CK939684

Overview
NameCK939684
Unique NameCK939684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length287
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_ADICA (30S ribosomal protein S19, chloroplastic OS=Adiantum capillus-veneris GN=rps19 PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 2.137e-26
Identity = 53/75 (70.67%), Postives = 61/75 (81.33%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            +I  LN + +   I TWSRAS I+P M+GHTIA+HNGREHLPIY+TDRMVGHKLGEF PT NFRGHAK+D  SRR
Sbjct:   18 EIRNLNIQKKRKLITTWSRASAIVPIMIGHTIAVHNGREHLPIYVTDRMVGHKLGEFVPTRNFRGHAKSDKGSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_OEDCA (30S ribosomal protein S19, chloroplastic OS=Oedogonium cardiacum GN=rps19 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.760e-26
Identity = 48/75 (64.00%), Postives = 64/75 (85.33%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+KLN K +   ++TWSR+STI+P M+GHTIA+HNGREH+P++ITD+MVGHKLGEF+ T  +RGHAK D +S+R
Sbjct:   18 KIEKLNNKGKKKVLVTWSRSSTIVPVMIGHTIAVHNGREHIPVFITDKMVGHKLGEFSLTRTYRGHAKTDKKSKR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_ANGEV (30S ribosomal protein S19, chloroplastic OS=Angiopteris evecta GN=rps19 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.217e-26
Identity = 52/75 (69.33%), Postives = 64/75 (85.33%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+ LN + E   I+T SRASTI+PTM+GHTIA++NG+EHLPIYITDRM+GHKLGEF PT  FRGHA++D +SRR
Sbjct:   18 KIENLNLRKEKKIIVTRSRASTIVPTMIGHTIAVYNGQEHLPIYITDRMIGHKLGEFVPTRIFRGHARSDKKSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RS19_CYAA5 (30S ribosomal protein S19 OS=Cyanothece sp. (strain ATCC 51142) GN=rpsS PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.120e-26
Identity = 50/75 (66.67%), Postives = 64/75 (85.33%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+KLN K +   I TWSRASTIIP M+GHTIA+HNG++H+PI+I+++MVGHKLGEFAPT  FRGH+K D ++RR
Sbjct:   18 KIEKLNEKGDKQVIKTWSRASTIIPAMIGHTIAVHNGKQHVPIFISEQMVGHKLGEFAPTRTFRGHSKGDKKARR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_CYAPA (Cyanelle 30S ribosomal protein S19 OS=Cyanophora paradoxa GN=rps19 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.120e-26
Identity = 50/75 (66.67%), Postives = 63/75 (84.00%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            K++ LNT  +   I TWSRASTI+P MVGHTIA+HNGR+HLP++ITD+MVGHKLGEFAPT  F+GH K+D ++RR
Sbjct:   18 KVELLNTSGKTEVIKTWSRASTILPMMVGHTIAVHNGRQHLPVFITDQMVGHKLGEFAPTRTFKGHTKSDKKARR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_OLTVI (30S ribosomal protein S19, chloroplastic OS=Oltmannsiellopsis viridis GN=rps19 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.060e-25
Identity = 47/75 (62.67%), Postives = 63/75 (84.00%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            K++KLN + +   I TWSRASTI+P M+GHTIA+HNGREH+P+++TD+MVGHKLGEFAPT  FRGH  +D +++R
Sbjct:   18 KVEKLNAQNDKKVITTWSRASTIVPVMIGHTIAVHNGREHIPVFVTDQMVGHKLGEFAPTRTFRGHKNSDKKAKR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_CHLAT (30S ribosomal protein S19, chloroplastic OS=Chlorokybus atmophyticus GN=rps19 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.060e-25
Identity = 50/75 (66.67%), Postives = 62/75 (82.67%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+ LN + E   I TWSR STI+P M+GHTIA++NGREHLPI++TD+MVGHKLGEF+PT  FRGH K+D +SRR
Sbjct:   18 KIEYLNARREKQVITTWSRGSTIVPIMIGHTIAVYNGREHLPIFVTDQMVGHKLGEFSPTRTFRGHVKSDKKSRR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RR19_NEPOL (30S ribosomal protein S19, chloroplastic OS=Nephroselmis olivacea GN=rps19 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.809e-25
Identity = 51/75 (68.00%), Postives = 60/75 (80.00%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+K+N K E   I TWSRASTIIP M+GHTIAIHNG+ HLPI+I DRM+GHKLGEF  T N+RGH K D ++RR
Sbjct:   18 KIEKMNGKGEKHVITTWSRASTIIPIMIGHTIAIHNGKSHLPIFINDRMIGHKLGEFVLTRNYRGHGKTDKKARR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RS19_SYNP2 (30S ribosomal protein S19 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rpsS PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.362e-25
Identity = 48/75 (64.00%), Postives = 64/75 (85.33%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KI+KLN   +   I TWSRASTI+P MVGHTIA+HNGR+H+P++++++MVGHKLGEFAPT  F+GHAK+D ++RR
Sbjct:   18 KIEKLNASGDKQVIKTWSRASTILPQMVGHTIAVHNGRQHVPVFVSEQMVGHKLGEFAPTRTFKGHAKSDKKARR 92          
BLAST of CK939684 vs. ExPASy Swiss-Prot
Match: RS19_SYNY3 (30S ribosomal protein S19 OS=Synechocystis sp. (strain PCC 6803) GN=rpsS PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.030e-25
Identity = 47/75 (62.67%), Postives = 64/75 (85.33%), Query Frame = 1
Query:    7 KIDKLNTKAEXXXIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 231
            KIDKLN K +   + TWSRASTI+P MVGHTIA+HNGR+H+P++++++MVGHKLGEFAPT  FR H+K+D ++R+
Sbjct:   18 KIDKLNDKGDKQVVKTWSRASTILPQMVGHTIAVHNGRQHVPVFVSEQMVGHKLGEFAPTRTFRSHSKSDKKARK 92          
The following BLAST results are available for this feature:
BLAST of CK939684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR19_ADICA2.137e-2670.6730S ribosomal protein S19, chloroplastic OS=Adiant... [more]
RR19_OEDCA4.760e-2664.0030S ribosomal protein S19, chloroplastic OS=Oedogo... [more]
RR19_ANGEV6.217e-2669.3330S ribosomal protein S19, chloroplastic OS=Angiop... [more]
RS19_CYAA58.120e-2666.6730S ribosomal protein S19 OS=Cyanothece sp. (strai... [more]
RR19_CYAPA8.120e-2666.67Cyanelle 30S ribosomal protein S19 OS=Cyanophora p... [more]
RR19_OLTVI1.060e-2562.6730S ribosomal protein S19, chloroplastic OS=Oltman... [more]
RR19_CHLAT1.060e-2566.6730S ribosomal protein S19, chloroplastic OS=Chloro... [more]
RR19_NEPOL1.809e-2568.0030S ribosomal protein S19, chloroplastic OS=Nephro... [more]
RS19_SYNP22.362e-2564.0030S ribosomal protein S19 OS=Synechococcus sp. (st... [more]
RS19_SYNY34.030e-2562.6730S ribosomal protein S19 OS=Synechocystis sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004747_A03 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIIF_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939684 ID=CK939684; Name=CK939684; organism=Citrus sinensis; type=EST; length=287bp
GGGGGAAAAATTGATAAGCTTAATACAAAAGCGGAANNNNANNNNATAAT
AACTTGGTCCCGGGCATCTACCATTATACCCACAATGGTCGGCCATACTA
TTGCTATCCATAATGGAAGGGAGCATTTGCCTATTTATATAACAGATCGT
ATGGTAGGACATAAATTGGGAGAATTTGCGCCCACTATCAATTTCCGTGG
ACATGCAAAAAATGATAATAGATCCCGTCGTTAATAAAGTGAATATAGAT
TCATTGGTGAGAGGTGAACCTTATGATAAGGATAATA
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