CK939683

Overview
NameCK939683
Unique NameCK939683
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_TRIEI (Imidazoleglycerol-phosphate dehydratase OS=Trichodesmium erythraeum (strain IMS101) GN=hisB PE=3 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 4.639e-72
Identity = 136/194 (70.10%), Postives = 155/194 (79.90%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            R   VKR T ET+V+V +N+DG G   ++T IPFLDHML Q++SHGL D+ V+A GDI IDDHHTNEDVG+ +G AL QALGDRKGI RFG F APLDEAL+ V+LD SGRPHL+Y L++PTQRVG YDTQLV  FF +L N S MTLHIRQL G NSHHIIEA FKAFAR+LR ATE DPRR G IPSSKGVL
Sbjct:   20 RRASVKRKTGETDVTVNLNLDGVGNCQANTGIPFLDHMLHQISSHGLIDLDVQAVGDIEIDDHHTNEDVGITLGQALKQALGDRKGIVRFGHFLAPLDEALVEVALDFSGRPHLSYGLEMPTQRVGNYDTQLVREFFVALANNSLMTLHIRQLGGINSHHIIEAGFKAFARSLRMATEIDPRRVGEIPSSKGVL 213          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_PROMS (Imidazoleglycerol-phosphate dehydratase OS=Prochlorococcus marinus (strain AS9601) GN=hisB PE=3 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.763e-71
Identity = 127/198 (64.14%), Postives = 159/198 (80.30%), Query Frame = 1
Query:  163 VDSGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            + S R  E+KR T ET++SV IN+DGSG+++  T IPFLDHML Q++SHGLFD+ ++A GD  IDDHHTNEDVG+A+G A  +ALG+RKGI+RFG F APLDEAL+ V+LD SGRPHL+YDLQ+   R+G YDT+LV  FF + VN SG+TLHI Q+ G NSHHI+EA FKAF+RA+R ATE DPRR  +IPSSKG+L
Sbjct:    1 MSSLRQSEIKRKTNETDISVFINLDGSGISEIDTGIPFLDHMLHQISSHGLFDLQIKAIGDTHIDDHHTNEDVGIALGKAFSKALGERKGISRFGHFFAPLDEALVQVTLDCSGRPHLSYDLQLKAPRIGNYDTELVREFFIAFVNNSGITLHINQIRGSNSHHIVEACFKAFSRAMRMATEIDPRRSDSIPSSKGML 198          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_PROM5 (Imidazoleglycerol-phosphate dehydratase OS=Prochlorococcus marinus (strain MIT 9515) GN=hisB PE=3 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.763e-71
Identity = 125/198 (63.13%), Postives = 160/198 (80.81%), Query Frame = 1
Query:  163 VDSGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            + S R  E+KR T ET++S+ IN+DG+G+++  T IPFLDHML Q++SHGLFD+ +RA GD  IDDHHTNEDVG+A+G A  +ALG+RKGINRFG F APLDEAL+ V+LD SGRPHL+Y L++   R+G YDT+LV  FF + VN+SG+TLHI Q+ G+NSHHI+EA FKAF+R++R ATE D RR GTIPSSKG+L
Sbjct:    1 MSSSRQAEIKRKTNETDISIFINIDGNGISEIDTGIPFLDHMLHQISSHGLFDLKIRAIGDTHIDDHHTNEDVGIALGKAFTKALGERKGINRFGHFFAPLDEALVQVTLDCSGRPHLSYGLKLKAPRIGNYDTELVREFFIAFVNSSGITLHINQIEGRNSHHIVEACFKAFSRSMRMATEIDLRRSGTIPSSKGML 198          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_GLOVI (Imidazoleglycerol-phosphate dehydratase OS=Gloeobacter violaceus GN=hisB PE=3 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.763e-71
Identity = 126/194 (64.95%), Postives = 157/194 (80.93%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            RI    R T+ET++ +++++DG+G   + T +PFLDHML Q+A+HGL D+ V A GD+ IDDHHTNEDVG+A G  L +ALGD++GI+RFG F APLDEAL+ V LDLSGRPHL+Y L+IPTQRVG+YDTQLV  F+Q++VN S MTLH+RQ AG NSHHIIEA+FKAFARALR A E DPRR G++PSSKG L
Sbjct:    4 RIASTVRTTRETDIQIRLDLDGTGRVQAETGVPFLDHMLAQIATHGLIDIDVSAQGDLHIDDHHTNEDVGIAFGQCLAKALGDKRGISRFGHFAAPLDEALVQVVLDLSGRPHLSYGLEIPTQRVGSYDTQLVREFYQAVVNNSSMTLHLRQWAGINSHHIIEASFKAFARALRLAVEIDPRRAGSLPSSKGAL 197          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_PROM0 (Imidazoleglycerol-phosphate dehydratase OS=Prochlorococcus marinus (strain MIT 9301) GN=hisB PE=3 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 1.143e-70
Identity = 127/198 (64.14%), Postives = 159/198 (80.30%), Query Frame = 1
Query:  163 VDSGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            + S R  E+KR T ET++SV IN+DG+G+++  T IPFLDHML Q++SHGLFD+ +RA GD  IDDHHTNEDVG+A+G A  +ALG+RKGI RFG F APLDEAL+ V+LD SGRPHL+YDLQ+   R+G YDT+LV+ FF + VN SG+TLHI Q+ G NSHHI+EA FKAF+RA+R ATE D RR G+IPSSKG+L
Sbjct:    1 MSSLRQSEIKRKTNETDISVFINLDGNGISEIDTGIPFLDHMLHQISSHGLFDLKIRAIGDTHIDDHHTNEDVGIALGKAFSKALGERKGICRFGHFFAPLDEALVQVTLDCSGRPHLSYDLQLKAPRIGNYDTELVKEFFIAFVNNSGITLHINQIRGSNSHHIVEACFKAFSRAMRMATEIDLRRSGSIPSSKGML 198          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_SYNP6 (Imidazoleglycerol-phosphate dehydratase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=hisB PE=3 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 3.325e-70
Identity = 129/194 (66.49%), Postives = 151/194 (77.84%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            R   V R T ET+V V +N+DG+G   + T IPFLDHM DQ+ASHGL D+ + A GD+ IDDHHTNEDVG+  G AL +ALGDRKGI RFG F APLDEAL+ V+LD SGRPHL Y L +PT+RVGTY+TQLV  FF ++ N + +TLH+RQL G NSHHIIEATFKAFAR+LR ATE DPRR G IPSSKGVL
Sbjct:   16 RQATVSRRTGETDVQVFLNLDGTGRCQADTGIPFLDHMFDQIASHGLIDLEITAKGDLHIDDHHTNEDVGITFGLALAEALGDRKGIVRFGHFVAPLDEALVQVALDFSGRPHLTYGLTLPTERVGTYETQLVREFFVAIANNAKLTLHLRQLDGINSHHIIEATFKAFARSLRMATEVDPRRAGQIPSSKGVL 209          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_SYNE7 (Imidazoleglycerol-phosphate dehydratase OS=Synechococcus elongatus (strain PCC 7942) GN=hisB PE=3 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 3.325e-70
Identity = 129/194 (66.49%), Postives = 151/194 (77.84%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            R   V R T ET+V V +N+DG+G   + T IPFLDHM DQ+ASHGL D+ + A GD+ IDDHHTNEDVG+  G AL +ALGDRKGI RFG F APLDEAL+ V+LD SGRPHL Y L +PT+RVGTY+TQLV  FF ++ N + +TLH+RQL G NSHHIIEATFKAFAR+LR ATE DPRR G IPSSKGVL
Sbjct:   16 RQATVSRRTGETDVQVFLNLDGTGRCQADTGIPFLDHMFDQIASHGLIDLEITAKGDLHIDDHHTNEDVGITFGLALAEALGDRKGIVRFGHFVAPLDEALVQVALDFSGRPHLTYGLTLPTERVGTYETQLVREFFVAIANNAKLTLHLRQLDGINSHHIIEATFKAFARSLRMATEVDPRRAGQIPSSKGVL 209          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_PROM9 (Imidazoleglycerol-phosphate dehydratase OS=Prochlorococcus marinus (strain MIT 9312) GN=hisB PE=3 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 4.342e-70
Identity = 125/198 (63.13%), Postives = 159/198 (80.30%), Query Frame = 1
Query:  163 VDSGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            + S R  E+KR T ET++SV IN+DG+G+++  T IPFLDHML Q++SHGLFD+ ++A GD  IDDHHTNEDVG+A+G A  +ALG+RKGI+RFG F APLDEAL+ V+LD SGRPHL+YDLQ+   R+G YDT+LV+ FF + VN SG+TLHI Q+ G NSHHI+EA FKAF+RA+R ATE D RR  +IPSSKG+L
Sbjct:    1 MSSLRQSEIKRKTNETDISVLINLDGNGISEIETGIPFLDHMLHQISSHGLFDLKIKAIGDTHIDDHHTNEDVGIALGKAFSKALGERKGISRFGHFFAPLDEALVQVTLDCSGRPHLSYDLQLKAPRIGNYDTELVKEFFIAFVNNSGITLHINQIRGSNSHHIVEACFKAFSRAMRMATEIDLRRSDSIPSSKGML 198          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_PROMP (Imidazoleglycerol-phosphate dehydratase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=hisB PE=3 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 5.671e-70
Identity = 125/198 (63.13%), Postives = 159/198 (80.30%), Query Frame = 1
Query:  163 VDSGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            + S R  E+KR T ET++SV IN+DG+G+++  T IPFLDHML Q++SHGLFD+ ++A GD  IDDHHTNEDVG+A+G A  +ALG+RKGI+RFG F APLDEAL+ V+LD SGRPHL+YDLQ+   R+G YDT+LV+ FF + VN SG+TLHI Q+ G NSHHI+EA FKAF+RA+R ATE D RR  +IPSSKG+L
Sbjct:    1 MSSLRQSEIKRKTNETDISVFINLDGNGISEIETGIPFLDHMLHQISSHGLFDLKIKAIGDTHIDDHHTNEDVGIALGKAFSKALGERKGISRFGHFFAPLDEALVQVTLDCSGRPHLSYDLQLKAPRIGNYDTELVKEFFIAFVNNSGITLHINQIRGSNSHHIVEACFKAFSRAMRMATEIDLRRSDSIPSSKGML 198          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_PROM2 (Imidazoleglycerol-phosphate dehydratase OS=Prochlorococcus marinus (strain MIT 9215) GN=hisB PE=3 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 9.673e-70
Identity = 124/198 (62.63%), Postives = 160/198 (80.81%), Query Frame = 1
Query:  163 VDSGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            + S R  E+KR T ET++SV IN+DG+G+++  T +PFLDHML Q++SHGLFD+ ++A GD  IDDHHTNEDVG+A+G A  +ALG+RKGI+RFG F APLDEAL+ V+LD SGRPHL+YDLQ+   R+G YDT+LV+ FF + VN+SG+TLHI Q+ G NSHHI+EA FKAF+RA+R ATE D RR  +IPSSKG+L
Sbjct:    1 MSSLRQSEIKRKTNETDISVFINLDGNGISEIETGVPFLDHMLHQISSHGLFDLKIKAIGDTYIDDHHTNEDVGIALGKAFSKALGERKGISRFGHFFAPLDEALVQVTLDCSGRPHLSYDLQLKAPRIGNYDTELVKEFFIAFVNSSGITLHINQIRGSNSHHIVEACFKAFSRAMRMATEIDLRRSDSIPSSKGML 198          
The following BLAST results are available for this feature:
BLAST of CK939683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HIS7_TRIEI4.639e-7270.10Imidazoleglycerol-phosphate dehydratase OS=Trichod... [more]
HIS7_PROMS1.763e-7164.14Imidazoleglycerol-phosphate dehydratase OS=Prochlo... [more]
HIS7_PROM51.763e-7163.13Imidazoleglycerol-phosphate dehydratase OS=Prochlo... [more]
HIS7_GLOVI1.763e-7164.95Imidazoleglycerol-phosphate dehydratase OS=Gloeoba... [more]
HIS7_PROM01.143e-7064.14Imidazoleglycerol-phosphate dehydratase OS=Prochlo... [more]
HIS7_SYNP63.325e-7066.49Imidazoleglycerol-phosphate dehydratase OS=Synecho... [more]
HIS7_SYNE73.325e-7066.49Imidazoleglycerol-phosphate dehydratase OS=Synecho... [more]
HIS7_PROM94.342e-7063.13Imidazoleglycerol-phosphate dehydratase OS=Prochlo... [more]
HIS7_PROMP5.671e-7063.13Imidazoleglycerol-phosphate dehydratase OS=Prochlo... [more]
HIS7_PROM29.673e-7062.63Imidazoleglycerol-phosphate dehydratase OS=Prochlo... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004747_A02 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIIF_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939683 ID=CK939683; Name=CK939683; organism=Citrus sinensis; type=EST; length=927bp
GGGGTTAAACCAAAAACCAATCTCTCTCGTAAACTTCTCCCCATCTCCAC
ACAATACTGCTCCTCAACGCGCCGCATGAACTCCCTCACAACACCACGCG
CCTCTCTAAACCCAGACGGCGACAGCAAACACAACAACGGGTCCGCCTCA
ACTTCCTCTGCCGTCGATTCTGGTCGAATTGGGGAAGTGAAAAGAGTCAC
GAAAGAGACCAACGTTTCTGTGAAGATTAACGTCGATGGCTCTGGCGTTG
CTGATTCATCCACTTGCATTCCCTTCCTAGATCACATGCTTGATCAACTG
GCTTCGCACGGGCTATTTGATGTGCACGTGAGGGCAACCGGAGACATTCG
CATTGATGATCATCATACCAATGAAGACGTTGGGCTTGCCATTGGCACGG
CATTGCTGCAGGCTCTTGGTGATAGGAAAGGAATTAATCGGTTTGGTGAT
TTTACAGCTCCTCTTGATGAAGCTTTGATTCATGTTTCATTGGATTTATC
TGGACGGCCACATTTAAATTATGATTTGCAAATTCCCACACAGAGAGTTG
GAACTTACGACACTCAATTGGTGGAGCACTTTTTCCAGTCTTTGGTGAAC
ACTTCTGGAATGACTCTTCATATTCGACAGCTTGCTGGAAAAAATTCTCA
TCACATTATTGAGGCAACCTTCAAAGCTTTTGCTAGGGCTCTCCGACAAG
CAACAGAGTATGATCCACGTCGCGGTGGAACTATACCAAGCTCAAAAGGG
GTTCTACTACGATCTTGATACTTCACGGGATTCATGGACTGGGGATGGGG
TTCTTCATGTAGCCTTAAGATTATTGTTAAGAGGGTTATAACTTCATCAC
CGGCTCCTACCATATGCATTAAAAGGTGTTCTTTTGATTTCTGGTGGTTC
ACTCTCATATCATTNNNGGNANNTGTG
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