CK939720

Overview
NameCK939720
Unique NameCK939720
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939720 vs. ExPASy Swiss-Prot
Match: GL111_ORYSJ (Germin-like protein 11-1 OS=Oryza sativa subsp. japonica GN=Os11g0537300 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.364e-26
Identity = 69/175 (39.43%), Postives = 88/175 (50.29%), Query Frame = 2
Query:  122 TDPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARVEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSI 646
            +D   LQDVC      +  +F+NG FCK P      DF    L   G+  N +          + PGLNTLGIS  R D A  G   PH HPRASE+  V  G++  GF  +      L  K L +GDVF+FP+GL+HF  N G   A  +S LNSQ PG V I   +F  +  +
Sbjct:   23 SDSPPLQDVCPMAPQGERKLFMNGFFCKSPSTIMASDFKTLLLNHAGDLDNMVRSSANIITATEFPGLNTLGISMARTDIAVSGAVLPHSHPRASEMMFVHSGSVVAGFFDT---KGKLFQKTLAEGDVFIFPRGLVHFIMNYGFGLATTFSVLNSQNPGVVGITHAMFAPDSEV 194          
BLAST of CK939720 vs. ExPASy Swiss-Prot
Match: GL31_ORYSJ (Germin-like protein 3-1 OS=Oryza sativa subsp. japonica GN=Os03g0179000 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 9.722e-26
Identity = 77/200 (38.50%), Postives = 106/200 (53.00%), Query Frame = 2
Query:  125 DPGHLQDVCVAINDPKD--GVF-VNGKFCKDPKLARVEDFFFSGLGKPGNTANRL-GVDET-DANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIG-KTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQ 706
            DP  L D CVA        G F +NG  C DP LAR + F  S L +  N A  L G + T  +    +PG N  G++  RID AP G  PPH HPRASE  LVL G++ VGF  +   +  L  ++L  G+ FVFP+ ++HF +N+     A   S LNSQ PG   +  + F   P +  + L KAF++  + V+ +Q
Sbjct:   23 DPDLLFDYCVADTAAATAAGAFHLNGLACIDPALARADHFATSALSRATNPAATLYGFNATLTSPAASLPGANAQGLAMARIDLAPGGMAPPHSHPRASEAALVLSGSVLVGFADT---SYRLYTQLLRAGEAFVFPRAMVHFLYNMDTAAPAVVLSGLNSQSPGAQLVPFSAFRTEPRLPDEVLKKAFKITGQDVQRIQ 219          
BLAST of CK939720 vs. ExPASy Swiss-Prot
Match: GL814_ORYSJ (Germin-like protein 8-14 OS=Oryza sativa subsp. japonica GN=GER5 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.302e-25
Identity = 68/160 (42.50%), Postives = 93/160 (58.13%), Query Frame = 2
Query:  230 DFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQN 709
            DF + GL   GNT+N +    T A V Q PG+N LGISA R+D A  G  P H HP ASE+  V +GT+  GF+TS   +NT+  + L  GD+ VFPQGL+H+Q+N G++ A A  A +   PG + I D    AN ++    + K   LD   VK L++
Sbjct:   52 DFAYHGLAAAGNTSNLIKAAVTPAFVGQFPGVNGLGISAARLDIAVGGVVPLHTHPAASELLFVTQGTVAAGFITSS--SNTVYTRTLYAGDIMVFPQGLLHYQYNAGQSAAVALVAFSGPNPG-LQITDYALFAN-NLPSAIVEKVTFLDDAQVKKLKS 207          
BLAST of CK939720 vs. ExPASy Swiss-Prot
Match: GLP1_IPONI (Germin-like protein OS=Ipomoea nil GN=GLP PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.516e-23
Identity = 67/155 (43.23%), Postives = 83/155 (53.55%), Query Frame = 2
Query:  137 LQDVCVAINDPKDGVFVNGKFCKDPKLARVEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPG 601
            + D CVA N P      +G  CK+       DF +SGL KPGNT N +    T A V Q PG+  LG++  R+D AP G  P H HP ASEI  V+EGT+   F++S    N +  K L  GDV VFPQGL+ FQ   GK  A     L  + PG
Sbjct:   24 VNDFCVA-NGPGARDTPSGFVCKNTAKVTAADFVYSGLAKPGNTTNIINAAVTPAFVGQFPGVIGLGVTLARLDLAPGGVIPMHTHPGASEILNVVEGTILAAFISS---GNKVYEKALYPGDVMVFPQGLLDFQEITGKI-APGLCELRQRNPG 173          
BLAST of CK939720 vs. ExPASy Swiss-Prot
Match: GL92_ORYSJ (Putative germin-like protein 9-2 OS=Oryza sativa subsp. japonica GN=Os09g0568600 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.521e-22
Identity = 65/161 (40.37%), Postives = 91/161 (56.52%), Query Frame = 2
Query:  230 DFF-FSGLGKPGNTANRLGVDE---TDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLD-PKIVK 697
            DFF F+G  K  NT++    +    T A + + P LN   +S   + + P    PPH HPR++E+ LV++G L VGF+ +    N L  + L  GD+FVFP+G++HFQFN G   A A SA  S  PG V +  TVFG    I+   L K+F+ D P I+K
Sbjct:   48 DFFTFTGFRKVFNTSSAPEPNSFTVTKATMAEFPALNGQSVSYATLVFPPSTVNPPHTHPRSAELLLVVDGALSVGFIDT---TNKLYTQDLAAGDMFVFPKGMVHFQFNSGNQPAMALSAFGSAAPGVVPVPVTVFGT--GIDDAVLAKSFKTDVPTILK 203          
BLAST of CK939720 vs. ExPASy Swiss-Prot
Match: GL93_ORYSJ (Germin-like protein 9-3 OS=Oryza sativa subsp. japonica GN=Os09g0568700 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.416e-21
Identity = 56/138 (40.58%), Postives = 80/138 (57.97%), Query Frame = 2
Query:  293 TDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQ 706
            T A + + P LN   +S   + Y P    PPH HPR++E+ L+++G L VGFV +    N L  + L  GD+FVFP+G++HFQFN G   A A SA  S   G V++  TVFG N  I+   L K+F+ D   ++ L+
Sbjct:   73 TKATMAEFPALNGQSVSYAVLMYPPATLNPPHTHPRSAELLLLVDGALSVGFVDT---TNKLYTQDLAAGDMFVFPKGMVHFQFNSGNQPAMALSAFGSAAAGLVSVPVTVFGTN--IDDAVLAKSFKTDVPTIQKLK 205          
BLAST of CK939720 vs. ExPASy Swiss-Prot
Match: GL91_ORYSJ (Germin-like protein 9-1 OS=Oryza sativa subsp. japonica GN=Os09g0568500 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.564e-18
Identity = 54/150 (36.00%), Postives = 82/150 (54.67%), Query Frame = 2
Query:  260 GNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIG-KTNAAAYSALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQ 706
            GN+ +   +  T A   + P L    +S   + +      PPHIHPRASE+ +V++G L VG V + + N T+  + L  GD+FVFP+G++HFQFN G    A A+SA  S  PG +++   +FG+   I+   L K+   D   V  L+
Sbjct:   58 GNSGDPAKLTVTKATHAEFPALLGQSVSYAALVFGAGTVNPPHIHPRASELLVVVQGPLLVGLVDAAR-NGTVYTQTLQTGDMFVFPKGMVHFQFNNGTDVVARAFSAFGSATPGTISLPAALFGS--GIDDTILDKSMHTDQATVDQLK 204          
The following BLAST results are available for this feature:
BLAST of CK939720 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
GL111_ORYSJ4.364e-2639.43Germin-like protein 11-1 OS=Oryza sativa subsp. ja... [more]
GL31_ORYSJ9.722e-2638.50Germin-like protein 3-1 OS=Oryza sativa subsp. jap... [more]
GL814_ORYSJ6.302e-2542.50Germin-like protein 8-14 OS=Oryza sativa subsp. ja... [more]
GLP1_IPONI4.516e-2343.23Germin-like protein OS=Ipomoea nil GN=GLP PE=2 SV=... [more]
GL92_ORYSJ6.521e-2240.37Putative germin-like protein 9-2 OS=Oryza sativa s... [more]
GL93_ORYSJ9.416e-2140.58Germin-like protein 9-3 OS=Oryza sativa subsp. jap... [more]
GL91_ORYSJ2.564e-1836.00Germin-like protein 9-1 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004746_E10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIF_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939720 ID=CK939720; Name=CK939720; organism=Citrus sinensis; type=EST; length=847bp
GGGACACAACACTTGATTAAAGTTTGAGATAGGCACATCCTGTGACTTAA
TCACCATGAAGGTAATTCAATTTCTTATAGGTTTTGCCCTCTTGGCTTTG
GCTTCTTCTTTGGCCTCTGCCACTGACCCTGGCCATCTTCAAGATGTCTG
TGTAGCCATCAATGACCCCAAGGATGGTGTGTTTGTGAATGGGAAGTTCT
GCAAGGACCCCAAGCTTGCGAGAGTAGAAGATTTCTTCTTCTCAGGGCTA
GGCAAGCCTGGAAACACAGCAAATCGACTTGGTGTTGATGAAACAGATGC
AAATGTTGAGCAAATTCCAGGACTCAACACCCTTGGCATATCAGCATTCC
GTATTGACTATGCACCATATGGCCAAAGGCCACCTCACATTCACCCCCGT
GCCAGCGAAATCTTCTTAGTCCTGGAAGGAACTCTTTATGTCGGTTTTGT
GACATCAGACCAACTGAATAACACACTCATCGCAAAAGTTCTAAATAAGG
GAGATGTTTTTGTGTTTCCACAAGGTTTGATTCACTTCCAATTCAACATT
GGAAAAACAAATGCAGCTGCCTATTCTGCTCTAAACAGCCAATTCCCGGG
TGAAGTTACCATAGCCGACACAGTCTTTGGAGCCAATCCTTCAATCAATC
CCGATTTTCTTGGCAAGGCATTCCAGTTGGACCCAAAGATAGTGAAAGAT
CTTCAAAATAAGTTCATTAATGGCAATTAGGAGAAGGAATTAATGAGCTT
TAATATAAATGGCCTCTTCACTAGTGGCTGTATTACTTTATCTCCAGATT
ATCATATCTTAATTAATGTAATAAAAGAGGTCTCTCATGAANNNNNC
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