CK939684

Overview
NameCK939684
Unique NameCK939684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length287
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_BUXMI (30S ribosomal protein S19, chloroplastic OS=Buxus microphylla GN=rps19 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.206e-31
Identity = 60/75 (80.00%), Postives = 70/75 (93.33%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+KLN +A+   I+TWSRASTIIPTM+GHTIAIHNG+EHLPI+ITDRMVGHKLGEFAPT+NFR HA+NDN+SRR
Sbjct:   18 KIEKLNMRAKKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPIFITDRMVGHKLGEFAPTLNFREHARNDNKSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_NANDO (30S ribosomal protein S19, chloroplastic OS=Nandina domestica GN=rps19 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.095e-30
Identity = 59/76 (77.63%), Postives = 68/76 (89.47%), Query Frame = 1
Query:    4 GKIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            GKI+KLN +AE   I+TWSRASTIIP M+GHTIAIHNG+EHLPIYIT+ MVGHKLGEFAPT+ FRGHA+ND +SRR
Sbjct:   17 GKIEKLNMRAEKEIIVTWSRASTIIPIMIGHTIAIHNGKEHLPIYITESMVGHKLGEFAPTLTFRGHARNDKKSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_MARPO (30S ribosomal protein S19, chloroplastic OS=Marchantia polymorpha GN=rps19 PE=3 SV=3)

HSP 1 Score: 131.339 bits (329), Expect = 1.430e-30
Identity = 60/75 (80.00%), Postives = 66/75 (88.00%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+ LN K E   IITWSRASTI+PTM+GHTIA+HNG+EHLPIYITDRMVGHKLGEFAPT  FRGHAKND +SRR
Sbjct:   18 KIENLNLKKEKKIIITWSRASTIVPTMIGHTIAVHNGQEHLPIYITDRMVGHKLGEFAPTRTFRGHAKNDKKSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_IPOPU (30S ribosomal protein S19, chloroplastic OS=Ipomoea purpurea GN=rps19 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.868e-30
Identity = 61/75 (81.33%), Postives = 65/75 (86.67%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KIDKLN KAE   I TWSR STIIPTM+GHTIAIHNG+EHLPIYITD MVGHKLGEFA T NFRGH K+DN+SRR
Sbjct:   18 KIDKLNRKAEKEIIRTWSRGSTIIPTMIGHTIAIHNGKEHLPIYITDHMVGHKLGEFASTFNFRGHTKSDNKSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_CALFG (30S ribosomal protein S19, chloroplastic OS=Calycanthus floridus var. glaucus GN=rps19 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.868e-30
Identity = 59/75 (78.67%), Postives = 67/75 (89.33%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+KLN + E   I+TWSRASTIIPTM+GHTIAIHNG+EHLPI+ITDRMVGHKLGEFAPT+ FRGHA+ D RSRR
Sbjct:   18 KIEKLNMREEKETIVTWSRASTIIPTMIGHTIAIHNGKEHLPIFITDRMVGHKLGEFAPTLTFRGHARTDTRSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_AMBTC (30S ribosomal protein S19, chloroplastic OS=Amborella trichopoda GN=rps19 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.439e-30
Identity = 57/75 (76.00%), Postives = 68/75 (90.67%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI KLNT+ E   I+TWSRASTIIPTM+GHTIAIHNG+EHLP+Y+TDRMVGHKLGEFAPT+ F+GHA+ND++ RR
Sbjct:   18 KIHKLNTREEKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPVYVTDRMVGHKLGEFAPTLTFQGHARNDSKFRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_DRIGR (30S ribosomal protein S19, chloroplastic OS=Drimys granadensis GN=rps19 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.161e-30
Identity = 59/76 (77.63%), Postives = 67/76 (88.16%), Query Frame = 1
Query:    4 GKIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            GKI+KLN + E   I+TWSRASTIIPTM+GHTIAIHNG+ HLPIYI DRMVGHKLGEFAPT+ FRGHA+N+N SRR
Sbjct:   17 GKIEKLNMREEKEIIVTWSRASTIIPTMIGHTIAIHNGKAHLPIYIIDRMVGHKLGEFAPTLTFRGHARNNNVSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_CUSEX (30S ribosomal protein S19, plastid OS=Cuscuta exaltata GN=rps19 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.161e-30
Identity = 62/75 (82.67%), Postives = 64/75 (85.33%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KIDKLN KAE   IITWSR STIIP MVGHTIAIH G+EHLPIYI D MVGHKLGEFA T NFRGHAK+DNRSRR
Sbjct:   18 KIDKLNIKAEKEIIITWSRGSTIIPIMVGHTIAIHTGKEHLPIYIMDHMVGHKLGEFASTFNFRGHAKSDNRSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_VITVI (30S ribosomal protein S19, chloroplastic OS=Vitis vinifera GN=rps19 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.434e-30
Identity = 59/75 (78.67%), Postives = 65/75 (86.67%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI  LNT  E   I+TWSR STIIPTM+GHTIA+HNG+EH PIYITDRMVGHKLGEF+ T+NFRGHAKNDNRSRR
Sbjct:   18 KIAMLNTTWEKEIIVTWSRTSTIIPTMIGHTIAVHNGKEHFPIYITDRMVGHKLGEFSSTLNFRGHAKNDNRSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_EPIVI (Plastid 30S ribosomal protein S19 OS=Epifagus virginiana GN=rps19 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.097e-30
Identity = 58/75 (77.33%), Postives = 66/75 (88.00%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+KLN K +   I+TWSRASTIIP M+GH I+IHNG+EHLPIYITD MVGHKLGEF PT+NFRGHAK+DNRSRR
Sbjct:   20 KINKLNNKKKKEIIVTWSRASTIIPIMIGHMISIHNGKEHLPIYITDHMVGHKLGEFVPTLNFRGHAKSDNRSRR 94          
The following BLAST results are available for this feature:
BLAST of CK939684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR19_BUXMI2.206e-3180.0030S ribosomal protein S19, chloroplastic OS=Buxus ... [more]
RR19_NANDO1.095e-3077.6330S ribosomal protein S19, chloroplastic OS=Nandin... [more]
RR19_MARPO1.430e-3080.0030S ribosomal protein S19, chloroplastic OS=Marcha... [more]
RR19_IPOPU1.868e-3081.3330S ribosomal protein S19, chloroplastic OS=Ipomoe... [more]
RR19_CALFG1.868e-3078.6730S ribosomal protein S19, chloroplastic OS=Calyca... [more]
RR19_AMBTC2.439e-3076.0030S ribosomal protein S19, chloroplastic OS=Ambore... [more]
RR19_DRIGR4.161e-3077.6330S ribosomal protein S19, chloroplastic OS=Drimys... [more]
RR19_CUSEX4.161e-3082.6730S ribosomal protein S19, plastid OS=Cuscuta exal... [more]
RR19_VITVI5.434e-3078.6730S ribosomal protein S19, chloroplastic OS=Vitis ... [more]
RR19_EPIVI7.097e-3077.33Plastid 30S ribosomal protein S19 OS=Epifagus virg... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004747_A03 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIIF_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939684 ID=CK939684; Name=CK939684; organism=Citrus sinensis; type=EST; length=287bp
GGGGGAAAAATTGATAAGCTTAATACAAAAGCGGAANNNNANNNNATAAT
AACTTGGTCCCGGGCATCTACCATTATACCCACAATGGTCGGCCATACTA
TTGCTATCCATAATGGAAGGGAGCATTTGCCTATTTATATAACAGATCGT
ATGGTAGGACATAAATTGGGAGAATTTGCGCCCACTATCAATTTCCGTGG
ACATGCAAAAAATGATAATAGATCCCGTCGTTAATAAAGTGAATATAGAT
TCATTGGTGAGAGGTGAACCTTATGATAAGGATAATA
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