CK939686 | Citrus Genome Database

Overview


Name	CK939686
Unique Name	CK939686
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	624

Libraries


Library Name	Type
Developing fruit flavedo at 165 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_EUCGG (ATP synthase subunit c, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.808e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 3

Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_DRIGR (ATP synthase subunit c, chloroplastic OS=Drimys granadensis GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.808e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 3

Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_DIOEL (ATP synthase subunit c, chloroplastic OS=Dioscorea elephantipes GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.808e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 3

Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_DAUCA (ATP synthase subunit c, chloroplastic OS=Daucus carota GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.808e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 3

Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_CUSRE (ATP synthase subunit C, plastid OS=Cuscuta reflexa GN=atpE PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.808e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 3

Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_CUSEX (ATP synthase subunit C, plastid OS=Cuscuta exaltata GN=atpE PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.808e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 3

Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_CUCSA (ATP synthase subunit c, chloroplastic OS=Cucumis sativus GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.808e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 3

Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_COFAR (ATP synthase subunit c, chloroplastic OS=Coffea arabica GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.808e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 3

Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_CITSI (ATP synthase subunit c, chloroplastic OS=Citrus sinensis GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.808e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 3

Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

[Close]

BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_CHLSC (ATP synthase subunit c, chloroplastic OS=Chloranthus spicatus GN=atpH PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.808e-25
Identity = 65/81 (80.25%), Postives = 65/81 (80.25%), Query Frame = 3

Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81

The following BLAST results are available for this feature:

BLAST of CK939686 vs. ExPASy Swiss-Prot

BLAST of CK939686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173


Match Name	E-value	Identity	Description
ATPH_EUCGG	2.808e-25	80.25	ATP synthase subunit c, chloroplastic OS=Eucalyptu...	[more]
ATPH_DRIGR	2.808e-25	80.25	ATP synthase subunit c, chloroplastic OS=Drimys gr...	[more]
ATPH_DIOEL	2.808e-25	80.25	ATP synthase subunit c, chloroplastic OS=Dioscorea...	[more]
ATPH_DAUCA	2.808e-25	80.25	ATP synthase subunit c, chloroplastic OS=Daucus ca...	[more]
ATPH_CUSRE	2.808e-25	80.25	ATP synthase subunit C, plastid OS=Cuscuta reflexa...	[more]
ATPH_CUSEX	2.808e-25	80.25	ATP synthase subunit C, plastid OS=Cuscuta exaltat...	[more]
ATPH_CUCSA	2.808e-25	80.25	ATP synthase subunit c, chloroplastic OS=Cucumis s...	[more]
ATPH_COFAR	2.808e-25	80.25	ATP synthase subunit c, chloroplastic OS=Coffea ar...	[more]
ATPH_CITSI	2.808e-25	80.25	ATP synthase subunit c, chloroplastic OS=Citrus si...	[more]
ATPH_CHLSC	2.808e-25	80.25	ATP synthase subunit c, chloroplastic OS=Chloranth...	[more]

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Properties


Property Name	Value
Genbank description	CGF1004747_A06 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIIF_A06 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK939686 ID=CK939686; Name=CK939686; organism=Citrus sinensis; type=EST; length=624bp
GGGATTGTATCATTAACGATTTCTTTAGTTTTTCTTTATTTTAGTGCGAG
GGACTTATCATGAATCCACTGATTTCTGCCGCTTCCGTTATTGCTGCTGG
GTTGGCTGTTGGGCTTGCTTCTATTGGACCTGGAGTTGGTCAAGGTACTG
CTGCGGGCCAGGCAGTAGAAGGGATCGCGAGACAGCCCGAGGCAGAGGGA
AAAATACGAGGTACTTTATTGCTTAGTCTGGCTTTTATGGAAGCTTTAAC
AATTTATGGGCTGGTTGTAGCATTAGCACTTTTATTTGCGAATCCTTTTG
TTTAATCCTAGAAATAGGAAGGGCAATTTACTTATTTTTTTTCTCTTATT
TATTATATCCGTGTTTCTGGCTTTTTTGAATTCTATCAAGATTTAACTCC
TCCAATTGGAAGGACTGATTTGAGGATGGGGAATTAGGATAGGCATACCA
GTTCGCCTTTTTTCTTTCCCTTTCTTAGTCTAAAGGAAACCCTCTTTTTA
AGTGATGCTGCAACAAACGAGGGGTTTTGCAATGGACAGGAGTCCCGGCC
CCTAATACTAATAAGTATCCCTCTTATCGGGAATCCCCAATTGCCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA