CK939684

Overview
NameCK939684
Unique NameCK939684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length287
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RS19_BLOPB (30S ribosomal protein S19 OS=Blochmannia pennsylvanicus (strain BPEN) GN=rpsS PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.640e-18
Identity = 39/67 (58.21%), Postives = 51/67 (76.12%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHA 207
            K++K     +   I TWSR STI P M+G T+A+HNGR+H+PI+I+D MVGHKLGEFAPT  +RGH+
Sbjct:   18 KVEKAIETGDKKPIRTWSRRSTIFPRMIGLTVAVHNGRQHIPIFISDEMVGHKLGEFAPTRTYRGHS 84          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RS19_BACTN (30S ribosomal protein S19 OS=Bacteroides thetaiotaomicron GN=rpsS PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.640e-18
Identity = 39/72 (54.17%), Postives = 51/72 (70.83%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNR 222
            +I  +N   +   + TW+RAS I P  VGHT+A+HNG + +P+Y+T+ MVGHKLGEFAPT  FRGHA N  R
Sbjct:   18 RIFAMNESGKKVVVKTWARASMISPDFVGHTVAVHNGNKFIPVYVTENMVGHKLGEFAPTRTFRGHAGNKKR 89          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RS19_PSYIN (30S ribosomal protein S19 OS=Psychromonas ingrahamii (strain 37) GN=rpsS PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.142e-18
Identity = 39/75 (52.00%), Postives = 52/75 (69.33%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            K++K     E   I TWSR S IIP M+G TIA+HNGR+H+P+++TD MVG KLGEFAPT  +RGH  +    ++
Sbjct:   18 KVEKAMESGEKKPIKTWSRRSMIIPDMIGLTIAVHNGRQHVPVFVTDEMVGQKLGEFAPTRTYRGHTSDKKTKKK 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RS19_PHOPR (30S ribosomal protein S19 OS=Photobacterium profundum GN=rpsS PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.142e-18
Identity = 37/75 (49.33%), Postives = 54/75 (72.00%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            K++K     +   + TWSR S IIP M+G TIA+HNGR+H+P+++++ M+GHKLGEFAPT  +RGHA +    +R
Sbjct:   18 KVEKAVESGDKKPVKTWSRRSMIIPQMIGLTIAVHNGRQHVPVFVSEEMIGHKLGEFAPTRTYRGHAADKKAKKR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RS19_LISW6 (30S ribosomal protein S19 OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=rpsS PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.142e-18
Identity = 39/75 (52.00%), Postives = 55/75 (73.33%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            K++      +   I TWSR STI PT VG TIA+++GR+H+P+Y+ + MVGHKLGEFAPT  +RGHA +D +++R
Sbjct:   18 KVEAAAESEKKQVIKTWSRRSTIFPTFVGQTIAVYDGRKHVPVYVQEDMVGHKLGEFAPTRTYRGHAGDDKKTKR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RS19_LISMO (30S ribosomal protein S19 OS=Listeria monocytogenes GN=rpsS PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.142e-18
Identity = 39/75 (52.00%), Postives = 55/75 (73.33%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            K++      +   I TWSR STI PT VG TIA+++GR+H+P+Y+ + MVGHKLGEFAPT  +RGHA +D +++R
Sbjct:   18 KVEAAAESEKKQVIKTWSRRSTIFPTFVGQTIAVYDGRKHVPVYVQEDMVGHKLGEFAPTRTYRGHAGDDKKTKR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RS19_LISMH (30S ribosomal protein S19 OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=rpsS PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.142e-18
Identity = 39/75 (52.00%), Postives = 55/75 (73.33%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            K++      +   I TWSR STI PT VG TIA+++GR+H+P+Y+ + MVGHKLGEFAPT  +RGHA +D +++R
Sbjct:   18 KVEAAAESEKKQVIKTWSRRSTIFPTFVGQTIAVYDGRKHVPVYVQEDMVGHKLGEFAPTRTYRGHAGDDKKTKR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RS19_LISMF (30S ribosomal protein S19 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rpsS PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.142e-18
Identity = 39/75 (52.00%), Postives = 55/75 (73.33%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            K++      +   I TWSR STI PT VG TIA+++GR+H+P+Y+ + MVGHKLGEFAPT  +RGHA +D +++R
Sbjct:   18 KVEAAAESEKKQVIKTWSRRSTIFPTFVGQTIAVYDGRKHVPVYVQEDMVGHKLGEFAPTRTYRGHAGDDKKTKR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RS19_LISMC (30S ribosomal protein S19 OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rpsS PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.142e-18
Identity = 39/75 (52.00%), Postives = 55/75 (73.33%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            K++      +   I TWSR STI PT VG TIA+++GR+H+P+Y+ + MVGHKLGEFAPT  +RGHA +D +++R
Sbjct:   18 KVEAAAESEKKQVIKTWSRRSTIFPTFVGQTIAVYDGRKHVPVYVQEDMVGHKLGEFAPTRTYRGHAGDDKKTKR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RS19_LISIN (30S ribosomal protein S19 OS=Listeria innocua GN=rpsS PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.142e-18
Identity = 39/75 (52.00%), Postives = 55/75 (73.33%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            K++      +   I TWSR STI PT VG TIA+++GR+H+P+Y+ + MVGHKLGEFAPT  +RGHA +D +++R
Sbjct:   18 KVEAAAESEKKQVIKTWSRRSTIFPTFVGQTIAVYDGRKHVPVYVQEDMVGHKLGEFAPTRTYRGHAGDDKKTKR 92          
The following BLAST results are available for this feature:
BLAST of CK939684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS19_BLOPB1.640e-1858.2130S ribosomal protein S19 OS=Blochmannia pennsylva... [more]
RS19_BACTN1.640e-1854.1730S ribosomal protein S19 OS=Bacteroides thetaiota... [more]
RS19_PSYIN2.142e-1852.0030S ribosomal protein S19 OS=Psychromonas ingraham... [more]
RS19_PHOPR2.142e-1849.3330S ribosomal protein S19 OS=Photobacterium profun... [more]
RS19_LISW62.142e-1852.0030S ribosomal protein S19 OS=Listeria welshimeri s... [more]
RS19_LISMO2.142e-1852.0030S ribosomal protein S19 OS=Listeria monocytogene... [more]
RS19_LISMH2.142e-1852.0030S ribosomal protein S19 OS=Listeria monocytogene... [more]
RS19_LISMF2.142e-1852.0030S ribosomal protein S19 OS=Listeria monocytogene... [more]
RS19_LISMC2.142e-1852.0030S ribosomal protein S19 OS=Listeria monocytogene... [more]
RS19_LISIN2.142e-1852.0030S ribosomal protein S19 OS=Listeria innocua GN=r... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004747_A03 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIIF_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939684 ID=CK939684; Name=CK939684; organism=Citrus sinensis; type=EST; length=287bp
GGGGGAAAAATTGATAAGCTTAATACAAAAGCGGAANNNNANNNNATAAT
AACTTGGTCCCGGGCATCTACCATTATACCCACAATGGTCGGCCATACTA
TTGCTATCCATAATGGAAGGGAGCATTTGCCTATTTATATAACAGATCGT
ATGGTAGGACATAAATTGGGAGAATTTGCGCCCACTATCAATTTCCGTGG
ACATGCAAAAAATGATAATAGATCCCGTCGTTAATAAAGTGAATATAGAT
TCATTGGTGAGAGGTGAACCTTATGATAAGGATAATA
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