CK939684

Overview
NameCK939684
Unique NameCK939684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length287
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RS19_COLP3 (30S ribosomal protein S19 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=rpsS PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.142e-18
Identity = 38/66 (57.58%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGH 204
            K++K         I TWSR S IIPTM+G TIA+HNGR+H+P+++T+ M+GHKLGEFAPT  +RGH
Sbjct:   18 KVEKAVESGNKKPIKTWSRRSMIIPTMIGLTIAVHNGRQHVPVFVTEEMIGHKLGEFAPTRTYRGH 83          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RS19_PROVI (30S ribosomal protein S19 OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=rpsS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.797e-18
Identity = 37/63 (58.73%), Postives = 49/63 (77.78%), Query Frame = 1
Query:   19 LNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHA 207
            +N++ E   + TW R+S I P  VGHTIA+HNG+ H+P+Y++D MVGHKLGEFAPT  +RGHA
Sbjct:   22 MNSRGEKKVLKTWCRSSMISPDFVGHTIAVHNGKTHVPVYVSDNMVGHKLGEFAPTRTYRGHA 84          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RS19_PHYAS (30S ribosomal protein S19 OS=Phytoplasma australiense GN=rpsS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.797e-18
Identity = 41/75 (54.67%), Postives = 51/75 (68.00%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+K         I TWSR+S I P  VGH IA++NGREH+PIYIT+ MVGHKLGEF  T  +RGH K D + ++
Sbjct:   18 KIEKQKNLKNKKVIQTWSRSSMITPVFVGHKIAVYNGREHIPIYITENMVGHKLGEFFSTRTYRGHNKKDKKGQK 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RS19_LACLS (30S ribosomal protein S19 OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=rpsS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.797e-18
Identity = 41/70 (58.57%), Postives = 54/70 (77.14%), Query Frame = 1
Query:   25 TKAEXXXII-TWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            T AE   +I TWSR STI P  VG TIA+++GR+H+P+Y+ + MVGHKLGEFAPT  +RGHA +D ++RR
Sbjct:   23 TNAERKSVIKTWSRRSTIFPNFVGLTIAVYDGRKHVPVYVQEDMVGHKLGEFAPTRTYRGHAADDKKTRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RS19_LACLM (30S ribosomal protein S19 OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=rpsS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.797e-18
Identity = 41/70 (58.57%), Postives = 54/70 (77.14%), Query Frame = 1
Query:   25 TKAEXXXII-TWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            T AE   +I TWSR STI P  VG TIA+++GR+H+P+Y+ + MVGHKLGEFAPT  +RGHA +D ++RR
Sbjct:   23 TNAERKSVIKTWSRRSTIFPNFVGLTIAVYDGRKHVPVYVQEDMVGHKLGEFAPTRTYRGHAADDKKTRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RS19_BLOFL (30S ribosomal protein S19 OS=Blochmannia floridanus GN=rpsS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.797e-18
Identity = 38/75 (50.67%), Postives = 55/75 (73.33%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            K++K+    +   I TWSR STI P M+G TI++HNG++H+P++I+D MVGHKLGEFAPT  +RGH+ +    +R
Sbjct:   18 KVEKVIKTGDKKPIRTWSRRSTIFPKMIGLTISVHNGKQHIPVFISDEMVGHKLGEFAPTRTYRGHSVDKKIKKR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RS19_BACV8 (30S ribosomal protein S19 OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=rpsS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.797e-18
Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNR 222
            K+  +N   +   + TW+RAS I P  VGHT+A+HNG + +P+Y+T+ MVGHKLGEFAPT  FRGHA N  +
Sbjct:   18 KVLAMNESGKKVVVKTWARASMISPDFVGHTVAVHNGNKFIPVYVTENMVGHKLGEFAPTRTFRGHAGNKKK 89          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RS19_BACSK (30S ribosomal protein S19 OS=Bacillus clausii (strain KSM-K16) GN=rpsS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.797e-18
Identity = 38/75 (50.67%), Postives = 56/75 (74.67%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            K++ LN   +   + TWSR STI P  +GHT A+++GR+H+P+Y+++ MVGHKLGEFAPT  ++GHA  D ++RR
Sbjct:   18 KVEALNATNDKKVVKTWSRRSTIFPDFIGHTFAVYDGRKHVPVYVSEDMVGHKLGEFAPTRTYKGHAA-DKKTRR 91          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RS19_THEM4 (30S ribosomal protein S19 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rpsS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.653e-18
Identity = 41/67 (61.19%), Postives = 51/67 (76.12%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHA 207
            KI +LN   E   I TWSRAS I+P MVGHTIA++NG +H+P+YIT+ MVGH+LGEF+ T  F GHA
Sbjct:   18 KIKQLNEAGEKKIIKTWSRASMIVPEMVGHTIAVYNGLKHIPVYITENMVGHRLGEFSFTRRFGGHA 84          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RS19_STRZT (30S ribosomal protein S19 OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=rpsS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.653e-18
Identity = 38/75 (50.67%), Postives = 56/75 (74.67%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            K++      +   I TWSR STI P+ +G+TIA+++GR+H+P+YI + MVGHKLGEFAPT  ++GHA +D ++RR
Sbjct:   18 KVEAQANDEKKKVIKTWSRRSTIFPSFIGYTIAVYDGRKHVPVYIQEDMVGHKLGEFAPTRTYKGHAADDKKTRR 92          
The following BLAST results are available for this feature:
BLAST of CK939684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS19_COLP32.142e-1857.5830S ribosomal protein S19 OS=Colwellia psychreryth... [more]
RS19_PROVI2.797e-1858.7330S ribosomal protein S19 OS=Prosthecochloris vibr... [more]
RS19_PHYAS2.797e-1854.6730S ribosomal protein S19 OS=Phytoplasma australie... [more]
RS19_LACLS2.797e-1858.5730S ribosomal protein S19 OS=Lactococcus lactis su... [more]
RS19_LACLM2.797e-1858.5730S ribosomal protein S19 OS=Lactococcus lactis su... [more]
RS19_BLOFL2.797e-1850.6730S ribosomal protein S19 OS=Blochmannia floridanu... [more]
RS19_BACV82.797e-1852.7830S ribosomal protein S19 OS=Bacteroides vulgatus ... [more]
RS19_BACSK2.797e-1850.6730S ribosomal protein S19 OS=Bacillus clausii (str... [more]
RS19_THEM43.653e-1861.1930S ribosomal protein S19 OS=Thermosipho melanesie... [more]
RS19_STRZT3.653e-1850.6730S ribosomal protein S19 OS=Streptococcus pneumon... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004747_A03 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIIF_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939684 ID=CK939684; Name=CK939684; organism=Citrus sinensis; type=EST; length=287bp
GGGGGAAAAATTGATAAGCTTAATACAAAAGCGGAANNNNANNNNATAAT
AACTTGGTCCCGGGCATCTACCATTATACCCACAATGGTCGGCCATACTA
TTGCTATCCATAATGGAAGGGAGCATTTGCCTATTTATATAACAGATCGT
ATGGTAGGACATAAATTGGGAGAATTTGCGCCCACTATCAATTTCCGTGG
ACATGCAAAAAATGATAATAGATCCCGTCGTTAATAAAGTGAATATAGAT
TCATTGGTGAGAGGTGAACCTTATGATAAGGATAATA
back to top