CK939722

Overview
NameCK939722
Unique NameCK939722
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: RRP3_ASPTN (ATP-dependent rRNA helicase rrp3 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=rrp3 PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.665e-14
Identity = 34/76 (44.74%), Postives = 50/76 (65.79%), Query Frame = 3
Query:    6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 233
            IH  +SQ  RL     F+  ++ +L+ATD+  RG+DI  V+ V+NYD+P  + TY+HRVGR  R G  G+A +FV+
Sbjct:  296 IHGQLSQSARLASLNKFRARSRNLLIATDVAARGLDIPAVDYVLNYDLPQDSKTYIHRVGRTARAGKSGIAFSFVT 371          
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: RRP3_ASPFU (ATP-dependent rRNA helicase rrp3 OS=Aspergillus fumigatus GN=rrp3 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.665e-14
Identity = 39/97 (40.21%), Postives = 61/97 (62.89%), Query Frame = 3
Query:    6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKE 296
            +H  +SQ  RL     F+  ++ ILVATD+  RG+DI  V++V+N+D+P  + TY+HRVGR  R G  G+AI+FV+   D +I  +++      +KE
Sbjct:  322 LHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVDVVLNFDLPTDSKTYVHRVGRTARAGKSGVAISFVTQ-YDVEIWLRIEGALGKKLKE 417          
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: ROK1_YARLI (ATP-dependent RNA helicase ROK1 OS=Yarrowia lipolytica GN=ROK1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.665e-14
Identity = 34/83 (40.96%), Postives = 53/83 (63.86%), Query Frame = 3
Query:    6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDI 254
            IH  M+  +R +    F+ G   +L+ TD++ RGID   +N+VINYD+P SA +Y+HR+GR GR G  G A+TF +    +++
Sbjct:  394 IHGDMTAAKRASVIDRFRNGEVWVLICTDVLARGIDFRGINLVINYDVPQSAQSYVHRIGRTGRAGRLGKAVTFFTKEDATNV 476          
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: ROK1_ASPTN (ATP-dependent RNA helicase rok1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=rok1 PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.665e-14
Identity = 37/75 (49.33%), Postives = 53/75 (70.67%), Query Frame = 3
Query:    6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTK-GLAITF 227
            +HS +S  +R    KGF++G   ILV TDL+ RG+D   +N V+NYD+P+SA  Y+HRVGR GR G + G+A+T+
Sbjct:  552 LHSELSDSQRSEIMKGFRKGEIWILVTTDLLARGVDFRGINGVVNYDIPNSAAVYVHRVGRTGRAGREGGVAVTY 626          
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: PRP5_ASPTN (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=prp5 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.665e-14
Identity = 39/101 (38.61%), Postives = 59/101 (58.42%), Query Frame = 3
Query:    6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ 308
            IH G  Q +R +  + FK G   +L+AT +  RG+D++++ +V+NYD P+  + Y+HR GR GR G  G A+TF         L + Q RF VDI +  +Q
Sbjct:  831 IHGGKDQIDRDSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTF---------LTEDQERFSVDIAKALKQ 922          
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: PRP11_SCHPO (Pre-mRNA-processing ATP-dependent RNA helicase prp11 OS=Schizosaccharomyces pombe GN=prp11 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.665e-14
Identity = 35/104 (33.65%), Postives = 65/104 (62.50%), Query Frame = 3
Query:    6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDT 317
            IH G  Q +R +    +K G   +L+AT +V RG+D++ + +V+NYD P+  + Y+HRVGR GR G  G+A+TF++   +   ++  +A  ++  + +P+++ T
Sbjct:  698 IHGGKDQHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQEKYAVDIAKA-LKMSKQPVPKELQT 800          
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: DRS1_PHANO (ATP-dependent RNA helicase DRS1 OS=Phaeosphaeria nodorum GN=DRS1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.665e-14
Identity = 38/102 (37.25%), Postives = 56/102 (54.90%), Query Frame = 3
Query:    6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 311
            +H  MSQE+R+   + F+ G    L+ATD+  RG+DI+ V+ VINY+ P S + YLHRVGR  R G  G A T  +      +   V+   +   K +  Q+
Sbjct:  560 LHGNMSQEQRIQAVEAFRSGKSSYLLATDVASRGLDIKNVSTVINYEAPQSHEIYLHRVGRTARAGRSGRACTLAAEPDRKVVKQAVKQSRDQGSKVVSRQV 661          
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: DRS1_ASPTN (ATP-dependent RNA helicase drs1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=drs1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.665e-14
Identity = 38/89 (42.70%), Postives = 52/89 (58.43%), Query Frame = 3
Query:    6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 272
            +H  MSQE+R+   + F++G    L+ATDL  RG+DI+ V  VINY+ P S + YLHRVGR  R G  G A T  +      +   V+A
Sbjct:  579 LHGSMSQEQRIKSVENFRDGKVAFLLATDLASRGLDIKGVETVINYEAPQSHEIYLHRVGRTARAGRSGRACTIAAEPDRKVVKAAVKA 667          
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: DED1_MAGGR (ATP-dependent RNA helicase DED1 OS=Magnaporthe grisea GN=DED1 PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.665e-14
Identity = 40/110 (36.36%), Postives = 60/110 (54.55%), Query Frame = 3
Query:    6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYMPS 335
            IH   +Q ER    + F+ G   ILVAT +  RG+DI  V  VINYD+P   D Y+HR+GR GR G  G+A  F     +S +  ++    +   +++P  ++T+  M S
Sbjct:  479 IHGDRTQRERERALEMFRTGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFDMKDNSGVAQELLNILKEAKQDIPPFLETAARMKS 588          
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: DDX52_HUMAN (Probable ATP-dependent RNA helicase DDX52 OS=Homo sapiens GN=DDX52 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.665e-14
Identity = 39/87 (44.83%), Postives = 54/87 (62.07%), Query Frame = 3
Query:    6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQV 266
            IH+  +Q++R      F+ G   +L+ T L+ RGID + VN+VINYD P S+  Y+HR+GR GR G KG AITF +   D  +L  V
Sbjct:  442 IHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFTE-DDKPLLRSV 527          
The following BLAST results are available for this feature:
BLAST of CK939722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRP3_ASPTN4.665e-1444.74ATP-dependent rRNA helicase rrp3 OS=Aspergillus te... [more]
RRP3_ASPFU4.665e-1440.21ATP-dependent rRNA helicase rrp3 OS=Aspergillus fu... [more]
ROK1_YARLI4.665e-1440.96ATP-dependent RNA helicase ROK1 OS=Yarrowia lipoly... [more]
ROK1_ASPTN4.665e-1449.33ATP-dependent RNA helicase rok1 OS=Aspergillus ter... [more]
PRP5_ASPTN4.665e-1438.61Pre-mRNA-processing ATP-dependent RNA helicase prp... [more]
PRP11_SCHPO4.665e-1433.65Pre-mRNA-processing ATP-dependent RNA helicase prp... [more]
DRS1_PHANO4.665e-1437.25ATP-dependent RNA helicase DRS1 OS=Phaeosphaeria n... [more]
DRS1_ASPTN4.665e-1442.70ATP-dependent RNA helicase drs1 OS=Aspergillus ter... [more]
DED1_MAGGR4.665e-1436.36ATP-dependent RNA helicase DED1 OS=Magnaporthe gri... [more]
DDX52_HUMAN4.665e-1444.83Probable ATP-dependent RNA helicase DDX52 OS=Homo ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004746_F01 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIF_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939722 ID=CK939722; Name=CK939722; organism=Citrus sinensis; type=EST; length=693bp
GGGGCATCCATTCTGGCATGTCCCAAGAAGAAAGGTTGACGCGTTACAAA
GGTTTCAAGGAGGGGAACAAGAGGATTCTTGTGGCCACAGATTTGGTTGG
TAGGGGAATTGACATTGAGCGTGTCAACATTGTCATCAATTATGACATGC
CAGATTCTGCTGATACTTATCTGCACAGGGTTGGTAGAGCTGGTAGGTTT
GGCACCAAGGGCCTTGCAATTACCTTTGTATCATCTGCTTCAGACTCCGA
TATTCTCAATCAGGTTCAGGCAAGGTTTGAAGTAGATATAAAGGAGCTTC
CTGAGCAGATTGATACATCTACATACATGCCATCATAGTGGAGATCTGTT
CTCTGATGTGGAAAATTTGAGGCGCATGTGGAAGCAGGGTGCTGAAGGCC
CTTTATGTATTTGTTTCTTTAGATGAAGTCCAATGGCTTTCATATATGTT
GCCTTGGAGATTTGTCAGATGGATCCCTCTATTTTGTGGTTTTACGCTGC
CTTTTCTTGTTTTTGGGATTTGTAGCCTTTTAATACCTTCTGGGTACTGC
TGCTATTGGGAATGTTATTCAACTGGTACCTTGGCTTGTATTAGAGTTCC
TTGTGAGATAATTTTTATTGCACTGTTAATCGATTAGATTCTTAGACACC
AACTCTGGTCGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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