CK939684

Overview
NameCK939684
Unique NameCK939684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length287
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_NICSY (30S ribosomal protein S19, chloroplastic OS=Nicotiana sylvestris GN=rps19 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.636e-34
Identity = 66/75 (88.00%), Postives = 71/75 (94.67%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KIDKLNTKAE   I+TWSRASTIIPTM+GHTIAIHNG+EHLPIYITD MVGHKLGEFAPT+NFRGHAK+DNRSRR
Sbjct:   18 KIDKLNTKAEKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDSMVGHKLGEFAPTLNFRGHAKSDNRSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_ATRBE (30S ribosomal protein S19, chloroplastic OS=Atropa belladonna GN=rps19 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.636e-34
Identity = 66/75 (88.00%), Postives = 71/75 (94.67%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KIDKLNTKAE   I+TWSRASTIIPTM+GHTIAIHNG+EHLPIYITD MVGHKLGEFAPT+NFRGHAK+DNRSRR
Sbjct:   18 KIDKLNTKAEKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDSMVGHKLGEFAPTLNFRGHAKSDNRSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_AETGR (30S ribosomal protein S19, chloroplastic OS=Aethionema grandiflora GN=rps19 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.636e-34
Identity = 68/75 (90.67%), Postives = 70/75 (93.33%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+KLNTKAE   IITWSRASTIIPTM+GHTIAIHNGREHLPIYI D MVGHKLGEFAPTINFRGHAKNDNRSRR
Sbjct:   18 KIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPIYIIDLMVGHKLGEFAPTINFRGHAKNDNRSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_MORIN (30S ribosomal protein S19, chloroplastic OS=Morus indica GN=rps19 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.749e-34
Identity = 65/75 (86.67%), Postives = 71/75 (94.67%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+ LNTKAE   I+TWSRASTIIPTM+GHTIA+HNG+EHLPIYITDRMVGHKLGEFAPT+NFRGHAKNDNRSRR
Sbjct:   18 KINMLNTKAEKEIIVTWSRASTIIPTMIGHTIAVHNGKEHLPIYITDRMVGHKLGEFAPTLNFRGHAKNDNRSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_AETCO (30S ribosomal protein S19, chloroplastic OS=Aethionema cordifolium GN=rps19 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.749e-34
Identity = 67/75 (89.33%), Postives = 70/75 (93.33%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+KLNTKAE   IITWSRASTIIPTM+GHTIAIHNGREHLP+YI D MVGHKLGEFAPTINFRGHAKNDNRSRR
Sbjct:   18 KIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPVYIIDLMVGHKLGEFAPTINFRGHAKNDNRSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_MANES (30S ribosomal protein S19, chloroplastic OS=Manihot esculenta GN=rps19 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.203e-34
Identity = 65/75 (86.67%), Postives = 71/75 (94.67%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+KLN KAE   I+TWSRASTIIPTM+GHTIAIHNG+EHLPIYITDRMVGHKLGEFAPT+NFRGHAKNDN+SRR
Sbjct:   18 KINKLNNKAEKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFAPTLNFRGHAKNDNKSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_LACSA (30S ribosomal protein S19, chloroplastic OS=Lactuca sativa GN=rps19 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.101e-34
Identity = 67/75 (89.33%), Postives = 71/75 (94.67%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+KLNTKAE   IITWSRASTIIP MVGHTIAIHNG+EHLPIYITDRMVGHKLGEFAPT+NFRGHAK+DNRSRR
Sbjct:   18 KINKLNTKAEKEIIITWSRASTIIPIMVGHTIAIHNGKEHLPIYITDRMVGHKLGEFAPTLNFRGHAKSDNRSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_OLIPU (30S ribosomal protein S19, chloroplastic OS=Olimarabidopsis pumila GN=rps19 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.058e-33
Identity = 66/75 (88.00%), Postives = 70/75 (93.33%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+KLNTKAE   IITWSRASTIIPTM+GHTIAIHNGREHLP+YI D MVGHKLGEF+PTINFRGHAKNDNRSRR
Sbjct:   18 KIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPVYIIDLMVGHKLGEFSPTINFRGHAKNDNRSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_NICTO (30S ribosomal protein S19, chloroplastic OS=Nicotiana tomentosiformis GN=rps19 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.058e-33
Identity = 65/75 (86.67%), Postives = 71/75 (94.67%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+KLNTKAE   I+TWSRASTIIPTM+GHTIAIHNG+EHLPIYITD MVGHKLGEFAPT+NFRGHAK+DNRSRR
Sbjct:   18 KIEKLNTKAEKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDSMVGHKLGEFAPTLNFRGHAKSDNRSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_NASOF (30S ribosomal protein S19, chloroplastic OS=Nasturtium officinale GN=rps19 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.058e-33
Identity = 66/75 (88.00%), Postives = 70/75 (93.33%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+KLNTKAE   IITWSRASTIIPTM+GHTIAIHNGREHLP+YI D MVGHKLGEF+PTINFRGHAKNDNRSRR
Sbjct:   18 KIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPVYIIDLMVGHKLGEFSPTINFRGHAKNDNRSRR 92          
The following BLAST results are available for this feature:
BLAST of CK939684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR19_NICSY3.636e-3488.0030S ribosomal protein S19, chloroplastic OS=Nicoti... [more]
RR19_ATRBE3.636e-3488.0030S ribosomal protein S19, chloroplastic OS=Atropa... [more]
RR19_AETGR3.636e-3490.6730S ribosomal protein S19, chloroplastic OS=Aethio... [more]
RR19_MORIN4.749e-3486.6730S ribosomal protein S19, chloroplastic OS=Morus ... [more]
RR19_AETCO4.749e-3489.3330S ribosomal protein S19, chloroplastic OS=Aethio... [more]
RR19_MANES6.203e-3486.6730S ribosomal protein S19, chloroplastic OS=Maniho... [more]
RR19_LACSA8.101e-3489.3330S ribosomal protein S19, chloroplastic OS=Lactuc... [more]
RR19_OLIPU1.058e-3388.0030S ribosomal protein S19, chloroplastic OS=Olimar... [more]
RR19_NICTO1.058e-3386.6730S ribosomal protein S19, chloroplastic OS=Nicoti... [more]
RR19_NASOF1.058e-3388.0030S ribosomal protein S19, chloroplastic OS=Nastur... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004747_A03 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIIF_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939684 ID=CK939684; Name=CK939684; organism=Citrus sinensis; type=EST; length=287bp
GGGGGAAAAATTGATAAGCTTAATACAAAAGCGGAANNNNANNNNATAAT
AACTTGGTCCCGGGCATCTACCATTATACCCACAATGGTCGGCCATACTA
TTGCTATCCATAATGGAAGGGAGCATTTGCCTATTTATATAACAGATCGT
ATGGTAGGACATAAATTGGGAGAATTTGCGCCCACTATCAATTTCCGTGG
ACATGCAAAAAATGATAATAGATCCCGTCGTTAATAAAGTGAATATAGAT
TCATTGGTGAGAGGTGAACCTTATGATAAGGATAATA
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