CK939684

Overview
NameCK939684
Unique NameCK939684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length287
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RS19_AERHH (30S ribosomal protein S19 OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=rpsS PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.636e-19
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = 1 
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            K++K     +   + TWSR S IIP M+G TIA+HNGR+H+P+++T+ M+GHKLGEFAPT  +RGHA +    +R
Sbjct:   18 KVEKAVESGDKKPVKTWSRRSMIIPNMIGLTIAVHNGRQHVPVFVTEEMIGHKLGEFAPTRTYRGHAADKKAKKR 92
[Close]
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RS19_STAS1 (30S ribosomal protein S19 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=rpsS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.361e-19
Identity = 38/75 (50.67%), Postives = 56/75 (74.67%), Query Frame = 1 
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            K++  +   +   I TWSR STI P  +GHT A+++GR+H+P+++T+ MVGHKLGEFAPT  F+GHA +D ++RR
Sbjct:   18 KVEAQSGSEKKQVIKTWSRRSTIFPDFIGHTFAVYDGRKHVPVFVTEDMVGHKLGEFAPTRTFKGHAADDKKTRR 92
[Close]
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RS19_STAAW (30S ribosomal protein S19 OS=Staphylococcus aureus (strain MW2) GN=rpsS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.361e-19
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = 1 
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            K++      +   I TWSR STI P  +GHT A+++GR+H+P+Y+T+ MVGHKLGEFAPT  F+GH  +D ++RR
Sbjct:   18 KVEAQEGSEKKQVIKTWSRRSTIFPNFIGHTFAVYDGRKHVPVYVTEDMVGHKLGEFAPTRTFKGHVADDKKTRR 92
[Close]
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RS19_STAAS (30S ribosomal protein S19 OS=Staphylococcus aureus (strain MSSA476) GN=rpsS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.361e-19
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = 1 
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            K++      +   I TWSR STI P  +GHT A+++GR+H+P+Y+T+ MVGHKLGEFAPT  F+GH  +D ++RR
Sbjct:   18 KVEAQEGSEKKQVIKTWSRRSTIFPNFIGHTFAVYDGRKHVPVYVTEDMVGHKLGEFAPTRTFKGHVADDKKTRR 92
[Close]
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RS19_STAAR (30S ribosomal protein S19 OS=Staphylococcus aureus (strain MRSA252) GN=rpsS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.361e-19
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = 1 
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            K++      +   I TWSR STI P  +GHT A+++GR+H+P+Y+T+ MVGHKLGEFAPT  F+GH  +D ++RR
Sbjct:   18 KVEAQEGSEKKQVIKTWSRRSTIFPNFIGHTFAVYDGRKHVPVYVTEDMVGHKLGEFAPTRTFKGHVADDKKTRR 92
[Close]
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RS19_STAAN (30S ribosomal protein S19 OS=Staphylococcus aureus (strain N315) GN=rpsS PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.361e-19
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = 1 
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            K++      +   I TWSR STI P  +GHT A+++GR+H+P+Y+T+ MVGHKLGEFAPT  F+GH  +D ++RR
Sbjct:   18 KVEAQEGSEKKQVIKTWSRRSTIFPNFIGHTFAVYDGRKHVPVYVTEDMVGHKLGEFAPTRTFKGHVADDKKTRR 92
[Close]
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RS19_STAAM (30S ribosomal protein S19 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rpsS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.361e-19
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = 1 
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            K++      +   I TWSR STI P  +GHT A+++GR+H+P+Y+T+ MVGHKLGEFAPT  F+GH  +D ++RR
Sbjct:   18 KVEAQEGSEKKQVIKTWSRRSTIFPNFIGHTFAVYDGRKHVPVYVTEDMVGHKLGEFAPTRTFKGHVADDKKTRR 92
[Close]
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RS19_STAAE (30S ribosomal protein S19 OS=Staphylococcus aureus (strain Newman) GN=rpsS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.361e-19
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = 1 
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            K++      +   I TWSR STI P  +GHT A+++GR+H+P+Y+T+ MVGHKLGEFAPT  F+GH  +D ++RR
Sbjct:   18 KVEAQEGSEKKQVIKTWSRRSTIFPNFIGHTFAVYDGRKHVPVYVTEDMVGHKLGEFAPTRTFKGHVADDKKTRR 92
[Close]
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RS19_STAAC (30S ribosomal protein S19 OS=Staphylococcus aureus (strain COL) GN=rpsS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.361e-19
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = 1 
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            K++      +   I TWSR STI P  +GHT A+++GR+H+P+Y+T+ MVGHKLGEFAPT  F+GH  +D ++RR
Sbjct:   18 KVEAQEGSEKKQVIKTWSRRSTIFPNFIGHTFAVYDGRKHVPVYVTEDMVGHKLGEFAPTRTFKGHVADDKKTRR 92
[Close]
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RS19_STAAB (30S ribosomal protein S19 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=rpsS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.361e-19
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = 1 
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            K++      +   I TWSR STI P  +GHT A+++GR+H+P+Y+T+ MVGHKLGEFAPT  F+GH  +D ++RR
Sbjct:   18 KVEAQEGSEKKQVIKTWSRRSTIFPNFIGHTFAVYDGRKHVPVYVTEDMVGHKLGEFAPTRTFKGHVADDKKTRR 92
The following BLAST results are available for this feature:
BLAST of CK939684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS19_AERHH5.636e-1950.6730S ribosomal protein S19 OS=Aeromonas hydrophila ... [more]
RS19_STAS17.361e-1950.6730S ribosomal protein S19 OS=Staphylococcus saprop... [more]
RS19_STAAW7.361e-1950.6730S ribosomal protein S19 OS=Staphylococcus aureus... [more]
RS19_STAAS7.361e-1950.6730S ribosomal protein S19 OS=Staphylococcus aureus... [more]
RS19_STAAR7.361e-1950.6730S ribosomal protein S19 OS=Staphylococcus aureus... [more]
RS19_STAAN7.361e-1950.6730S ribosomal protein S19 OS=Staphylococcus aureus... [more]
RS19_STAAM7.361e-1950.6730S ribosomal protein S19 OS=Staphylococcus aureus... [more]
RS19_STAAE7.361e-1950.6730S ribosomal protein S19 OS=Staphylococcus aureus... [more]
RS19_STAAC7.361e-1950.6730S ribosomal protein S19 OS=Staphylococcus aureus... [more]
RS19_STAAB7.361e-1950.6730S ribosomal protein S19 OS=Staphylococcus aureus... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004747_A03 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIIF_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939684 ID=CK939684; Name=CK939684; organism=Citrus sinensis; type=EST; length=287bp
GGGGGAAAAATTGATAAGCTTAATACAAAAGCGGAANNNNANNNNATAAT
AACTTGGTCCCGGGCATCTACCATTATACCCACAATGGTCGGCCATACTA
TTGCTATCCATAATGGAAGGGAGCATTTGCCTATTTATATAACAGATCGT
ATGGTAGGACATAAATTGGGAGAATTTGCGCCCACTATCAATTTCCGTGG
ACATGCAAAAAATGATAATAGATCCCGTCGTTAATAAAGTGAATATAGAT
TCATTGGTGAGAGGTGAACCTTATGATAAGGATAATA
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