CK939686

Overview
NameCK939686
Unique NameCK939686
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_AGRST (ATP synthase subunit c, chloroplastic OS=Agrostis stolonifera GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.256e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81          
BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_GOSBA (ATP synthase subunit c, chloroplastic OS=Gossypium barbadense GN=atpH PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.170e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEAL+IYGLVVALALLFANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALSIYGLVVALALLFANPFV 81          
BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_IPOPU (ATP synthase subunit c, chloroplastic OS=Ipomoea purpurea GN=atpH PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.067e-24
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 3
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            M+PLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MDPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81          
BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_CYCTA (ATP synthase subunit c, chloroplastic OS=Cycas taitungensis GN=atpH PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.067e-24
Identity = 64/81 (79.01%), Postives = 64/81 (79.01%), Query Frame = 3
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLI AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIPAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81          
BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_ANGEV (ATP synthase subunit c, chloroplastic OS=Angiopteris evecta GN=atpH PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.394e-24
Identity = 64/81 (79.01%), Postives = 64/81 (79.01%), Query Frame = 3
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALAL FANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALSFANPFV 81          
BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_HUPLU (ATP synthase subunit c, chloroplastic OS=Huperzia lucidula GN=atpH PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.820e-24
Identity = 64/81 (79.01%), Postives = 64/81 (79.01%), Query Frame = 3
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALAL FANPFV
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALPFANPFV 81          
BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_CUSOB (ATP synthase subunit C, plastid OS=Cuscuta obtusiflora GN=atpE PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.820e-24
Identity = 62/81 (76.54%), Postives = 64/81 (79.01%), Query Frame = 3
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNP+ISAASVIAAG AVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPF+
Sbjct:    1 MNPIISAASVIAAGFAVGLASIGPGIGQGTAAGRAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFI 81          
BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_CUSGR (ATP synthase subunit C, plastid OS=Cuscuta gronovii GN=atpE PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.820e-24
Identity = 62/81 (76.54%), Postives = 64/81 (79.01%), Query Frame = 3
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNP+ISAASVIAAG AVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPF+
Sbjct:    1 MNPIISAASVIAAGFAVGLASIGPGIGQGTAAGRAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFI 81          
BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_CHLAT (ATP synthase subunit c, chloroplastic OS=Chlorokybus atmophyticus GN=atpH PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.820e-24
Identity = 63/81 (77.78%), Postives = 65/81 (80.25%), Query Frame = 3
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            M+PLISAASV+AAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MSPLISAASVLAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81          
BLAST of CK939686 vs. ExPASy Swiss-Prot
Match: ATPH_ATRBE (ATP synthase subunit c, chloroplastic OS=Atropa belladonna GN=atpH PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.820e-24
Identity = 63/81 (77.78%), Postives = 64/81 (79.01%), Query Frame = 3
Query:   60 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 302
            MNPL+ AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLVFAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81          
The following BLAST results are available for this feature:
BLAST of CK939686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
ATPH_AGRST6.256e-2579.01ATP synthase subunit c, chloroplastic OS=Agrostis ... [more]
ATPH_GOSBA8.170e-2579.01ATP synthase subunit c, chloroplastic OS=Gossypium... [more]
ATPH_IPOPU1.067e-2479.01ATP synthase subunit c, chloroplastic OS=Ipomoea p... [more]
ATPH_CYCTA1.067e-2479.01ATP synthase subunit c, chloroplastic OS=Cycas tai... [more]
ATPH_ANGEV1.394e-2479.01ATP synthase subunit c, chloroplastic OS=Angiopter... [more]
ATPH_HUPLU1.820e-2479.01ATP synthase subunit c, chloroplastic OS=Huperzia ... [more]
ATPH_CUSOB1.820e-2476.54ATP synthase subunit C, plastid OS=Cuscuta obtusif... [more]
ATPH_CUSGR1.820e-2476.54ATP synthase subunit C, plastid OS=Cuscuta gronovi... [more]
ATPH_CHLAT1.820e-2477.78ATP synthase subunit c, chloroplastic OS=Chlorokyb... [more]
ATPH_ATRBE1.820e-2477.78ATP synthase subunit c, chloroplastic OS=Atropa be... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004747_A06 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIIF_A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939686 ID=CK939686; Name=CK939686; organism=Citrus sinensis; type=EST; length=624bp
GGGATTGTATCATTAACGATTTCTTTAGTTTTTCTTTATTTTAGTGCGAG
GGACTTATCATGAATCCACTGATTTCTGCCGCTTCCGTTATTGCTGCTGG
GTTGGCTGTTGGGCTTGCTTCTATTGGACCTGGAGTTGGTCAAGGTACTG
CTGCGGGCCAGGCAGTAGAAGGGATCGCGAGACAGCCCGAGGCAGAGGGA
AAAATACGAGGTACTTTATTGCTTAGTCTGGCTTTTATGGAAGCTTTAAC
AATTTATGGGCTGGTTGTAGCATTAGCACTTTTATTTGCGAATCCTTTTG
TTTAATCCTAGAAATAGGAAGGGCAATTTACTTATTTTTTTTCTCTTATT
TATTATATCCGTGTTTCTGGCTTTTTTGAATTCTATCAAGATTTAACTCC
TCCAATTGGAAGGACTGATTTGAGGATGGGGAATTAGGATAGGCATACCA
GTTCGCCTTTTTTCTTTCCCTTTCTTAGTCTAAAGGAAACCCTCTTTTTA
AGTGATGCTGCAACAAACGAGGGGTTTTGCAATGGACAGGAGTCCCGGCC
CCTAATACTAATAAGTATCCCTCTTATCGGGAATCCCCAATTGCCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
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