CK939722

Overview
NameCK939722
Unique NameCK939722
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: RHLB_PSEAE (ATP-dependent RNA helicase rhlB OS=Pseudomonas aeruginosa GN=rhlB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13
Identity = 33/68 (48.53%), Postives = 49/68 (72.06%), Query Frame = 3
Query:   24 QEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 227
            Q +R+   +GF+EG  R+LVATD+ GRGI I+ ++ VIN+ +P+  D Y+HR+GR GR G  G +I+F
Sbjct:  293 QHKRIRTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISF 360          
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: RHLB_PSEAB (ATP-dependent RNA helicase rhlB OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=rhlB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13
Identity = 33/68 (48.53%), Postives = 49/68 (72.06%), Query Frame = 3
Query:   24 QEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 227
            Q +R+   +GF+EG  R+LVATD+ GRGI I+ ++ VIN+ +P+  D Y+HR+GR GR G  G +I+F
Sbjct:  293 QHKRIRTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISF 360          
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: RHLB_PSEA8 (ATP-dependent RNA helicase rhlB OS=Pseudomonas aeruginosa (strain LESB58) GN=rhlB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13
Identity = 33/68 (48.53%), Postives = 49/68 (72.06%), Query Frame = 3
Query:   24 QEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 227
            Q +R+   +GF+EG  R+LVATD+ GRGI I+ ++ VIN+ +P+  D Y+HR+GR GR G  G +I+F
Sbjct:  293 QHKRIRTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISF 360          
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: RH5_ARATH (DEAD-box ATP-dependent RNA helicase 5 OS=Arabidopsis thaliana GN=RH5 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13
Identity = 37/74 (50.00%), Postives = 48/74 (64.86%), Query Frame = 3
Query:    6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 227
            IH   +Q ER      FKEG+  +LVATD+  RG+DI  V +VINY  P + + Y+HR+GR GR G KG+A TF
Sbjct:  396 IHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTF 469          
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: RH30_ARATH (DEAD-box ATP-dependent RNA helicase 30 OS=Arabidopsis thaliana GN=RH30 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13
Identity = 33/74 (44.59%), Postives = 47/74 (63.51%), Query Frame = 3
Query:    6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 227
            IH   +Q ER      FK G   I+ ATD+  RG+D++ +  V+NYD P++ + Y+HR+GR GR G KG+A TF
Sbjct:  440 IHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTF 513          
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: RH20_ARATH (DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana GN=RH20 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13
Identity = 37/79 (46.84%), Postives = 48/79 (60.76%), Query Frame = 3
Query:    6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 242
            IH   SQ ER      F+ G   I+ ATD+  RG+D++ V  VINYD P S + Y+HR+GR GR G KG A TF + A+
Sbjct:  374 IHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVAN 452          
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: PRP5_EMENI (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Emericella nidulans GN=prp5 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13
Identity = 38/101 (37.62%), Postives = 59/101 (58.42%), Query Frame = 3
Query:    6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ 308
            IH G  Q +R +  + FK G   +L+AT +  RG+D++++ +V+NYD P+  + Y+HR GR GR G  G A+TF         L + Q R+ VDI +  +Q
Sbjct:  823 IHGGKDQIDRDSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTF---------LTEDQERYSVDIAKALKQ 914          
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: PRP5_DEBHA (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Debaryomyces hansenii GN=PRP5 PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13
Identity = 40/91 (43.96%), Postives = 54/91 (59.34%), Query Frame = 3
Query:    6 IHSGMSQEERLTRYKGFKEGNK--RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 272
            IH G  Q +R    + F   N    IL+AT +  RG+D++ +N+VINY+     + Y+HRVGR GR G KG AITFVSS     I + V+A
Sbjct:  604 IHGGKDQIDRKHAIREFSSSNSGVNILIATSIAARGLDVKGLNLVINYEAASHMEDYVHRVGRTGRAGRKGTAITFVSSKQGRAITDLVKA 694          
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: PRP5_ASPNC (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=prp5 PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13
Identity = 38/101 (37.62%), Postives = 59/101 (58.42%), Query Frame = 3
Query:    6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ 308
            IH G  Q +R +  + FK G   +L+AT +  RG+D++++ +V+NYD P+  + Y+HR GR GR G  G A+TF         L + Q R+ VDI +  +Q
Sbjct:  829 IHGGKDQIDRDSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTF---------LTEDQERYSVDIAKALKQ 920          
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: PRP5_ASPFU (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus fumigatus GN=prp5 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13
Identity = 38/101 (37.62%), Postives = 58/101 (57.43%), Query Frame = 3
Query:    6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ 308
            IH G  Q +R +  + FK G   +L+AT +  RG+D++++ +V+NYD P+  + Y+HR GR GR G  G A+TF         L + Q R+ VDI +   Q
Sbjct:  857 IHGGKDQIDRDSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTF---------LTEEQERYSVDIAKALRQ 948          
The following BLAST results are available for this feature:
BLAST of CK939722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHLB_PSEAE1.039e-1348.53ATP-dependent RNA helicase rhlB OS=Pseudomonas aer... [more]
RHLB_PSEAB1.039e-1348.53ATP-dependent RNA helicase rhlB OS=Pseudomonas aer... [more]
RHLB_PSEA81.039e-1348.53ATP-dependent RNA helicase rhlB OS=Pseudomonas aer... [more]
RH5_ARATH1.039e-1350.00DEAD-box ATP-dependent RNA helicase 5 OS=Arabidops... [more]
RH30_ARATH1.039e-1344.59DEAD-box ATP-dependent RNA helicase 30 OS=Arabidop... [more]
RH20_ARATH1.039e-1346.84DEAD-box ATP-dependent RNA helicase 20 OS=Arabidop... [more]
PRP5_EMENI1.039e-1337.62Pre-mRNA-processing ATP-dependent RNA helicase prp... [more]
PRP5_DEBHA1.039e-1343.96Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]
PRP5_ASPNC1.039e-1337.62Pre-mRNA-processing ATP-dependent RNA helicase prp... [more]
PRP5_ASPFU1.039e-1337.62Pre-mRNA-processing ATP-dependent RNA helicase prp... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004746_F01 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIF_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939722 ID=CK939722; Name=CK939722; organism=Citrus sinensis; type=EST; length=693bp
GGGGCATCCATTCTGGCATGTCCCAAGAAGAAAGGTTGACGCGTTACAAA
GGTTTCAAGGAGGGGAACAAGAGGATTCTTGTGGCCACAGATTTGGTTGG
TAGGGGAATTGACATTGAGCGTGTCAACATTGTCATCAATTATGACATGC
CAGATTCTGCTGATACTTATCTGCACAGGGTTGGTAGAGCTGGTAGGTTT
GGCACCAAGGGCCTTGCAATTACCTTTGTATCATCTGCTTCAGACTCCGA
TATTCTCAATCAGGTTCAGGCAAGGTTTGAAGTAGATATAAAGGAGCTTC
CTGAGCAGATTGATACATCTACATACATGCCATCATAGTGGAGATCTGTT
CTCTGATGTGGAAAATTTGAGGCGCATGTGGAAGCAGGGTGCTGAAGGCC
CTTTATGTATTTGTTTCTTTAGATGAAGTCCAATGGCTTTCATATATGTT
GCCTTGGAGATTTGTCAGATGGATCCCTCTATTTTGTGGTTTTACGCTGC
CTTTTCTTGTTTTTGGGATTTGTAGCCTTTTAATACCTTCTGGGTACTGC
TGCTATTGGGAATGTTATTCAACTGGTACCTTGGCTTGTATTAGAGTTCC
TTGTGAGATAATTTTTATTGCACTGTTAATCGATTAGATTCTTAGACACC
AACTCTGGTCGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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