CX300691

Overview
NameCX300691
Unique NameCX300691
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length392
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300691 vs. ExPASy Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.153e-20
Identity = 46/69 (66.67%), Postives = 58/69 (84.06%), Query Frame = 2
Query:    2 ELRDHADSNIVIMLVGNKSDLRHLRAVSTEEASQFAEKHGLSFIETSALESTNVEEAFQQILTEIYNIV 208
            ELRDH DSNIVI+L GNKSDL+HLRAVS ++     +K GLSF+ETSALE+ NV++AFQ ILT+IY+I+
Sbjct:  109 ELRDHRDSNIVIILAGNKSDLKHLRAVSEQDDQALVKKEGLSFLETSALEALNVDKAFQTILTDIYHII 177          
BLAST of CX300691 vs. ExPASy Swiss-Prot
Match: RB11D_TOBAC (Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.730e-20
Identity = 46/69 (66.67%), Postives = 58/69 (84.06%), Query Frame = 2
Query:    2 ELRDHADSNIVIMLVGNKSDLRHLRAVSTEEASQFAEKHGLSFIETSALESTNVEEAFQQILTEIYNIV 208
            ELR HAD NIVIML+GNK+DL   RAV TE+A +FA+K GL F+ETSA+E+TN+E+AF  +LTEI+NIV
Sbjct:  112 ELRAHADRNIVIMLIGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATNLEDAFLTVLTEIFNIV 180          
BLAST of CX300691 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.790e-20
Identity = 51/101 (50.50%), Postives = 63/101 (62.38%), Query Frame = 2
Query:    2 ELRDHADSNIVIMLVGNKSDLRHLRAVSTEEASQFAEKHGLSFIETSALESTNVEEAFQQILTEIYNIVXXXXXXXXXXAEPKKEEIGGGGAKLVLDAGGQ 304
            ELR H D NIV+ML+GNK DLRHL AV TEEA  FAE+  L F+ETSAL++TNVE AF ++LT+I+ IV              K  + GGG    L   G+
Sbjct:  110 ELRGHTDPNIVVMLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKIV-------------SKRSVDGGGESADLPGKGE 197          
BLAST of CX300691 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.958e-19
Identity = 44/68 (64.71%), Postives = 56/68 (82.35%), Query Frame = 2
Query:    2 ELRDHADSNIVIMLVGNKSDLRHLRAVSTEEASQFAEKHGLSFIETSALESTNVEEAFQQILTEIYNI 205
            EL++H D NIV+MLVGNKSDLRHL AV TE+   +AE+  L F+ETSALE+TNVE+AF ++LT+IY I
Sbjct:  110 ELKNHTDPNIVVMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRI 177          
BLAST of CX300691 vs. ExPASy Swiss-Prot
Match: RB11C_TOBAC (Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.441e-19
Identity = 45/69 (65.22%), Postives = 56/69 (81.16%), Query Frame = 2
Query:    2 ELRDHADSNIVIMLVGNKSDLRHLRAVSTEEASQFAEKHGLSFIETSALESTNVEEAFQQILTEIYNIV 208
            ELR HAD NIVIML GNK+DL   RAV TE+A +FA+K GL F+ETSA+E+T +E+AF  +LTEI+NIV
Sbjct:  112 ELRAHADRNIVIMLTGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATKLEDAFLTVLTEIFNIV 180          
BLAST of CX300691 vs. ExPASy Swiss-Prot
Match: RAB25_MOUSE (Ras-related protein Rab-25 OS=Mus musculus GN=Rab25 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 2.394e-17
Identity = 44/66 (66.67%), Postives = 52/66 (78.79%), Query Frame = 2
Query:    2 ELRDHADSNIVIMLVGNKSDLRHLRAVSTEEASQFAEKHGLSFIETSALESTNVEEAFQQILTEIY 199
            EL DHA++ IV+MLVGNKSDL   R V TEEA  FAE +GL F+ETSAL+STNVE AFQ +L EI+
Sbjct:  109 ELYDHAEATIVVMLVGNKSDLSQAREVPTEEACMFAENNGLLFLETSALDSTNVELAFQTVLKEIF 174          
BLAST of CX300691 vs. ExPASy Swiss-Prot
Match: RAB25_RABIT (Ras-related protein Rab-25 OS=Oryctolagus cuniculus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.333e-17
Identity = 43/66 (65.15%), Postives = 52/66 (78.79%), Query Frame = 2
Query:    2 ELRDHADSNIVIMLVGNKSDLRHLRAVSTEEASQFAEKHGLSFIETSALESTNVEEAFQQILTEIY 199
            EL DHA++ IV+MLVGNKSDL   R V TEEA  FAE +GL F+ETSAL+STNVE AF+ +L EI+
Sbjct:  109 ELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 174          
BLAST of CX300691 vs. ExPASy Swiss-Prot
Match: RAB25_HUMAN (Ras-related protein Rab-25 OS=Homo sapiens GN=RAB25 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 5.333e-17
Identity = 43/66 (65.15%), Postives = 52/66 (78.79%), Query Frame = 2
Query:    2 ELRDHADSNIVIMLVGNKSDLRHLRAVSTEEASQFAEKHGLSFIETSALESTNVEEAFQQILTEIY 199
            EL DHA++ IV+MLVGNKSDL   R V TEEA  FAE +GL F+ETSAL+STNVE AF+ +L EI+
Sbjct:  109 ELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 174          
BLAST of CX300691 vs. ExPASy Swiss-Prot
Match: RAB25_BOVIN (Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.965e-17
Identity = 43/66 (65.15%), Postives = 52/66 (78.79%), Query Frame = 2
Query:    2 ELRDHADSNIVIMLVGNKSDLRHLRAVSTEEASQFAEKHGLSFIETSALESTNVEEAFQQILTEIY 199
            EL DHA++ IV+MLVGNKSDL   R V TEEA  FAE +GL F+ETSAL+STNVE AF+ +L EI+
Sbjct:  109 ELYDHAEATIVVMLVGNKSDLSQSREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 174          
BLAST of CX300691 vs. ExPASy Swiss-Prot
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.700e-16
Identity = 44/92 (47.83%), Postives = 55/92 (59.78%), Query Frame = 2
Query:    2 ELRDHADSNIVIMLVGNKSDLRHLRAVSTEEASQFAEKHGLSFIETSALESTNVEEAFQQILTEIYNIVXXXXXXXXXXAEPKKEEIGGGGA 277
            + R HA+ N+ IML+GNK DL H RAV+TEE  QFA++HGL F+ETSA  + NVEEAF     EIY  +          +   K   GGG A
Sbjct:  103 DARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSNESYGIKVGYGGGNA 194          
The following BLAST results are available for this feature:
BLAST of CX300691 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
RB11A_TOBAC5.153e-2066.67Ras-related protein Rab11A OS=Nicotiana tabacum GN... [more]
RB11D_TOBAC6.730e-2066.67Ras-related protein Rab11D OS=Nicotiana tabacum GN... [more]
RAA1A_ARATH8.790e-2050.50Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]
RAA1B_ARATH1.958e-1964.71Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]
RB11C_TOBAC7.441e-1965.22Ras-related protein Rab11C OS=Nicotiana tabacum GN... [more]
RAB25_MOUSE2.394e-1766.67Ras-related protein Rab-25 OS=Mus musculus GN=Rab2... [more]
RAB25_RABIT5.333e-1765.15Ras-related protein Rab-25 OS=Oryctolagus cuniculu... [more]
RAB25_HUMAN5.333e-1765.15Ras-related protein Rab-25 OS=Homo sapiens GN=RAB2... [more]
RAB25_BOVIN6.965e-1765.15Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 ... [more]
YPTC4_CHLRE7.700e-1647.83GTP-binding protein YPTC4 OS=Chlamydomonas reinhar... [more]

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Properties
Property NameValue
Genbank descriptionC08001B11SK PhyRootSw1 Citrus sinensis cDNA clone C08001B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300691 ID=CX300691; Name=CX300691; organism=Citrus sinensis; type=EST; length=392bp
TGAACTCCGAGATCACGCTGACAGCAATATTGTTATTATGCTTGTTGGTA
ATAAGAGCGATCTCAGACATTTACGAGCTGTTTCTACTGAGGAAGCTTCT
CAATTCGCTGAAAAGCACGGACTTTCATTTATTGAAACTTCTGCTCTCGA
ATCTACTAATGTAGAGGAAGCTTTCCAACAAATCTTAACTGAAATTTATA
ACATTGTTGGAACTGGTACTGGACGAACTGGTGGTGGTGCTGAACCAAAG
AAAGAGGAAATTGGTGGCGGAGGAGCAAAACTCGTTTTGGACGCAGGGGG
CCAAAATCCTGGTGGTGCAAATGAAGGAAAGAAGGGCGGATGCTGTGGAT
AAAACTATCCTCAGTATTTATTTTTAATTATTTGGCCATTTT
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