CK939684

Overview
NameCK939684
Unique NameCK939684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length287
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_PHAAO (30S ribosomal protein S19, chloroplastic OS=Phalaenopsis aphrodite subsp. formosana GN=rps19 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.269e-30
Identity = 58/76 (76.32%), Postives = 67/76 (88.16%), Query Frame = 1
Query:    4 GKIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            G+I+KLN + E   I+TWSRASTIIPTM+GHTIAIHNG+EHLPIYITDRMVGHKLGEFAPT+ F  HA+ND +SRR
Sbjct:   17 GRIEKLNRREEKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFAPTLTFVRHARNDKKSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_NYMAL (30S ribosomal protein S19, chloroplastic OS=Nymphaea alba GN=rps19 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.211e-29
Identity = 59/75 (78.67%), Postives = 66/75 (88.00%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+KLN   E   I+TWSRASTII  MVGHTIA+HNG+EHLPIYIT+RMVGHKLGEFAPT+ FRGHA+NDNRSRR
Sbjct:   18 KIEKLNKAEERSIIVTWSRASTIIFAMVGHTIAVHNGKEHLPIYITERMVGHKLGEFAPTLTFRGHARNDNRSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_PEA (30S ribosomal protein S19, chloroplastic OS=Pisum sativum GN=rps19 PE=3 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 1.581e-29
Identity = 59/75 (78.67%), Postives = 65/75 (86.67%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI KLNTK E   I TWSR STIIP M+GHTIAIHNG+EHLP+YITDRMVGHKLGEF+PT+NF G AKNDN+SRR
Sbjct:   18 KIKKLNTKGEKAIIKTWSRKSTIIPIMIGHTIAIHNGKEHLPVYITDRMVGHKLGEFSPTLNFGGFAKNDNKSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_CYCTA (30S ribosomal protein S19, chloroplastic OS=Cycas taitungensis GN=rps19 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.581e-29
Identity = 58/75 (77.33%), Postives = 66/75 (88.00%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+ LN K E   I+TWSRASTI+P M+GHTIA+HNG+EHLPIYITDRMVGHKLGEFAPT+  RGHAK+DNRSRR
Sbjct:   18 KIENLNIKKEKKIIVTWSRASTIVPAMIGHTIAVHNGKEHLPIYITDRMVGHKLGEFAPTLIPRGHAKSDNRSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_PHYPA (30S ribosomal protein S19, chloroplastic OS=Physcomitrella patens GN=rps19 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.697e-29
Identity = 57/75 (76.00%), Postives = 66/75 (88.00%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+ LN K E   IITWSRASTI+PTM+GHTIA++NG+EHLPIYITDRM+GHKLGEFAPT NFRGH K+D +SRR
Sbjct:   18 KIEDLNLKKEKKIIITWSRASTIVPTMIGHTIAVYNGQEHLPIYITDRMIGHKLGEFAPTRNFRGHTKSDKKSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_HUPLU (30S ribosomal protein S19, chloroplastic OS=Huperzia lucidula GN=rps19 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.600e-29
Identity = 57/75 (76.00%), Postives = 65/75 (86.67%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+ LN + E   I+TWSRASTI+P MVGHTIA+HNG+EHLPIY+TDRMVGHKLGEFAPT  FRGHAKND +SRR
Sbjct:   18 KIENLNVEEEKKIIVTWSRASTIVPIMVGHTIAVHNGQEHLPIYVTDRMVGHKLGEFAPTRIFRGHAKNDKKSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_LEMMI (30S ribosomal protein S19, chloroplastic OS=Lemna minor GN=rps19 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.025e-28
Identity = 58/75 (77.33%), Postives = 66/75 (88.00%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+KLN + E   I+TWSRASTIIPTM+GHTIAIHNG+EHLPIYITDRMVGHKLGEFAPT +F  HA+ND +SRR
Sbjct:   18 KIEKLNMRQEKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFAPTRSFGKHARNDIKSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_CUSGR (30S ribosomal protein S19, plastid OS=Cuscuta gronovii GN=rps19 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.025e-28
Identity = 58/75 (77.33%), Postives = 64/75 (85.33%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+KLN KA+   IITWSR STIIP M+GHTIAIHNG+EHLPIYI D MVGHKLGEFA T+NFRGH K DN+SRR
Sbjct:   18 KINKLNRKAQKEIIITWSRGSTIIPIMIGHTIAIHNGKEHLPIYIMDDMVGHKLGEFAATLNFRGHEKGDNKSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_CUSOB (30S ribosomal protein S19, plastid OS=Cuscuta obtusiflora GN=rps19 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.338e-28
Identity = 58/75 (77.33%), Postives = 64/75 (85.33%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+KLN KA+   IITWSR STIIP M+GHTIAIHNG+EHLPIYI D MVGHKLGEFA T+NFRGH K DN+SRR
Sbjct:   18 KINKLNRKAKKEIIITWSRGSTIIPIMIGHTIAIHNGKEHLPIYIMDDMVGHKLGEFAATLNFRGHEKGDNKSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_OENPA (30S ribosomal protein S19, chloroplastic OS=Oenothera parviflora GN=rps19 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.283e-28
Identity = 58/75 (77.33%), Postives = 65/75 (86.67%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            K++KLN + +   I TWSRASTII TM+GHTIAIHNG+EHLPIYITD MVGHKLGEFAPTINF  HAKNDN+SRR
Sbjct:   18 KMEKLNRREDKILIRTWSRASTIILTMIGHTIAIHNGKEHLPIYITDYMVGHKLGEFAPTINFHEHAKNDNKSRR 92          
The following BLAST results are available for this feature:
BLAST of CK939684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR19_PHAAO9.269e-3076.3230S ribosomal protein S19, chloroplastic OS=Phalae... [more]
RR19_NYMAL1.211e-2978.6730S ribosomal protein S19, chloroplastic OS=Nympha... [more]
RR19_PEA1.581e-2978.6730S ribosomal protein S19, chloroplastic OS=Pisum ... [more]
RR19_CYCTA1.581e-2977.3330S ribosomal protein S19, chloroplastic OS=Cycas ... [more]
RR19_PHYPA2.697e-2976.0030S ribosomal protein S19, chloroplastic OS=Physco... [more]
RR19_HUPLU4.600e-2976.0030S ribosomal protein S19, chloroplastic OS=Huperz... [more]
RR19_LEMMI1.025e-2877.3330S ribosomal protein S19, chloroplastic OS=Lemna ... [more]
RR19_CUSGR1.025e-2877.3330S ribosomal protein S19, plastid OS=Cuscuta gron... [more]
RR19_CUSOB1.338e-2877.3330S ribosomal protein S19, plastid OS=Cuscuta obtu... [more]
RR19_OENPA2.283e-2877.3330S ribosomal protein S19, chloroplastic OS=Oenoth... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004747_A03 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIIF_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939684 ID=CK939684; Name=CK939684; organism=Citrus sinensis; type=EST; length=287bp
GGGGGAAAAATTGATAAGCTTAATACAAAAGCGGAANNNNANNNNATAAT
AACTTGGTCCCGGGCATCTACCATTATACCCACAATGGTCGGCCATACTA
TTGCTATCCATAATGGAAGGGAGCATTTGCCTATTTATATAACAGATCGT
ATGGTAGGACATAAATTGGGAGAATTTGCGCCCACTATCAATTTCCGTGG
ACATGCAAAAAATGATAATAGATCCCGTCGTTAATAAAGTGAATATAGAT
TCATTGGTGAGAGGTGAACCTTATGATAAGGATAATA
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