CK939684

Overview
NameCK939684
Unique NameCK939684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length287
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_ANEMR (30S ribosomal protein S19, plastid OS=Aneura mirabilis GN=rps19 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.675e-28
Identity = 55/75 (73.33%), Postives = 63/75 (84.00%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            +I+ LN       ++TWSRASTI+P M+GHTIAIHNGREHLPIYITDRMVGHKLGEFAPT  FRGHA+ND +SRR
Sbjct:   18 EIEILNFGGSEEVVVTWSRASTIVPVMIGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTRTFRGHARNDKKSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_CHAGL (30S ribosomal protein S19, chloroplastic OS=Chaetosphaeridium globosum GN=rps19 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.480e-27
Identity = 53/75 (70.67%), Postives = 63/75 (84.00%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+ LN K E   IITWSRASTI+P M+GHTIA+HNGREHLP+++TDRMVG KLGEF+PT  FRGH K+D +SRR
Sbjct:   18 KIENLNAKGEKKVIITWSRASTIVPMMIGHTIAVHNGREHLPVFVTDRMVGQKLGEFSPTRTFRGHVKSDKKSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_ANTFO (30S ribosomal protein S19, chloroplastic OS=Anthoceros formosae GN=rps19 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.297e-27
Identity = 55/75 (73.33%), Postives = 65/75 (86.67%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+ LN K E   I+TWSRASTI+PTM+GHTIA++NG+EHLPIYITDRMVGHKLGEFA T  F+GHAK+D +SRR
Sbjct:   18 KIEDLNIKREKKIIVTWSRASTIVPTMIGHTIAVYNGQEHLPIYITDRMVGHKLGEFALTRVFKGHAKSDKKSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_SPIMX (30S ribosomal protein S19, chloroplastic OS=Spirogyra maxima GN=rps19 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.592e-27
Identity = 51/75 (68.00%), Postives = 64/75 (85.33%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+ LN++ E   I+TWSR STI+P M+GHTIA++NGREHLPI++TD MVGHKLGEF+PT  FRGHAK+D +SRR
Sbjct:   18 KIENLNSQGEKRVIVTWSRGSTIVPAMIGHTIAVYNGREHLPIFVTDLMVGHKLGEFSPTRTFRGHAKSDKKSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_PSINU (30S ribosomal protein S19, chloroplastic OS=Psilotum nudum GN=rps19 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.592e-27
Identity = 54/75 (72.00%), Postives = 62/75 (82.67%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+ LN K E   IITWSRASTI+P M+GHTIA++NGREHLPIY+TDRMVGHKLGEF  T  FRGHA+ D +SRR
Sbjct:   18 KIESLNIKKEKRVIITWSRASTIVPGMIGHTIAVYNGREHLPIYVTDRMVGHKLGEFVLTRTFRGHARKDKKSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RS19_CYAP8 (30S ribosomal protein S19 OS=Cyanothece sp. (strain PCC 8801) GN=rpsS PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.253e-26
Identity = 51/75 (68.00%), Postives = 65/75 (86.67%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+KLN K +   I TWSRASTI+P MVGHTIA+HNG++H+P+Y++++MVGHKLGEFAPT  FRGHAK+D +SRR
Sbjct:   18 KIEKLNEKGDKQVIKTWSRASTILPQMVGHTIAVHNGKQHVPVYVSEQMVGHKLGEFAPTRTFRGHAKSDKKSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RS19_CYAP7 (30S ribosomal protein S19 OS=Cyanothece sp. (strain PCC 7424) GN=rpsS PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.253e-26
Identity = 53/75 (70.67%), Postives = 65/75 (86.67%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+KLN K E   I TWSRASTIIP MVGHTIA+HNG++H+PI+I+++MVGHKLGEFAPT  FRGHAK+D ++RR
Sbjct:   18 KIEKLNEKGEKQVIKTWSRASTIIPDMVGHTIAVHNGKQHVPIFISEQMVGHKLGEFAPTRTFRGHAKSDKKARR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_MESVI (30S ribosomal protein S19, chloroplastic OS=Mesostigma viride GN=rps19 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.253e-26
Identity = 53/75 (70.67%), Postives = 62/75 (82.67%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+ LN K E   I TWSR STI+P M+GHTIA+HNGREHLPI+ITD+MVGHKLGEF+PT  FRGH K+D +SRR
Sbjct:   18 KIEFLNVKKEKKVITTWSRGSTILPIMIGHTIAVHNGREHLPIFITDQMVGHKLGEFSPTRTFRGHTKSDKKSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_CHAVU (30S ribosomal protein S19, chloroplastic OS=Chara vulgaris GN=rps19 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.253e-26
Identity = 53/75 (70.67%), Postives = 64/75 (85.33%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            K+  LN +A+   I+TWSR STIIP+M+GHTIAIHNGREH+PI+ITD+MVGHKLGEF+ T  FRGHAKND +SRR
Sbjct:   18 KVHILNLEAQKKVILTWSRGSTIIPSMIGHTIAIHNGREHIPIFITDQMVGHKLGEFSATRTFRGHAKNDKKSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_CHLVU (30S ribosomal protein S19, chloroplastic OS=Chlorella vulgaris GN=rps19 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.636e-26
Identity = 49/75 (65.33%), Postives = 64/75 (85.33%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            K+++LNT+ +   I TWSR+STI+P M+GHTIA+HNGREH+P++ITD+MVGHKLGEFAPT  FRGH K D +S+R
Sbjct:   18 KVERLNTQGDKKVIKTWSRSSTIVPLMIGHTIAVHNGREHIPVFITDQMVGHKLGEFAPTRTFRGHVKKDKKSKR 92          
The following BLAST results are available for this feature:
BLAST of CK939684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR19_ANEMR8.675e-2873.3330S ribosomal protein S19, plastid OS=Aneura mirab... [more]
RR19_CHAGL1.480e-2770.6730S ribosomal protein S19, chloroplastic OS=Chaeto... [more]
RR19_ANTFO3.297e-2773.3330S ribosomal protein S19, chloroplastic OS=Anthoc... [more]
RR19_SPIMX9.592e-2768.0030S ribosomal protein S19, chloroplastic OS=Spirog... [more]
RR19_PSINU9.592e-2772.0030S ribosomal protein S19, chloroplastic OS=Psilot... [more]
RS19_CYAP81.253e-2668.0030S ribosomal protein S19 OS=Cyanothece sp. (strai... [more]
RS19_CYAP71.253e-2670.6730S ribosomal protein S19 OS=Cyanothece sp. (strai... [more]
RR19_MESVI1.253e-2670.6730S ribosomal protein S19, chloroplastic OS=Mesost... [more]
RR19_CHAVU1.253e-2670.6730S ribosomal protein S19, chloroplastic OS=Chara ... [more]
RR19_CHLVU1.636e-2665.3330S ribosomal protein S19, chloroplastic OS=Chlore... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004747_A03 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIIF_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939684 ID=CK939684; Name=CK939684; organism=Citrus sinensis; type=EST; length=287bp
GGGGGAAAAATTGATAAGCTTAATACAAAAGCGGAANNNNANNNNATAAT
AACTTGGTCCCGGGCATCTACCATTATACCCACAATGGTCGGCCATACTA
TTGCTATCCATAATGGAAGGGAGCATTTGCCTATTTATATAACAGATCGT
ATGGTAGGACATAAATTGGGAGAATTTGCGCCCACTATCAATTTCCGTGG
ACATGCAAAAAATGATAATAGATCCCGTCGTTAATAAAGTGAATATAGAT
TCATTGGTGAGAGGTGAACCTTATGATAAGGATAATA
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