CK939684

Overview
NameCK939684
Unique NameCK939684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length287
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_OENGL (30S ribosomal protein S19, chloroplastic OS=Oenothera glazioviana GN=rps19 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.283e-28
Identity = 58/75 (77.33%), Postives = 65/75 (86.67%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            K++KLN + +   I TWSRASTII TM+GHTIAIHNG+EHLPIYITD MVGHKLGEFAPTINF  HAKNDN+SRR
Sbjct:   18 KMEKLNRREDKILIRTWSRASTIILTMIGHTIAIHNGKEHLPIYITDYMVGHKLGEFAPTINFHEHAKNDNKSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_OENEH (30S ribosomal protein S19, chloroplastic OS=Oenothera elata subsp. hookeri GN=rps19 PE=3 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 2.283e-28
Identity = 58/75 (77.33%), Postives = 65/75 (86.67%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            K++KLN + +   I TWSRASTII TM+GHTIAIHNG+EHLPIYITD MVGHKLGEFAPTINF  HAKNDN+SRR
Sbjct:   18 KMEKLNRREDKILIRTWSRASTIILTMIGHTIAIHNGKEHLPIYITDYMVGHKLGEFAPTINFHEHAKNDNKSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_OENBI (30S ribosomal protein S19, chloroplastic OS=Oenothera biennis GN=rps19 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.283e-28
Identity = 58/75 (77.33%), Postives = 65/75 (86.67%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            K++KLN + +   I TWSRASTII TM+GHTIAIHNG+EHLPIYITD MVGHKLGEFAPTINF  HAKNDN+SRR
Sbjct:   18 KMEKLNRREDKILIRTWSRASTIILTMIGHTIAIHNGKEHLPIYITDYMVGHKLGEFAPTINFHEHAKNDNKSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_OENAR (30S ribosomal protein S19, chloroplastic OS=Oenothera argillicola GN=rps19 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.283e-28
Identity = 58/75 (77.33%), Postives = 65/75 (86.67%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            K++KLN + +   I TWSRASTII TM+GHTIAIHNG+EHLPIYITD MVGHKLGEFAPTINF  HAKNDN+SRR
Sbjct:   18 KMEKLNRREDKILIRTWSRASTIILTMIGHTIAIHNGKEHLPIYITDYMVGHKLGEFAPTINFHEHAKNDNKSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_CUSRE (30S ribosomal protein S19, plastid OS=Cuscuta reflexa GN=rps19 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.283e-28
Identity = 60/75 (80.00%), Postives = 62/75 (82.67%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI KLN K E   IITWSR STIIP MVGHTIAIH G+EHLPIYI D MVGHKLGEFA T+NFRGHAK DNRSRR
Sbjct:   18 KIYKLNIKTEKEIIITWSRGSTIIPIMVGHTIAIHTGKEHLPIYIMDHMVGHKLGEFAFTLNFRGHAKTDNRSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_PICAB (30S ribosomal protein S19, chloroplastic OS=Picea abies GN=rps19 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.086e-28
Identity = 54/75 (72.00%), Postives = 63/75 (84.00%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI  LN K E   I+TWSRAS I+P M+GHTIA+HNGREHLPIY+TDRMV HKLGEFAPT+ F+GHA+ND +SRR
Sbjct:   18 KIQNLNIKEEKKIIVTWSRASVIVPAMIGHTIAVHNGREHLPIYVTDRMVDHKLGEFAPTLLFQGHARNDKKSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_DIOEL (30S ribosomal protein S19, chloroplastic OS=Dioscorea elephantipes GN=rps19 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.086e-28
Identity = 54/76 (71.05%), Postives = 64/76 (84.21%), Query Frame = 1
Query:    4 GKIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            GKI+KLN + E   I+TWSR STIIP M+GHTIAIHNG+EH PIYITD+MVGHKLGEF+PT+ F  H +NDN+SRR
Sbjct:   17 GKIEKLNMREEKEIIVTWSRGSTIIPAMMGHTIAIHNGKEHFPIYITDQMVGHKLGEFSPTLTFARHTRNDNKSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_PINTH (30S ribosomal protein S19, chloroplastic OS=Pinus thunbergii GN=rps19 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.642e-28
Identity = 54/75 (72.00%), Postives = 63/75 (84.00%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI  LN K E   I+TWSRAS I+P M+GHTIA+HNGREHLPIY+TDRMV HKLGEFAPT+ F+GHA+ND +SRR
Sbjct:   18 KIKNLNIKEEKKIIVTWSRASVIVPAMIGHTIAVHNGREHLPIYVTDRMVDHKLGEFAPTLLFQGHARNDKKSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_PINKO (30S ribosomal protein S19, chloroplastic OS=Pinus koraiensis GN=rps19 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.642e-28
Identity = 54/75 (72.00%), Postives = 63/75 (84.00%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI  LN K E   I+TWSRAS I+P M+GHTIA+HNGREHLPIY+TDRMV HKLGEFAPT+ F+GHA+ND +SRR
Sbjct:   18 KIKNLNIKKEKKIIVTWSRASVIVPAMIGHTIAVHNGREHLPIYVTDRMVDHKLGEFAPTLLFQGHARNDKKSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_STAPU (30S ribosomal protein S19, chloroplastic OS=Staurastrum punctulatum GN=rps19 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.675e-28
Identity = 55/75 (73.33%), Postives = 63/75 (84.00%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+ LN + E   IITWSRAS I+P M+GHTIA+HNGREHLP+YITD MVGHKLGEFAPT  FRGHAK+D +SRR
Sbjct:   18 KIESLNAQGEKKVIITWSRASIIVPGMIGHTIAVHNGREHLPVYITDLMVGHKLGEFAPTRTFRGHAKSDKKSRR 92          
The following BLAST results are available for this feature:
BLAST of CK939684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR19_OENGL2.283e-2877.3330S ribosomal protein S19, chloroplastic OS=Oenoth... [more]
RR19_OENEH2.283e-2877.3330S ribosomal protein S19, chloroplastic OS=Oenoth... [more]
RR19_OENBI2.283e-2877.3330S ribosomal protein S19, chloroplastic OS=Oenoth... [more]
RR19_OENAR2.283e-2877.3330S ribosomal protein S19, chloroplastic OS=Oenoth... [more]
RR19_CUSRE2.283e-2880.0030S ribosomal protein S19, plastid OS=Cuscuta refl... [more]
RR19_PICAB5.086e-2872.0030S ribosomal protein S19, chloroplastic OS=Picea ... [more]
RR19_DIOEL5.086e-2871.0530S ribosomal protein S19, chloroplastic OS=Diosco... [more]
RR19_PINTH6.642e-2872.0030S ribosomal protein S19, chloroplastic OS=Pinus ... [more]
RR19_PINKO6.642e-2872.0030S ribosomal protein S19, chloroplastic OS=Pinus ... [more]
RR19_STAPU8.675e-2873.3330S ribosomal protein S19, chloroplastic OS=Staura... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004747_A03 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIIF_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939684 ID=CK939684; Name=CK939684; organism=Citrus sinensis; type=EST; length=287bp
GGGGGAAAAATTGATAAGCTTAATACAAAAGCGGAANNNNANNNNATAAT
AACTTGGTCCCGGGCATCTACCATTATACCCACAATGGTCGGCCATACTA
TTGCTATCCATAATGGAAGGGAGCATTTGCCTATTTATATAACAGATCGT
ATGGTAGGACATAAATTGGGAGAATTTGCGCCCACTATCAATTTCCGTGG
ACATGCAAAAAATGATAATAGATCCCGTCGTTAATAAAGTGAATATAGAT
TCATTGGTGAGAGGTGAACCTTATGATAAGGATAATA
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