CK939722

Overview
NameCK939722
Unique NameCK939722
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: IF4A_PICST (ATP-dependent RNA helicase eIF4A OS=Pichia stipitis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.655e-22
Identity = 47/102 (46.08%), Postives = 73/102 (71.57%), Query Frame = 3
Query:    6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 311
            IH+ + Q ER T  K F+ G+ RIL+ATDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV+   D  ++ +++  +   I+E+P  I
Sbjct:  292 IHADLPQAERDTIMKEFRSGSSRILIATDLLARGIDVQQVSLVINYDLPSNKENYIHRIGRGGRFGRKGVAINFVTE-RDVGMMREIEQFYSTQIEEMPADI 392          
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: IF4A_KLULA (ATP-dependent RNA helicase eIF4A OS=Kluyveromyces lactis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.655e-22
Identity = 47/102 (46.08%), Postives = 74/102 (72.55%), Query Frame = 3
Query:    6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 311
            I+S + Q+ER T  K F+ G+ RIL++TDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV++  D   + +++  +   I+ELP  I
Sbjct:  291 IYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYIHRIGRGGRFGRKGIAINFVTN-KDIGAMRELERFYSTQIEELPSSI 391          
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: IF4A_CANGA (ATP-dependent RNA helicase eIF4A OS=Candida glabrata GN=TIF1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.655e-22
Identity = 48/104 (46.15%), Postives = 74/104 (71.15%), Query Frame = 3
Query:    6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDT 317
            I+S + Q+ER T  K F+ G+ RIL++TDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI F+ +  D   L +++  +   I+ELP  I T
Sbjct:  291 IYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPTNKENYIHRIGRGGRFGRKGVAINFIVN-EDVQALRELEQFYSTQIEELPSDIGT 393          
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: IF4A_YEAST (ATP-dependent RNA helicase eIF4A OS=Saccharomyces cerevisiae GN=TIF1 PE=1 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 6.079e-22
Identity = 48/104 (46.15%), Postives = 75/104 (72.12%), Query Frame = 3
Query:    6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDT 317
            I+S + Q+ER T  K F+ G+ RIL++TDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV++  D   + +++  +   I+ELP  I T
Sbjct:  290 IYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTN-EDVGAMRELEKFYSTQIEELPSDIAT 392          
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: IF4A_YEAS7 (ATP-dependent RNA helicase eIF4A OS=Saccharomyces cerevisiae (strain YJM789) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.079e-22
Identity = 48/104 (46.15%), Postives = 75/104 (72.12%), Query Frame = 3
Query:    6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDT 317
            I+S + Q+ER T  K F+ G+ RIL++TDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV++  D   + +++  +   I+ELP  I T
Sbjct:  290 IYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTN-EDVGAMRELEKFYSTQIEELPSDIAT 392          
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: IF4A_LEIMA (Probable eukaryotic initiation factor 4A OS=Leishmania major GN=LMJ_0078 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.037e-21
Identity = 48/108 (44.44%), Postives = 74/108 (68.52%), Query Frame = 3
Query:    6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 329
            +H+ M + +R      F+ G+ R+LV TDLV RGID+  VNIVIN+D+P + + YLHR+GR GR+G KG+AI FV+   D ++L++++A +   I ELP  +D + Y+
Sbjct:  297 MHAEMPKSDRERVMNTFRSGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKENYLHRIGRGGRYGRKGVAINFVTE-KDVELLHEIEAHYHTQIDELP--VDFAAYL 401          
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: IF4A_LEIIN (Probable eukaryotic initiation factor 4A OS=Leishmania infantum GN=LinJ01.0780 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.037e-21
Identity = 48/108 (44.44%), Postives = 74/108 (68.52%), Query Frame = 3
Query:    6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 329
            +H+ M + +R      F+ G+ R+LV TDLV RGID+  VNIVIN+D+P + + YLHR+GR GR+G KG+AI FV+   D ++L++++A +   I ELP  +D + Y+
Sbjct:  297 MHAEMPKSDRERVMNTFRSGSSRVLVTTDLVARGIDVHHVNIVINFDLPTNKENYLHRIGRGGRYGRKGVAINFVTE-KDVELLHEIEAHYHTQIDELP--VDFAAYL 401          
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: IF4A_CANAL (ATP-dependent RNA helicase eIF4A OS=Candida albicans GN=TIF1 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.769e-21
Identity = 46/102 (45.10%), Postives = 73/102 (71.57%), Query Frame = 3
Query:    6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 311
            IH+ + Q ER T  K F+ G+ RIL++TDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV+   D  ++ +++  +   I+E+P  I
Sbjct:  292 IHADLPQAERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTD-RDVGMMREIEKFYSTQIEEMPADI 392          
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: FAL1_NEUCR (ATP-dependent RNA helicase fal-1 OS=Neurospora crassa GN=fal-1 PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.769e-21
Identity = 45/102 (44.12%), Postives = 73/102 (71.57%), Query Frame = 3
Query:    6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 311
            +H  M Q+ER +  + F++GN R+L++TD+  RGID+++V++VINYD+P + + Y+HR+GR+GRFG KG+AI FV+S  D  IL  ++  +   I E+P  +
Sbjct:  295 MHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTS-EDVRILRDIELYYSTQIDEMPMNV 395          
BLAST of CK939722 vs. ExPASy Swiss-Prot
Match: FAL1_MAGGR (ATP-dependent RNA helicase FAL1 OS=Magnaporthe grisea GN=FAL1 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.769e-21
Identity = 45/102 (44.12%), Postives = 73/102 (71.57%), Query Frame = 3
Query:    6 IHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 311
            +H  M Q+ER +  + F++GN R+L++TD+  RGID+++V++VINYD+P + + Y+HR+GR+GRFG KG+AI FV+S  D  IL  ++  +   I E+P  +
Sbjct:  296 MHGDMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTS-EDVRILRDIELYYSTQIDEMPMNV 396          
The following BLAST results are available for this feature:
BLAST of CK939722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A_PICST4.655e-2246.08ATP-dependent RNA helicase eIF4A OS=Pichia stipiti... [more]
IF4A_KLULA4.655e-2246.08ATP-dependent RNA helicase eIF4A OS=Kluyveromyces ... [more]
IF4A_CANGA4.655e-2246.15ATP-dependent RNA helicase eIF4A OS=Candida glabra... [more]
IF4A_YEAST6.079e-2246.15ATP-dependent RNA helicase eIF4A OS=Saccharomyces ... [more]
IF4A_YEAS76.079e-2246.15ATP-dependent RNA helicase eIF4A OS=Saccharomyces ... [more]
IF4A_LEIMA1.037e-2144.44Probable eukaryotic initiation factor 4A OS=Leishm... [more]
IF4A_LEIIN1.037e-2144.44Probable eukaryotic initiation factor 4A OS=Leishm... [more]
IF4A_CANAL1.769e-2145.10ATP-dependent RNA helicase eIF4A OS=Candida albica... [more]
FAL1_NEUCR1.769e-2144.12ATP-dependent RNA helicase fal-1 OS=Neurospora cra... [more]
FAL1_MAGGR1.769e-2144.12ATP-dependent RNA helicase FAL1 OS=Magnaporthe gri... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004746_F01 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIF_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939722 ID=CK939722; Name=CK939722; organism=Citrus sinensis; type=EST; length=693bp
GGGGCATCCATTCTGGCATGTCCCAAGAAGAAAGGTTGACGCGTTACAAA
GGTTTCAAGGAGGGGAACAAGAGGATTCTTGTGGCCACAGATTTGGTTGG
TAGGGGAATTGACATTGAGCGTGTCAACATTGTCATCAATTATGACATGC
CAGATTCTGCTGATACTTATCTGCACAGGGTTGGTAGAGCTGGTAGGTTT
GGCACCAAGGGCCTTGCAATTACCTTTGTATCATCTGCTTCAGACTCCGA
TATTCTCAATCAGGTTCAGGCAAGGTTTGAAGTAGATATAAAGGAGCTTC
CTGAGCAGATTGATACATCTACATACATGCCATCATAGTGGAGATCTGTT
CTCTGATGTGGAAAATTTGAGGCGCATGTGGAAGCAGGGTGCTGAAGGCC
CTTTATGTATTTGTTTCTTTAGATGAAGTCCAATGGCTTTCATATATGTT
GCCTTGGAGATTTGTCAGATGGATCCCTCTATTTTGTGGTTTTACGCTGC
CTTTTCTTGTTTTTGGGATTTGTAGCCTTTTAATACCTTCTGGGTACTGC
TGCTATTGGGAATGTTATTCAACTGGTACCTTGGCTTGTATTAGAGTTCC
TTGTGAGATAATTTTTATTGCACTGTTAATCGATTAGATTCTTAGACACC
AACTCTGGTCGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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