CX300691

Overview
NameCX300691
Unique NameCX300691
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length392
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300691 vs. ExPASy Swiss-Prot
Match: RB11A_DICDI (Ras-related protein Rab-11A OS=Dictyostelium discoideum GN=rab11A PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.506e-22
Identity = 51/69 (73.91%), Postives = 62/69 (89.86%), Query Frame = 2
Query:    2 ELRDHADSNIVIMLVGNKSDLRHLRAVSTEEASQFAEKHGLSFIETSALESTNVEEAFQQILTEIYNIV 208
            ELR++AD NI IMLVGNKSDLRHLR VST+EA +F+EKH L+FIETSAL+S+NVE AFQ ILT+IY+I+
Sbjct:  110 ELRENADRNIEIMLVGNKSDLRHLREVSTDEAKEFSEKHKLTFIETSALDSSNVELAFQNILTQIYHIM 178          
BLAST of CX300691 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.191e-22
Identity = 50/69 (72.46%), Postives = 57/69 (82.61%), Query Frame = 2
Query:    2 ELRDHADSNIVIMLVGNKSDLRHLRAVSTEEASQFAEKHGLSFIETSALESTNVEEAFQQILTEIYNIV 208
            ELRDH D NIVIMLVGNK+DLRHLRAVSTE+A  FAE+    F+ETSALES NVE AF ++LTEIY +V
Sbjct:  111 ELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAFTEVLTEIYKVV 179          
BLAST of CX300691 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.227e-21
Identity = 50/69 (72.46%), Postives = 58/69 (84.06%), Query Frame = 2
Query:    2 ELRDHADSNIVIMLVGNKSDLRHLRAVSTEEASQFAEKHGLSFIETSALESTNVEEAFQQILTEIYNIV 208
            ELRDHADS+IVIM+VGNKSDL HLRAVS +E    AEK GL F+ETSA+E+ NVEEAFQ I+TE+Y IV
Sbjct:  109 ELRDHADSSIVIMMVGNKSDLIHLRAVSEDEGKALAEKEGLFFLETSAMEAVNVEEAFQTIITEVYGIV 177          
BLAST of CX300691 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 3.569e-21
Identity = 49/69 (71.01%), Postives = 56/69 (81.16%), Query Frame = 2
Query:    2 ELRDHADSNIVIMLVGNKSDLRHLRAVSTEEASQFAEKHGLSFIETSALESTNVEEAFQQILTEIYNIV 208
            ELRDH D NIV+MLVGNKSDLRHL AV T+E   FAE+  L F+ETSALESTNVE AF ++LT+IY IV
Sbjct:  111 ELRDHTDPNIVVMLVGNKSDLRHLVAVQTDEGKAFAERESLYFMETSALESTNVENAFAEVLTQIYRIV 179          
BLAST of CX300691 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.569e-21
Identity = 48/69 (69.57%), Postives = 56/69 (81.16%), Query Frame = 2
Query:    2 ELRDHADSNIVIMLVGNKSDLRHLRAVSTEEASQFAEKHGLSFIETSALESTNVEEAFQQILTEIYNIV 208
            ELRDH D NIV+ML+GNKSDLRHL  VSTE+   FAEK  L F+ETSALE+TNVE AF ++LT+IY IV
Sbjct:  110 ELRDHTDPNIVVMLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYRIV 178          
BLAST of CX300691 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.661e-21
Identity = 49/69 (71.01%), Postives = 57/69 (82.61%), Query Frame = 2
Query:    2 ELRDHADSNIVIMLVGNKSDLRHLRAVSTEEASQFAEKHGLSFIETSALESTNVEEAFQQILTEIYNIV 208
            ELRDH D NIV+ML+GNKSDLRHL AVST+EA   AE+ GL F+ETSALE+TNVE AF + LT+IY IV
Sbjct:  110 ELRDHTDPNIVVMLIGNKSDLRHLVAVSTDEAKGLAEREGLYFMETSALEATNVENAFTEALTQIYRIV 178          
BLAST of CX300691 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.038e-20
Identity = 47/69 (68.12%), Postives = 56/69 (81.16%), Query Frame = 2
Query:    2 ELRDHADSNIVIMLVGNKSDLRHLRAVSTEEASQFAEKHGLSFIETSALESTNVEEAFQQILTEIYNIV 208
            ELRDH D NIV+ML+GNKSDLRHL AV TE+   FAE+  L F+ETSALE+TNVE AF ++LT+IY IV
Sbjct:  110 ELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRIV 178          
BLAST of CX300691 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.038e-20
Identity = 48/69 (69.57%), Postives = 58/69 (84.06%), Query Frame = 2
Query:    2 ELRDHADSNIVIMLVGNKSDLRHLRAVSTEEASQFAEKHGLSFIETSALESTNVEEAFQQILTEIYNIV 208
            ELR+H D NIV+MLVGNKSDLRHL AV TE+A  FAEK  L F+ETSALE+TNVE AF ++LT+I++IV
Sbjct:  110 ELRNHTDPNIVVMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIV 178          
BLAST of CX300691 vs. ExPASy Swiss-Prot
Match: RGP1_ORYSJ (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 3.021e-20
Identity = 49/69 (71.01%), Postives = 55/69 (79.71%), Query Frame = 2
Query:    2 ELRDHADSNIVIMLVGNKSDLRHLRAVSTEEASQFAEKHGLSFIETSALESTNVEEAFQQILTEIYNIV 208
            ELR HAD NIVIML+GNKSDL  LR V TE+A +FAE+  L F+ETSALESTNVE AF  +LTEIY IV
Sbjct:  115 ELRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFMTVLTEIYRIV 183          
BLAST of CX300691 vs. ExPASy Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.946e-20
Identity = 48/69 (69.57%), Postives = 57/69 (82.61%), Query Frame = 2
Query:    2 ELRDHADSNIVIMLVGNKSDLRHLRAVSTEEASQFAEKHGLSFIETSALESTNVEEAFQQILTEIYNIV 208
            ELR+HAD NIVI+L+GNK DL + R V TE+A +FAEK GL F+ETSALE+TNVE AF  +LTEIYNIV
Sbjct:  114 ELRNHADKNIVIILIGNKCDLVNQRDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTVLTEIYNIV 182          
The following BLAST results are available for this feature:
BLAST of CX300691 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
RB11A_DICDI5.506e-2273.91Ras-related protein Rab-11A OS=Dictyostelium disco... [more]
RB11B_TOBAC7.191e-2272.46Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RGP2_ORYSJ1.227e-2172.46Ras-related protein RGP2 OS=Oryza sativa subsp. ja... [more]
RIC2_ORYSJ3.569e-2171.01Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
RB11E_LOTJA3.569e-2169.57Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
YPT3_NICPL4.661e-2171.01Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]
RB11D_LOTJA1.038e-2068.12Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
RAA1C_ARATH1.038e-2069.57Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
RGP1_ORYSJ3.021e-2071.01Ras-related protein RGP1 OS=Oryza sativa subsp. ja... [more]
RB11A_LOTJA3.946e-2069.57Ras-related protein Rab11A OS=Lotus japonicus GN=R... [more]

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Properties
Property NameValue
Genbank descriptionC08001B11SK PhyRootSw1 Citrus sinensis cDNA clone C08001B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300691 ID=CX300691; Name=CX300691; organism=Citrus sinensis; type=EST; length=392bp
TGAACTCCGAGATCACGCTGACAGCAATATTGTTATTATGCTTGTTGGTA
ATAAGAGCGATCTCAGACATTTACGAGCTGTTTCTACTGAGGAAGCTTCT
CAATTCGCTGAAAAGCACGGACTTTCATTTATTGAAACTTCTGCTCTCGA
ATCTACTAATGTAGAGGAAGCTTTCCAACAAATCTTAACTGAAATTTATA
ACATTGTTGGAACTGGTACTGGACGAACTGGTGGTGGTGCTGAACCAAAG
AAAGAGGAAATTGGTGGCGGAGGAGCAAAACTCGTTTTGGACGCAGGGGG
CCAAAATCCTGGTGGTGCAAATGAAGGAAAGAAGGGCGGATGCTGTGGAT
AAAACTATCCTCAGTATTTATTTTTAATTATTTGGCCATTTT
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