CK939686

Overview
NameCK939686
Unique NameCK939686
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_LOTJA (ATP synthase subunit c, chloroplastic OS=Lotus japonicus GN=atpH PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.790e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNP+ISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPIISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_GNEPA (ATP synthase subunit c, chloroplastic OS=Gnetum parvifolium GN=atpH PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.790e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNP+ISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPIISAASVIAAGLAVGLASIGPGVGQGTAAGQALEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_WHEAT (ATP synthase subunit c, chloroplastic OS=Triticum aestivum GN=atpH PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.256e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_STAPU (ATP synthase subunit c, chloroplastic OS=Staurastrum punctulatum GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.256e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNP+ISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPVISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_SPIOL (ATP synthase subunit c, chloroplastic OS=Spinacia oleracea GN=atpH PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.256e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_SORBI (ATP synthase subunit c, chloroplastic OS=Sorghum bicolor GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.256e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_SOLBU (ATP synthase subunit c, chloroplastic OS=Solanum bulbocastanum GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.256e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_SACOF (ATP synthase subunit c, chloroplastic OS=Saccharum officinarum GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.256e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_SACHY (ATP synthase subunit c, chloroplastic OS=Saccharum hybrid GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.256e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_ORYSJ (ATP synthase subunit c, chloroplastic OS=Oryza sativa subsp. japonica GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.256e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3 
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
The following BLAST results are available for this feature:
BLAST of CK939686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
ATPH_LOTJA4.790e-2579.01ATP synthase subunit c, chloroplastic OS=Lotus jap... [more]
ATPH_GNEPA4.790e-2579.01ATP synthase subunit c, chloroplastic OS=Gnetum pa... [more]
ATPH_WHEAT6.256e-2579.01ATP synthase subunit c, chloroplastic OS=Triticum ... [more]
ATPH_STAPU6.256e-2579.01ATP synthase subunit c, chloroplastic OS=Staurastr... [more]
ATPH_SPIOL6.256e-2579.01ATP synthase subunit c, chloroplastic OS=Spinacia ... [more]
ATPH_SORBI6.256e-2579.01ATP synthase subunit c, chloroplastic OS=Sorghum b... [more]
ATPH_SOLBU6.256e-2579.01ATP synthase subunit c, chloroplastic OS=Solanum b... [more]
ATPH_SACOF6.256e-2579.01ATP synthase subunit c, chloroplastic OS=Saccharum... [more]
ATPH_SACHY6.256e-2579.01ATP synthase subunit c, chloroplastic OS=Saccharum... [more]
ATPH_ORYSJ6.256e-2579.01ATP synthase subunit c, chloroplastic OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004747_A06 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIIF_A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939686 ID=CK939686; Name=CK939686; organism=Citrus sinensis; type=EST; length=624bp
GGGATTGTATCATTAACGATTTCTTTAGTTTTTCTTTATTTTAGTGCGAG
GGACTTATCATGAATCCACTGATTTCTGCCGCTTCCGTTATTGCTGCTGG
GTTGGCTGTTGGGCTTGCTTCTATTGGACCTGGAGTTGGTCAAGGTACTG
CTGCGGGCCAGGCAGTAGAAGGGATCGCGAGACAGCCCGAGGCAGAGGGA
AAAATACGAGGTACTTTATTGCTTAGTCTGGCTTTTATGGAAGCTTTAAC
AATTTATGGGCTGGTTGTAGCATTAGCACTTTTATTTGCGAATCCTTTTG
TTTAATCCTAGAAATAGGAAGGGCAATTTACTTATTTTTTTTCTCTTATT
TATTATATCCGTGTTTCTGGCTTTTTTGAATTCTATCAAGATTTAACTCC
TCCAATTGGAAGGACTGATTTGAGGATGGGGAATTAGGATAGGCATACCA
GTTCGCCTTTTTTCTTTCCCTTTCTTAGTCTAAAGGAAACCCTCTTTTTA
AGTGATGCTGCAACAAACGAGGGGTTTTGCAATGGACAGGAGTCCCGGCC
CCTAATACTAATAAGTATCCCTCTTATCGGGAATCCCCAATTGCCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
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