CK939722

Overview
NameCK939722
Unique NameCK939722
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: DEAD_SHIFL (Cold-shock DEAD box protein A OS=Shigella flexneri GN=deaD PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 7.958e-14
Identity = 35/98 (35.71%), Postives = 63/98 (64.29%), Query Frame = 3
Query:    6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKEL 299
            ++  M+Q  R    +  K+G   IL+ATD+  RG+D+ER+++V+NYD+P  +++Y+HR+GR GR G  G A+ FV +  +  +L  ++   ++ I E+
Sbjct:  275 LNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVEN-RERRLLRNIERTMKLTIPEV 371          
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: DEAD_KLEPN (Cold-shock DEAD box protein A OS=Klebsiella pneumoniae GN=deaD PE=3 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 7.958e-14
Identity = 35/98 (35.71%), Postives = 63/98 (64.29%), Query Frame = 3
Query:    6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKEL 299
            ++  M+Q  R    +  K+G   IL+ATD+  RG+D+ER+++V+NYD+P  +++Y+HR+GR GR G  G A+ FV +  +  +L  ++   ++ I E+
Sbjct:  275 LNGDMNQALREQALERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVEN-RERRLLRNIERTMKLTIPEV 371          
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: DEAD_ECOLI (Cold-shock DEAD box protein A OS=Escherichia coli (strain K12) GN=deaD PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 7.958e-14
Identity = 35/98 (35.71%), Postives = 63/98 (64.29%), Query Frame = 3
Query:    6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKEL 299
            ++  M+Q  R    +  K+G   IL+ATD+  RG+D+ER+++V+NYD+P  +++Y+HR+GR GR G  G A+ FV +  +  +L  ++   ++ I E+
Sbjct:  275 LNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVEN-RERRLLRNIERTMKLTIPEV 371          
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: DEAD_ECOL6 (Cold-shock DEAD box protein A OS=Escherichia coli O6 GN=deaD PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 7.958e-14
Identity = 35/98 (35.71%), Postives = 63/98 (64.29%), Query Frame = 3
Query:    6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKEL 299
            ++  M+Q  R    +  K+G   IL+ATD+  RG+D+ER+++V+NYD+P  +++Y+HR+GR GR G  G A+ FV +  +  +L  ++   ++ I E+
Sbjct:  275 LNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVEN-RERRLLRNIERTMKLTIPEV 371          
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: DEAD_ECO57 (Cold-shock DEAD box protein A OS=Escherichia coli O157:H7 GN=deaD PE=3 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 7.958e-14
Identity = 35/98 (35.71%), Postives = 63/98 (64.29%), Query Frame = 3
Query:    6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKEL 299
            ++  M+Q  R    +  K+G   IL+ATD+  RG+D+ER+++V+NYD+P  +++Y+HR+GR GR G  G A+ FV +  +  +L  ++   ++ I E+
Sbjct:  275 LNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVEN-RERRLLRNIERTMKLTIPEV 371          
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: DDX5_PONAB (Probable ATP-dependent RNA helicase DDX5 OS=Pongo abelii GN=DDX5 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.958e-14
Identity = 37/75 (49.33%), Postives = 47/75 (62.67%), Query Frame = 3
Query:    3 GIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 227
            GIH   SQ+ER      FK G   IL+ATD+  RG+D+E V  VINYD P+S++ Y+HR+GR  R    G A TF
Sbjct:  370 GIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTF 444          
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: DDX5_PANTR (Probable ATP-dependent RNA helicase DDX5 OS=Pan troglodytes GN=DDX5 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.958e-14
Identity = 37/75 (49.33%), Postives = 47/75 (62.67%), Query Frame = 3
Query:    3 GIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 227
            GIH   SQ+ER      FK G   IL+ATD+  RG+D+E V  VINYD P+S++ Y+HR+GR  R    G A TF
Sbjct:  370 GIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTF 444          
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: DDX5_MOUSE (Probable ATP-dependent RNA helicase DDX5 OS=Mus musculus GN=Ddx5 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.958e-14
Identity = 37/75 (49.33%), Postives = 47/75 (62.67%), Query Frame = 3
Query:    3 GIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 227
            GIH   SQ+ER      FK G   IL+ATD+  RG+D+E V  VINYD P+S++ Y+HR+GR  R    G A TF
Sbjct:  370 GIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTF 444          
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: DDX5_MACFA (Probable ATP-dependent RNA helicase DDX5 OS=Macaca fascicularis GN=DDX5 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.958e-14
Identity = 37/75 (49.33%), Postives = 47/75 (62.67%), Query Frame = 3
Query:    3 GIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 227
            GIH   SQ+ER      FK G   IL+ATD+  RG+D+E V  VINYD P+S++ Y+HR+GR  R    G A TF
Sbjct:  370 GIHGDKSQQERGWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTF 444          
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: DDX5_HUMAN (Probable ATP-dependent RNA helicase DDX5 OS=Homo sapiens GN=DDX5 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.958e-14
Identity = 37/75 (49.33%), Postives = 47/75 (62.67%), Query Frame = 3
Query:    3 GIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 227
            GIH   SQ+ER      FK G   IL+ATD+  RG+D+E V  VINYD P+S++ Y+HR+GR  R    G A TF
Sbjct:  370 GIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTF 444          
The following BLAST results are available for this feature:
BLAST of CK939722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DEAD_SHIFL7.958e-1435.71Cold-shock DEAD box protein A OS=Shigella flexneri... [more]
DEAD_KLEPN7.958e-1435.71Cold-shock DEAD box protein A OS=Klebsiella pneumo... [more]
DEAD_ECOLI7.958e-1435.71Cold-shock DEAD box protein A OS=Escherichia coli ... [more]
DEAD_ECOL67.958e-1435.71Cold-shock DEAD box protein A OS=Escherichia coli ... [more]
DEAD_ECO577.958e-1435.71Cold-shock DEAD box protein A OS=Escherichia coli ... [more]
DDX5_PONAB7.958e-1449.33Probable ATP-dependent RNA helicase DDX5 OS=Pongo ... [more]
DDX5_PANTR7.958e-1449.33Probable ATP-dependent RNA helicase DDX5 OS=Pan tr... [more]
DDX5_MOUSE7.958e-1449.33Probable ATP-dependent RNA helicase DDX5 OS=Mus mu... [more]
DDX5_MACFA7.958e-1449.33Probable ATP-dependent RNA helicase DDX5 OS=Macaca... [more]
DDX5_HUMAN7.958e-1449.33Probable ATP-dependent RNA helicase DDX5 OS=Homo s... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004746_F01 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIF_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939722 ID=CK939722; Name=CK939722; organism=Citrus sinensis; type=EST; length=693bp
GGGGCATCCATTCTGGCATGTCCCAAGAAGAAAGGTTGACGCGTTACAAA
GGTTTCAAGGAGGGGAACAAGAGGATTCTTGTGGCCACAGATTTGGTTGG
TAGGGGAATTGACATTGAGCGTGTCAACATTGTCATCAATTATGACATGC
CAGATTCTGCTGATACTTATCTGCACAGGGTTGGTAGAGCTGGTAGGTTT
GGCACCAAGGGCCTTGCAATTACCTTTGTATCATCTGCTTCAGACTCCGA
TATTCTCAATCAGGTTCAGGCAAGGTTTGAAGTAGATATAAAGGAGCTTC
CTGAGCAGATTGATACATCTACATACATGCCATCATAGTGGAGATCTGTT
CTCTGATGTGGAAAATTTGAGGCGCATGTGGAAGCAGGGTGCTGAAGGCC
CTTTATGTATTTGTTTCTTTAGATGAAGTCCAATGGCTTTCATATATGTT
GCCTTGGAGATTTGTCAGATGGATCCCTCTATTTTGTGGTTTTACGCTGC
CTTTTCTTGTTTTTGGGATTTGTAGCCTTTTAATACCTTCTGGGTACTGC
TGCTATTGGGAATGTTATTCAACTGGTACCTTGGCTTGTATTAGAGTTCC
TTGTGAGATAATTTTTATTGCACTGTTAATCGATTAGATTCTTAGACACC
AACTCTGGTCGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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