CK939683

Overview
NameCK939683
Unique NameCK939683
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_SYNJB (Imidazoleglycerol-phosphate dehydratase OS=Synechococcus sp. GN=hisB PE=3 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 9.054e-68
Identity = 126/205 (61.46%), Postives = 158/205 (77.07%), Query Frame = 1
Query:  142 SASTSSAVDSGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            +A  SS +   R   V R T ET+V + +N+DGSG  +  T IPFLDHML QL++HGL D+ ++A GD+ IDDHHTNEDVG+ +G AL QAL DR+GI+RFG F APLDEAL+ V LD SGRPHL+Y L++PT+R+G Y+TQLV  F+Q++VN + +TLHIRQ AG N+HHI+EA+FKAFARALR A E DPRR   IPSSKGVL
Sbjct:    2 TALDSSRLLQPRTASVHRRTGETDVQIHLNLDGSGRHEIDTGIPFLDHMLAQLSTHGLIDLQIKAIGDLHIDDHHTNEDVGITLGQALAQALQDRRGIHRFGHFWAPLDEALVQVVLDFSGRPHLSYGLELPTERIGRYETQLVREFYQAVVNHAQLTLHIRQAAGLNAHHIVEASFKAFARALRMAVERDPRRQEGIPSSKGVL 206          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_SYNJA (Imidazoleglycerol-phosphate dehydratase OS=Synechococcus sp. (strain JA-3-3Ab) GN=hisB PE=3 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.445e-65
Identity = 121/194 (62.37%), Postives = 151/194 (77.84%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            R   V+R T ET+V V++++DG G  +  T IPFLDHML QL++HGL D+ ++A GD+ IDDHHTNEDVG+A+G AL QAL DR+GI RFG F APLDEAL+ V LD SGRPHL+Y L++  +R+G Y+TQLV  F+Q++ N + MTLHIRQ AG N+HHI+EA+FKAFARALR A E DPRR   IPSSKGVL
Sbjct:   13 RTAFVQRRTAETDVQVRLSLDGKGQHEIDTGIPFLDHMLAQLSTHGLIDLQIKAVGDLHIDDHHTNEDVGIALGQALAQALQDRRGIYRFGHFWAPLDEALVQVVLDFSGRPHLSYGLELTVERIGRYETQLVREFYQAVANHAQMTLHIRQAAGLNAHHIVEASFKAFARALRMAVERDPRRQDGIPSSKGVL 206          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_SILST (Imidazoleglycerol-phosphate dehydratase OS=Silicibacter sp. (strain TM1040) GN=hisB PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 4.074e-60
Identity = 108/194 (55.67%), Postives = 142/194 (73.20%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            R  +V R T ET +SV +N+DGSG  D+ T + F DHMLDQL+ H L D+ +RA GD  IDDHHT ED G+A+G AL+QALGD+KGINR+G+   P+D+A +  +LDLS RP L +++ +PTQ++G++DT+LV  FFQ+L    G+TLHI Q+ G NSHHI EA FKA ARALR A E DPR+   +PS+KG L
Sbjct:    2 RTAQVSRSTAETEISVSVNLDGSGTYDNQTGVGFFDHMLDQLSRHSLIDMTIRAKGDYHIDDHHTVEDTGIALGQALVQALGDKKGINRYGECHLPMDDAQVRAALDLSARPFLVWNVDLPTQKIGSFDTELVREFFQALATHGGITLHIDQIHGVNSHHIAEAAFKAVARALRTAVEVDPRKADAVPSTKGAL 195          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_JANSC (Imidazoleglycerol-phosphate dehydratase OS=Jannaschia sp. (strain CCS1) GN=hisB PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 7.682e-59
Identity = 107/194 (55.15%), Postives = 142/194 (73.20%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            R  ++ R T ET++SV+IN+DG+G  D+ T + F DHMLDQLA H L D+ VR  GD+ IDDHH+ EDVG+A+G AL QA+GD++GI R+G+   P+D+A +  +LDLSGRP L +D+++PT ++GT+DT+LV  FFQ+     G+TLH+ Q AG NSHHI EA FKA ARALR A E DPR    IPS+KG L
Sbjct:    2 RTAQITRKTAETDISVEINLDGTGTYDNLTGVGFFDHMLDQLARHALMDMTVRCAGDLHIDDHHSVEDVGIALGQALTQAMGDKRGIRRYGECVLPMDDARVACALDLSGRPFLVWDVEMPTAKIGTFDTELVREFFQAFATHGGITLHLTQAAGVNSHHIAEAAFKATARALRDALEVDPRTADAIPSTKGSL 195          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_DINSH (Imidazoleglycerol-phosphate dehydratase OS=Dinoroseobacter shibae (strain DFL 12) GN=hisB PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 1.003e-58
Identity = 106/194 (54.64%), Postives = 145/194 (74.74%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            R   + R T ET++SV+I++DG+GV D+ T + F DHMLDQL+ H L D+ VR  GD+ IDDHHT EDVG+A+G AL +A+GD++GI R+G    P+D+AL+  +LD+SGRP+L +D+ +PT ++GT+DT+LV  FFQ+L    G+TLH+ +LAG NSHHI EA FK+ ARALR A E DPR+   IPS+KG L
Sbjct:    2 RRATITRKTAETDISVEIDLDGTGVYDNRTGVGFFDHMLDQLSRHALIDMTVRCDGDLHIDDHHTVEDVGIALGQALAEAVGDKRGIVRYGSCLLPMDDALVRAALDISGRPYLVWDVALPTAKIGTFDTELVREFFQALATHGGLTLHVTRLAGINSHHIAEAAFKSVARALRAALETDPRKANAIPSTKGSL 195          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_SILPO (Imidazoleglycerol-phosphate dehydratase OS=Silicibacter pomeroyi GN=hisB PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 6.504e-58
Identity = 107/194 (55.15%), Postives = 138/194 (71.13%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            R   + R T ET +SV IN+DG+G  D+ T + F DHMLDQLA H L D+ + A GD  IDDHHT ED G+A+G AL  ALGD++GI R+G+   P+D+A +  +LDLSGRP L +++ +PT ++GT+DT+LV  FFQ+     G+TLH+ QL G NSHHI EA FKA ARALRQA E DPR+G  IPS+KG L
Sbjct:    2 RRASISRQTAETEISVDINLDGTGAYDNQTGVGFFDHMLDQLARHSLIDMTISAKGDYHIDDHHTVEDTGIALGQALSAALGDKRGIRRYGECHLPMDDAQVRCALDLSGRPFLVWNVDLPTAKIGTFDTELVREFFQAFSTHGGITLHVDQLHGLNSHHIAEAAFKAVARALRQAVESDPRKGDAIPSTKGTL 195          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_ACIAD (Imidazoleglycerol-phosphate dehydratase OS=Acinetobacter sp. (strain ADP1) GN=hisB PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 2.471e-57
Identity = 109/194 (56.19%), Postives = 135/194 (69.59%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            RI EV R T ET + V++N+DGSG    +T +PFLDHM+DQ+  HGLFD+ +   GD+ IDDHHT ED G+ +G A  QALGD+KG+ R+G F APLDE+L  V +DLSGRP L  D+     R+G++D  L   FFQ  VN + MTLHI  L GKNSHH IE+ FKAFARALR A E DPR  G+I S+KG L
Sbjct:    9 RIIEVVRNTNETKIRVRLNLDGSGQGTLNTGVPFLDHMIDQIKRHGLFDIDIHCDGDLEIDDHHTVEDCGITLGQAFAQALGDKKGLRRYGHFYAPLDESLSRVVVDLSGRPGLFMDIPFTRARIGSFDVDLFSEFFQGFVNHALMTLHIDNLKGKNSHHQIESVFKAFARALRMACEIDPRAAGSIASTKGSL 202          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_ACIBS (Imidazoleglycerol-phosphate dehydratase OS=Acinetobacter baumannii (strain SDF) GN=hisB PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 3.228e-57
Identity = 109/194 (56.19%), Postives = 133/194 (68.56%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            RI EV R T ET + V++N+DG+G    +T +PFLDHM+DQ+  HGLFD+ +   GD+ IDDHHT ED G+ +G A  QALGD+KG+ R+G F APLDEAL  V +DLSGRP L  D+     R+GT+D  L   FFQ  VN + MTLHI  L GKNSHH IE+ FKA ARALR A E DPR   TI S+KG L
Sbjct:    9 RISEVVRNTNETKIRVRLNLDGTGQGTLNTGVPFLDHMIDQIKQHGLFDIDIHCDGDLEIDDHHTVEDCGITLGQAFAQALGDKKGLRRYGHFYAPLDEALSRVVVDLSGRPGLFMDIPFTRARIGTFDVDLFSEFFQGFVNHALMTLHIDNLKGKNSHHQIESVFKALARALRMACEIDPRAENTIASTKGSL 202          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_ACIBY (Imidazoleglycerol-phosphate dehydratase OS=Acinetobacter baumannii (strain AYE) GN=hisB PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 4.216e-57
Identity = 109/194 (56.19%), Postives = 133/194 (68.56%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            RI EV R T ET + V++N+DG+G    +T +PFLDHM+DQ+  HGLFD+ +   GD+ IDDHHT ED G+ +G A  QALGD+KG+ R+G F APLDEAL  V +DLSGRP L  D+     R+GT+D  L   FFQ  VN + MTLHI  L GKNSHH IE+ FKA ARALR A E DPR   TI S+KG L
Sbjct:    9 RISEVVRNTNETKIRVRLNLDGTGQGTLNTGVPFLDHMIDQIKRHGLFDIDIHCDGDLEIDDHHTVEDCGITLGQAFAQALGDKKGLRRYGHFYAPLDEALSRVVVDLSGRPGLFMDIPFTRARIGTFDVDLFSEFFQGFVNHALMTLHIDNLKGKNSHHQIESVFKALARALRMACEIDPRAENTIASTKGSL 202          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_PARDP (Imidazoleglycerol-phosphate dehydratase OS=Paracoccus denitrificans (strain Pd 1222) GN=hisB PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 5.506e-57
Identity = 103/194 (53.09%), Postives = 141/194 (72.68%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            R  ++ R T ET + V++++DG+G  D+ T + F DHMLDQLA H L D+ VRA GD+ IDDHHT ED G+AIG AL QALGD++GI R+G F   +D+AL+  +LDLS RP+L +++  P Q++GT+DT+LV  FFQ+L    G+TLH+ ++ G N+HHI EA FKA ARA+R+A E DPR  G +PS+KG L
Sbjct:    2 RRAKITRETAETQIEVELDLDGTGRYDNRTGVGFFDHMLDQLARHSLIDLTVRAKGDLHIDDHHTVEDTGIAIGQALTQALGDKRGIRRYGSFHLAMDDALVRAALDLSARPYLVWNVDFPAQKIGTFDTELVREFFQALSTHGGITLHVDRIHGLNAHHIAEAAFKAVARAMREAVEPDPRMAGVLPSTKGAL 195          
The following BLAST results are available for this feature:
BLAST of CK939683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HIS7_SYNJB9.054e-6861.46Imidazoleglycerol-phosphate dehydratase OS=Synecho... [more]
HIS7_SYNJA1.445e-6562.37Imidazoleglycerol-phosphate dehydratase OS=Synecho... [more]
HIS7_SILST4.074e-6055.67Imidazoleglycerol-phosphate dehydratase OS=Silicib... [more]
HIS7_JANSC7.682e-5955.15Imidazoleglycerol-phosphate dehydratase OS=Jannasc... [more]
HIS7_DINSH1.003e-5854.64Imidazoleglycerol-phosphate dehydratase OS=Dinoros... [more]
HIS7_SILPO6.504e-5855.15Imidazoleglycerol-phosphate dehydratase OS=Silicib... [more]
HIS7_ACIAD2.471e-5756.19Imidazoleglycerol-phosphate dehydratase OS=Acineto... [more]
HIS7_ACIBS3.228e-5756.19Imidazoleglycerol-phosphate dehydratase OS=Acineto... [more]
HIS7_ACIBY4.216e-5756.19Imidazoleglycerol-phosphate dehydratase OS=Acineto... [more]
HIS7_PARDP5.506e-5753.09Imidazoleglycerol-phosphate dehydratase OS=Paracoc... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004747_A02 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIIF_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939683 ID=CK939683; Name=CK939683; organism=Citrus sinensis; type=EST; length=927bp
GGGGTTAAACCAAAAACCAATCTCTCTCGTAAACTTCTCCCCATCTCCAC
ACAATACTGCTCCTCAACGCGCCGCATGAACTCCCTCACAACACCACGCG
CCTCTCTAAACCCAGACGGCGACAGCAAACACAACAACGGGTCCGCCTCA
ACTTCCTCTGCCGTCGATTCTGGTCGAATTGGGGAAGTGAAAAGAGTCAC
GAAAGAGACCAACGTTTCTGTGAAGATTAACGTCGATGGCTCTGGCGTTG
CTGATTCATCCACTTGCATTCCCTTCCTAGATCACATGCTTGATCAACTG
GCTTCGCACGGGCTATTTGATGTGCACGTGAGGGCAACCGGAGACATTCG
CATTGATGATCATCATACCAATGAAGACGTTGGGCTTGCCATTGGCACGG
CATTGCTGCAGGCTCTTGGTGATAGGAAAGGAATTAATCGGTTTGGTGAT
TTTACAGCTCCTCTTGATGAAGCTTTGATTCATGTTTCATTGGATTTATC
TGGACGGCCACATTTAAATTATGATTTGCAAATTCCCACACAGAGAGTTG
GAACTTACGACACTCAATTGGTGGAGCACTTTTTCCAGTCTTTGGTGAAC
ACTTCTGGAATGACTCTTCATATTCGACAGCTTGCTGGAAAAAATTCTCA
TCACATTATTGAGGCAACCTTCAAAGCTTTTGCTAGGGCTCTCCGACAAG
CAACAGAGTATGATCCACGTCGCGGTGGAACTATACCAAGCTCAAAAGGG
GTTCTACTACGATCTTGATACTTCACGGGATTCATGGACTGGGGATGGGG
TTCTTCATGTAGCCTTAAGATTATTGTTAAGAGGGTTATAACTTCATCAC
CGGCTCCTACCATATGCATTAAAAGGTGTTCTTTTGATTTCTGGTGGTTC
ACTCTCATATCATTNNNGGNANNTGTG
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