CK939722
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: RHLB_PSEAE (ATP-dependent RNA helicase rhlB OS=Pseudomonas aeruginosa GN=rhlB PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13 Identity = 33/68 (48.53%), Postives = 49/68 (72.06%), Query Frame = 3 Query: 24 QEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 227 Q +R+ +GF+EG R+LVATD+ GRGI I+ ++ VIN+ +P+ D Y+HR+GR GR G G +I+F Sbjct: 293 QHKRIRTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISF 360
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: RHLB_PSEAB (ATP-dependent RNA helicase rhlB OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=rhlB PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13 Identity = 33/68 (48.53%), Postives = 49/68 (72.06%), Query Frame = 3 Query: 24 QEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 227 Q +R+ +GF+EG R+LVATD+ GRGI I+ ++ VIN+ +P+ D Y+HR+GR GR G G +I+F Sbjct: 293 QHKRIRTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISF 360
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: RHLB_PSEA8 (ATP-dependent RNA helicase rhlB OS=Pseudomonas aeruginosa (strain LESB58) GN=rhlB PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13 Identity = 33/68 (48.53%), Postives = 49/68 (72.06%), Query Frame = 3 Query: 24 QEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 227 Q +R+ +GF+EG R+LVATD+ GRGI I+ ++ VIN+ +P+ D Y+HR+GR GR G G +I+F Sbjct: 293 QHKRIRTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGTSISF 360
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: RH5_ARATH (DEAD-box ATP-dependent RNA helicase 5 OS=Arabidopsis thaliana GN=RH5 PE=1 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13 Identity = 37/74 (50.00%), Postives = 48/74 (64.86%), Query Frame = 3 Query: 6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 227 IH +Q ER FKEG+ +LVATD+ RG+DI V +VINY P + + Y+HR+GR GR G KG+A TF Sbjct: 396 IHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTF 469
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: RH30_ARATH (DEAD-box ATP-dependent RNA helicase 30 OS=Arabidopsis thaliana GN=RH30 PE=2 SV=2) HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13 Identity = 33/74 (44.59%), Postives = 47/74 (63.51%), Query Frame = 3 Query: 6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITF 227 IH +Q ER FK G I+ ATD+ RG+D++ + V+NYD P++ + Y+HR+GR GR G KG+A TF Sbjct: 440 IHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTF 513
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: RH20_ARATH (DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana GN=RH20 PE=1 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13 Identity = 37/79 (46.84%), Postives = 48/79 (60.76%), Query Frame = 3 Query: 6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAS 242 IH SQ ER F+ G I+ ATD+ RG+D++ V VINYD P S + Y+HR+GR GR G KG A TF + A+ Sbjct: 374 IHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVAN 452
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: PRP5_EMENI (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Emericella nidulans GN=prp5 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13 Identity = 38/101 (37.62%), Postives = 59/101 (58.42%), Query Frame = 3 Query: 6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ 308 IH G Q +R + + FK G +L+AT + RG+D++++ +V+NYD P+ + Y+HR GR GR G G A+TF L + Q R+ VDI + +Q Sbjct: 823 IHGGKDQIDRDSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTF---------LTEDQERYSVDIAKALKQ 914
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: PRP5_DEBHA (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Debaryomyces hansenii GN=PRP5 PE=3 SV=2) HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13 Identity = 40/91 (43.96%), Postives = 54/91 (59.34%), Query Frame = 3 Query: 6 IHSGMSQEERLTRYKGFKEGNK--RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQA 272 IH G Q +R + F N IL+AT + RG+D++ +N+VINY+ + Y+HRVGR GR G KG AITFVSS I + V+A Sbjct: 604 IHGGKDQIDRKHAIREFSSSNSGVNILIATSIAARGLDVKGLNLVINYEAASHMEDYVHRVGRTGRAGRKGTAITFVSSKQGRAITDLVKA 694
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: PRP5_ASPNC (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=prp5 PE=3 SV=2) HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13 Identity = 38/101 (37.62%), Postives = 59/101 (58.42%), Query Frame = 3 Query: 6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ 308 IH G Q +R + + FK G +L+AT + RG+D++++ +V+NYD P+ + Y+HR GR GR G G A+TF L + Q R+ VDI + +Q Sbjct: 829 IHGGKDQIDRDSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTF---------LTEDQERYSVDIAKALKQ 920
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: PRP5_ASPFU (Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Aspergillus fumigatus GN=prp5 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.039e-13 Identity = 38/101 (37.62%), Postives = 58/101 (57.43%), Query Frame = 3 Query: 6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ 308 IH G Q +R + + FK G +L+AT + RG+D++++ +V+NYD P+ + Y+HR GR GR G G A+TF L + Q R+ VDI + Q Sbjct: 857 IHGGKDQIDRDSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTF---------LTEEQERYSVDIAKALRQ 948 The following BLAST results are available for this feature:
BLAST of CK939722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939722 ID=CK939722; Name=CK939722; organism=Citrus sinensis; type=EST; length=693bpback to top |