEK------PEVRDAAREAALREIKERI 397
            ++ E C F    IYPG G+ F+R+D +VF F  SKC + F  +  P K+ WT  +RK   K++  +     +KRR     Y R +   T+      E I++RR  K       + ++  +   +RE+K+ I
Sbjct:    1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQRRQAKFIMNRLKKNKELQKVQDIREVKQNI 131          
BLAST of CX300692 vs. ExPASy Swiss-Prot
Match: RLP24_MOUSE (Probable ribosome biogenesis protein RLP24 OS=Mus musculus GN=Rsl24d1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.608e-11
Identity = 36/121 (29.75%), Postives = 61/121 (50.41%), Query Frame = 2
Query:   47 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAE--AVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKK 403
            ++ E C F    IYPG G+ F+R+D +VF F  SKC + F  +  P K+ WT  +RK   K++  +     +KRR     Y R +   T++ +++       V +  ++   + I  R+KK
Sbjct:    1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKR-------VEEIKQKRQAKFIMNRLKK 114          
BLAST of CX300692 vs. ExPASy Swiss-Prot
Match: RLP24_BOVIN (Probable ribosome biogenesis protein RLP24 OS=Bos taurus GN=RSL24D1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.608e-11
Identity = 36/121 (29.75%), Postives = 61/121 (50.41%), Query Frame = 2
Query:   47 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAE--AVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKK 403
            ++ E C F    IYPG G+ F+R+D +VF F  SKC + F  +  P K+ WT  +RK   K++  +     +KRR     Y R +   T++ +++       V +  ++   + I  R+KK
Sbjct:    1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKR-------VEEIKQKRQAKFIMNRLKK 114          
BLAST of CX300692 vs. ExPASy Swiss-Prot
Match: RLP24_HUMAN (Probable ribosome biogenesis protein RLP24 OS=Homo sapiens GN=RSL24D1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.406e-11
Identity = 36/121 (29.75%), Postives = 61/121 (50.41%), Query Frame = 2
Query:   47 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAE--AVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKK 403
            ++ E C F    IYPG G+ F+R+D +VF F  SKC + F  +  P K+ WT  +RK   K++  +     +KRR     Y R +   T++ +++       V +  ++   + I  R+KK
Sbjct:    1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELTVDNSFEFEKRRNEPIKYQRELWNKTIDAMKR-------VEEIKQKRQAKFIMNRLKK 114          
BLAST of CX300692 vs. ExPASy Swiss-Prot
Match: RLP24_CAEEL (Probable ribosome biogenesis protein RLP24 OS=Caenorhabditis elegans GN=rpl-24.2 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.910e-11
Identity = 32/91 (35.16%), Postives = 52/91 (57.14%), Query Frame = 2
Query:   47 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVK--KKRRATKKPYSRSIVGATLE 313
            ++ E C F  + IYPG GI+F+R+DS VF F  S+C + F  +  P KL +T   R+   K++  +A +  ++RR     Y R++   T+E
Sbjct:    1 MRIEKCYFCSSPIYPGHGIQFVRNDSTVFKFCRSRCNKLFKKKKNPRKLRFTKAARRARGKELINDATQLLEQRRDEPVKYERAMFQKTIE 91          
The following BLAST results are available for this feature:
BLAST of CX300692 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
RLP24_YEAST5.255e-1232.74Ribosome biogenesis protein RLP24 OS=Saccharomyces... [more]
RLP24_PONAB1.529e-1130.58Probable ribosome biogenesis protein RLP24 OS=Pong... [more]
RLP24_RAT2.608e-1130.53Probable ribosome biogenesis protein RLP24 OS=Ratt... [more]
RLP24_MOUSE2.608e-1129.75Probable ribosome biogenesis protein RLP24 OS=Mus ... [more]
RLP24_BOVIN2.608e-1129.75Probable ribosome biogenesis protein RLP24 OS=Bos ... [more]
RLP24_HUMAN3.406e-1129.75Probable ribosome biogenesis protein RLP24 OS=Homo... [more]
RLP24_CAEEL9.910e-1135.16Probable ribosome biogenesis protein RLP24 OS=Caen... [more]

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Properties
Property NameValue
Genbank descriptionC08001B12SK PhyRootSw1 Citrus sinensis cDNA clone C08001B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300692 ID=CX300692; Name=CX300692; organism=Citrus sinensis; type=EST; length=404bp
CTCGTGCCGAATTCGGCACGAGGCAACACCATCAGAAACCATGGTTCTCA
AGACTGAACTTTGCAAATTCAGCGGTGCCAAGATATACCCTGGTAAGGGT
ATCAGATTTATTCGTTCAGACTCTCAGGTTTTCCTCTTTGCCAATTCTAA
ATGCAAGAGGTACTTCCACAACCGATTGAAGCCATCGAAGCTTACATGGA
CAGCCATGTACAGGAAACAGCACAAGAAGGACATTGCTGCTGAGGCAGTT
AAGAAGAAGCGTCGTGCCACTAAGAAGCCCTATTCAAGATCTATAGTTGG
TGCCACCTTGGAAGTTATCCAGAAGAGAAGAACTGAGAAGCCAGAAGTCC
GAGATGCTGCACGGGAGGCTGCACTTCGTGAAATTAAGGAGAGGATCAAG
AAGA
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