CK939684

Overview
NameCK939684
Unique NameCK939684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length287
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_DRANE (30S ribosomal protein S19, chloroplastic OS=Draba nemorosa GN=rps19 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.251e-33
Identity = 65/75 (86.67%), Postives = 69/75 (92.00%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+KLNTKAE   IITWSRASTIIPTM+GHTIAIHNGREHLP+YI D MVGHKLGEF+PTINFRGHAKND RSRR
Sbjct:   18 KIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPVYIIDLMVGHKLGEFSPTINFRGHAKNDTRSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_LOBMA (30S ribosomal protein S19, chloroplastic OS=Lobularia maritima GN=rps19 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 6.858e-33
Identity = 65/75 (86.67%), Postives = 69/75 (92.00%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+KLNTKAE   I TWSRASTIIPTM+GHTIAIHNGREHLP+YI D MVGHKLGEF+PTINFRGHAKNDNRSRR
Sbjct:   18 KIEKLNTKAEKEIIRTWSRASTIIPTMIGHTIAIHNGREHLPVYIIDLMVGHKLGEFSPTINFRGHAKNDNRSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_CUCSA (30S ribosomal protein S19, chloroplastic OS=Cucumis sativus GN=rps19 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 8.957e-33
Identity = 62/75 (82.67%), Postives = 69/75 (92.00%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+KLNTK E   I+TWSRASTIIPTM+GHTIA+HNG++HLP+YITDRMVGHKLGEFAPT NFRGH KNDNRSRR
Sbjct:   18 KINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAVHNGKDHLPVYITDRMVGHKLGEFAPTRNFRGHVKNDNRSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_LOTJA (30S ribosomal protein S19, chloroplastic OS=Lotus japonicus GN=rps19 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.528e-32
Identity = 62/75 (82.67%), Postives = 69/75 (92.00%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+ LNTK+E   IITWSR STIIP M+GHTIAIHNG+EHLPIY+TDRMVGHKLGEF+PT+NFRGHAKNDNRSRR
Sbjct:   18 KINNLNTKSEKEIIITWSRTSTIIPAMIGHTIAIHNGKEHLPIYVTDRMVGHKLGEFSPTLNFRGHAKNDNRSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_LIRTU (30S ribosomal protein S19, chloroplastic OS=Liriodendron tulipifera GN=rps19 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.995e-32
Identity = 62/76 (81.58%), Postives = 70/76 (92.11%), Query Frame = 1
Query:    4 GKIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            GKI+KLN + E   IITWSRASTIIPTM+GHTIAIHNG++HLPIYITDRMVGHKLGEFAPT+ F+GHA+NDNRSRR
Sbjct:   17 GKIEKLNMREEKEIIITWSRASTIIPTMIGHTIAIHNGKDHLPIYITDRMVGHKLGEFAPTLTFKGHARNDNRSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_ACOCL (30S ribosomal protein S19, chloroplastic OS=Acorus calamus GN=rps19 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.606e-32
Identity = 62/75 (82.67%), Postives = 69/75 (92.00%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+KLN K E   I+TWSRASTIIPTM+GHTIAIHNG+EHLPIYITDRMVGHKLGEFAPT+ FRGHA+NDN+SRR
Sbjct:   18 KIEKLNMKEEKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFAPTLTFRGHARNDNKSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_CHLSC (30S ribosomal protein S19, chloroplastic OS=Chloranthus spicatus GN=rps19 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.404e-32
Identity = 61/75 (81.33%), Postives = 69/75 (92.00%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            K++KLN + E   I+TWSR+STIIPTM+GHTIAIHNGREHLPIYITDRMVGHKLGEFAPT+ FRGHA+NDNRSRR
Sbjct:   18 KVEKLNMREEKKIIVTWSRSSTIIPTMIGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTLTFRGHARNDNRSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_CICAR (30S ribosomal protein S19, chloroplastic OS=Cicer arietinum GN=rps19 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.445e-32
Identity = 63/75 (84.00%), Postives = 69/75 (92.00%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+KLNTK E   IITWSRASTIIPTM+GHTIAIHNGREHLPIYITDRMVGHKLGEF+PT+ FRG+AKND +SRR
Sbjct:   18 KINKLNTKGEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPIYITDRMVGHKLGEFSPTLTFRGYAKNDTKSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_PIPCE (30S ribosomal protein S19, chloroplastic OS=Piper cenocladum GN=rps19 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.806e-32
Identity = 62/75 (82.67%), Postives = 68/75 (90.67%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+KLN K     I+TWSRASTIIPTM+GHTIAIHNG+EHLPIYITDRMVGHKLGEFAPT+ FRGHA+NDNRSRR
Sbjct:   18 KIEKLNMKGGKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFAPTLTFRGHARNDNRSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_CERDE (30S ribosomal protein S19, chloroplastic OS=Ceratophyllum demersum GN=rps19 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.293e-31
Identity = 59/75 (78.67%), Postives = 69/75 (92.00%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            K++KLN + E   I+TWSRASTIIPTMVGHTIA+HNG+EHLP++ITDRMVGHKLGEFAPT+ FRGHA+NDNRSRR
Sbjct:   18 KVEKLNIRKEKEIIVTWSRASTIIPTMVGHTIAVHNGKEHLPVFITDRMVGHKLGEFAPTLTFRGHARNDNRSRR 92          
The following BLAST results are available for this feature:
BLAST of CK939684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR19_DRANE5.251e-3386.6730S ribosomal protein S19, chloroplastic OS=Draba ... [more]
RR19_LOBMA6.858e-3386.6730S ribosomal protein S19, chloroplastic OS=Lobula... [more]
RR19_CUCSA8.957e-3382.6730S ribosomal protein S19, chloroplastic OS=Cucumi... [more]
RR19_LOTJA1.528e-3282.6730S ribosomal protein S19, chloroplastic OS=Lotus ... [more]
RR19_LIRTU1.995e-3281.5830S ribosomal protein S19, chloroplastic OS=Liriod... [more]
RR19_ACOCL2.606e-3282.6730S ribosomal protein S19, chloroplastic OS=Acorus... [more]
RR19_CHLSC3.404e-3281.3330S ribosomal protein S19, chloroplastic OS=Chlora... [more]
RR19_CICAR4.445e-3284.0030S ribosomal protein S19, chloroplastic OS=Cicer ... [more]
RR19_PIPCE5.806e-3282.6730S ribosomal protein S19, chloroplastic OS=Piper ... [more]
RR19_CERDE1.293e-3178.6730S ribosomal protein S19, chloroplastic OS=Cerato... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004747_A03 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIIF_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939684 ID=CK939684; Name=CK939684; organism=Citrus sinensis; type=EST; length=287bp
GGGGGAAAAATTGATAAGCTTAATACAAAAGCGGAANNNNANNNNATAAT
AACTTGGTCCCGGGCATCTACCATTATACCCACAATGGTCGGCCATACTA
TTGCTATCCATAATGGAAGGGAGCATTTGCCTATTTATATAACAGATCGT
ATGGTAGGACATAAATTGGGAGAATTTGCGCCCACTATCAATTTCCGTGG
ACATGCAAAAAATGATAATAGATCCCGTCGTTAATAAAGTGAATATAGAT
TCATTGGTGAGAGGTGAACCTTATGATAAGGATAATA
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