CK939684

Overview
NameCK939684
Unique NameCK939684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length287
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_LEPVR (30S ribosomal protein S19, chloroplastic OS=Lepidium virginicum GN=rps19 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.058e-33
Identity = 66/75 (88.00%), Postives = 70/75 (93.33%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+KLNTKAE   IITWSRASTIIPTM+GHTIAIHNGREHLP+YI D MVGHKLGEF+PTINFRGHAKNDNRSRR
Sbjct:   18 KIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPVYIIDLMVGHKLGEFSPTINFRGHAKNDNRSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_CRUWA (30S ribosomal protein S19, chloroplastic OS=Crucihimalaya wallichii GN=rps19 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.058e-33
Identity = 66/75 (88.00%), Postives = 70/75 (93.33%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+KLNTKAE   IITWSRASTIIPTM+GHTIAIHNGREHLP+YI D MVGHKLGEF+PTINFRGHAKNDNRSRR
Sbjct:   18 KIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPVYIIDLMVGHKLGEFSPTINFRGHAKNDNRSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_CAPBU (30S ribosomal protein S19, chloroplastic OS=Capsella bursa-pastoris GN=rps19 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.058e-33
Identity = 66/75 (88.00%), Postives = 70/75 (93.33%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+KLNTKAE   IITWSRASTIIPTM+GHTIAIHNGREHLP+YI D MVGHKLGEF+PTINFRGHAKNDNRSRR
Sbjct:   18 KIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPVYIIDLMVGHKLGEFSPTINFRGHAKNDNRSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_BARVE (30S ribosomal protein S19, chloroplastic OS=Barbarea verna GN=rps19 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.058e-33
Identity = 66/75 (88.00%), Postives = 70/75 (93.33%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+KLNTKAE   IITWSRASTIIPTM+GHTIAIHNGREHLP+YI D MVGHKLGEF+PTINFRGHAKNDNRSRR
Sbjct:   18 KIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPVYIIDLMVGHKLGEFSPTINFRGHAKNDNRSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_ARATH (30S ribosomal protein S19, chloroplastic OS=Arabidopsis thaliana GN=rps19 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.058e-33
Identity = 66/75 (88.00%), Postives = 70/75 (93.33%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+KLNTKAE   IITWSRASTIIPTM+GHTIAIHNGREHLP+YI D MVGHKLGEF+PTINFRGHAKNDNRSRR
Sbjct:   18 KIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPVYIIDLMVGHKLGEFSPTINFRGHAKNDNRSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_ARAHI (30S ribosomal protein S19, chloroplastic OS=Arabis hirsuta GN=rps19 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.058e-33
Identity = 66/75 (88.00%), Postives = 70/75 (93.33%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+KLNTKAE   IITWSRASTIIPTM+GHTIAIHNGREHLP+YI D MVGHKLGEF+PTINFRGHAKNDNRSRR
Sbjct:   18 KIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPVYIIDLMVGHKLGEFSPTINFRGHAKNDNRSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_NICBI (30S ribosomal protein S19, chloroplastic OS=Nicotiana bigelovii GN=rps19 PE=3 SV=5)

HSP 1 Score: 140.198 bits (352), Expect = 3.078e-33
Identity = 64/75 (85.33%), Postives = 70/75 (93.33%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KIDKLNTKAE   I+TWSRASTIIPT +GHTIAIHNG+EHLPIYIT+ MVGHKLGEFAPT+NFRGHAK+DNRSRR
Sbjct:   18 KIDKLNTKAEKEIIVTWSRASTIIPTXIGHTIAIHNGKEHLPIYITBSMVGHKLGEFAPTLNFRGHAKSDNRSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_HELAN (30S ribosomal protein S19, chloroplastic OS=Helianthus annuus GN=rps19 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.078e-33
Identity = 66/75 (88.00%), Postives = 70/75 (93.33%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+KLNTK E   IITWSRASTIIP MVGHTIAIHNG+EHLPIYITDRMVGHKLGEFAPT+NFRGHAK+DNRSRR
Sbjct:   18 KINKLNTKEEKEIIITWSRASTIIPIMVGHTIAIHNGKEHLPIYITDRMVGHKLGEFAPTLNFRGHAKSDNRSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_GUIAB (30S ribosomal protein S19, chloroplastic OS=Guizotia abyssinica GN=rps19 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.078e-33
Identity = 66/75 (88.00%), Postives = 70/75 (93.33%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+KLNTK E   IITWSRASTIIP MVGHTIAIHNG+EHLPIYITDRMVGHKLGEFAPT+NFRGHAK+DNRSRR
Sbjct:   18 KINKLNTKEEKEIIITWSRASTIIPIMVGHTIAIHNGKEHLPIYITDRMVGHKLGEFAPTLNFRGHAKSDNRSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_ILLOL (30S ribosomal protein S19, chloroplastic OS=Illicium oligandrum GN=rps19 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.251e-33
Identity = 63/76 (82.89%), Postives = 70/76 (92.11%), Query Frame = 1
Query:    4 GKIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            GKI+KLN + E   I+TWSRASTIIPTM+GHTIAIHNG+EHLPIYITDRMVGHKLGEFAPT+ FRGHA+NDNRSRR
Sbjct:   17 GKIEKLNMREEKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFAPTLTFRGHARNDNRSRR 92          
The following BLAST results are available for this feature:
BLAST of CK939684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR19_LEPVR1.058e-3388.0030S ribosomal protein S19, chloroplastic OS=Lepidi... [more]
RR19_CRUWA1.058e-3388.0030S ribosomal protein S19, chloroplastic OS=Crucih... [more]
RR19_CAPBU1.058e-3388.0030S ribosomal protein S19, chloroplastic OS=Capsel... [more]
RR19_BARVE1.058e-3388.0030S ribosomal protein S19, chloroplastic OS=Barbar... [more]
RR19_ARATH1.058e-3388.0030S ribosomal protein S19, chloroplastic OS=Arabid... [more]
RR19_ARAHI1.058e-3388.0030S ribosomal protein S19, chloroplastic OS=Arabis... [more]
RR19_NICBI3.078e-3385.3330S ribosomal protein S19, chloroplastic OS=Nicoti... [more]
RR19_HELAN3.078e-3388.0030S ribosomal protein S19, chloroplastic OS=Helian... [more]
RR19_GUIAB3.078e-3388.0030S ribosomal protein S19, chloroplastic OS=Guizot... [more]
RR19_ILLOL5.251e-3382.8930S ribosomal protein S19, chloroplastic OS=Illici... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004747_A03 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIIF_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939684 ID=CK939684; Name=CK939684; organism=Citrus sinensis; type=EST; length=287bp
GGGGGAAAAATTGATAAGCTTAATACAAAAGCGGAANNNNANNNNATAAT
AACTTGGTCCCGGGCATCTACCATTATACCCACAATGGTCGGCCATACTA
TTGCTATCCATAATGGAAGGGAGCATTTGCCTATTTATATAACAGATCGT
ATGGTAGGACATAAATTGGGAGAATTTGCGCCCACTATCAATTTCCGTGG
ACATGCAAAAAATGATAATAGATCCCGTCGTTAATAAAGTGAATATAGAT
TCATTGGTGAGAGGTGAACCTTATGATAAGGATAATA
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