CK939683

Overview
NameCK939683
Unique NameCK939683
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_STAA8 (Imidazoleglycerol-phosphate dehydratase OS=Staphylococcus aureus (strain NCTC 8325) GN=hisB PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.175e-37
Identity = 83/194 (42.78%), Postives = 126/194 (64.95%), Query Frame = 1
Query:  178 IGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQA-TEYDPRRGGTIPSSKGVL 756
            I + +R T ET +++ I+ D S  +  +T + FL+HML     H    +++ A GDI +DDHH  ED+G+ IG  LL+ + D+K   R+G    P+DE L  V +D+SGRP+L+++  +  ++VGT+DT+LVE FF+++V  + +T HI  + G N+HH IEA FKAF+RAL  A T  D +R   +PSSKGV+
Sbjct:    2 IYQKQRNTAETQLNISISDDQSP-SHINTGVGFLNHMLTLFTFHSGLSLNIEAQGDIDVDDHHVTEDIGIVIGQLLLEMIKDKKHFVRYGTMYIPMDETLARVVVDISGRPYLSFNASLSKEKVGTFDTELVEEFFRAVVINARLTTHIDLIRGGNTHHEIEAIFKAFSRALGIALTATDDQR---VPSSKGVI 191          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_STAA3 (Imidazoleglycerol-phosphate dehydratase OS=Staphylococcus aureus (strain USA300) GN=hisB PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.175e-37
Identity = 83/194 (42.78%), Postives = 126/194 (64.95%), Query Frame = 1
Query:  178 IGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQA-TEYDPRRGGTIPSSKGVL 756
            I + +R T ET +++ I+ D S  +  +T + FL+HML     H    +++ A GDI +DDHH  ED+G+ IG  LL+ + D+K   R+G    P+DE L  V +D+SGRP+L+++  +  ++VGT+DT+LVE FF+++V  + +T HI  + G N+HH IEA FKAF+RAL  A T  D +R   +PSSKGV+
Sbjct:    2 IYQKQRNTAETQLNISISDDQSP-SHINTGVGFLNHMLTLFTFHSGLSLNIEAQGDIDVDDHHVTEDIGIVIGQLLLEMIKDKKHFVRYGTMYIPMDETLARVVVDISGRPYLSFNASLSKEKVGTFDTELVEEFFRAVVINARLTTHIDLIRGGNTHHEIEAIFKAFSRALGIALTATDDQR---VPSSKGVI 191          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_STAA2 (Imidazoleglycerol-phosphate dehydratase OS=Staphylococcus aureus (strain JH1) GN=hisB PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.175e-37
Identity = 83/194 (42.78%), Postives = 126/194 (64.95%), Query Frame = 1
Query:  178 IGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQA-TEYDPRRGGTIPSSKGVL 756
            I + +R T ET +++ I+ D S  +  +T + FL+HML     H    +++ A GDI +DDHH  ED+G+ IG  LL+ + D+K   R+G    P+DE L  V +D+SGRP+L+++  +  ++VGT+DT+LVE FF+++V  + +T HI  + G N+HH IEA FKAF+RAL  A T  D +R   +PSSKGV+
Sbjct:    2 IYQKQRNTAETQLNISISDDQSP-SHINTGVGFLNHMLTLFTFHSGLSLNIEAQGDIDVDDHHVTEDIGIVIGQLLLEMIKDKKHFVRYGTMYIPMDETLARVVVDISGRPYLSFNASLSKEKVGTFDTELVEEFFRAVVINARLTTHIDLIRGGNTHHEIEAIFKAFSRALGIALTATDDQR---VPSSKGVI 191          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_STAA1 (Imidazoleglycerol-phosphate dehydratase OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=hisB PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.175e-37
Identity = 83/194 (42.78%), Postives = 126/194 (64.95%), Query Frame = 1
Query:  178 IGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQA-TEYDPRRGGTIPSSKGVL 756
            I + +R T ET +++ I+ D S  +  +T + FL+HML     H    +++ A GDI +DDHH  ED+G+ IG  LL+ + D+K   R+G    P+DE L  V +D+SGRP+L+++  +  ++VGT+DT+LVE FF+++V  + +T HI  + G N+HH IEA FKAF+RAL  A T  D +R   +PSSKGV+
Sbjct:    2 IYQKQRNTAETQLNISISDDQSP-SHINTGVGFLNHMLTLFTFHSGLSLNIEAQGDIDVDDHHVTEDIGIVIGQLLLEMIKDKKHFVRYGTMYIPMDETLARVVVDISGRPYLSFNASLSKEKVGTFDTELVEEFFRAVVINARLTTHIDLIRGGNTHHEIEAIFKAFSRALGIALTATDDQR---VPSSKGVI 191          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_METS5 (Imidazoleglycerol-phosphate dehydratase OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=hisB PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.175e-37
Identity = 88/198 (44.44%), Postives = 121/198 (61.11%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRAT--GDIR--IDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            R  E  R TKET V VK+ +DG G  +  T +PF DHML  +    LF + V AT  G+ +   DDHH  EDVG+ +G A+  ALGDR+GI RF     P+DEAL+ V++D+SGR + + +L +  +++G   T+ V HFF SL   +G+TLH+R+L G N HHI+EA FK    AL +A      +G  I S+KG L
Sbjct:    3 RYVEKVRETKETKVQVKLELDGEGKVEIRTPVPFFDHMLHSM----LFYMKVNATILGEDKQGYDDHHIVEDVGITLGQAIKDALGDRRGIKRFSSAVIPMDEALVLVAVDVSGRGYASTNLDLKREKIGDLSTENVAHFFWSLATNAGITLHVRKLDGVNEHHIVEAAFKGVGLALGEACSI---QGEGIRSTKGSL 193          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_METM5 (Imidazoleglycerol-phosphate dehydratase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=hisB PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.175e-37
Identity = 82/194 (42.27%), Postives = 119/194 (61.34%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            R  +V R T ET + +++N+DG+G     T I F DH+L   A HG FD+ +   GD+ IDDHHT EDVG+ +G A      ++K I RFG    P+DEA   VS+D+ GRP++  +    T+++G + T+ V HFF+S  N + + LH  ++ G+N HH +EA FKAF  A+  AT  D R+G  I S+KGV+
Sbjct:    2 RAFKVTRDTNETKIHLELNIDGTGKYAIKTGIAFFDHVLSSFAKHGAFDLKLDVLGDLEIDDHHTVEDVGIVLGKAFENM--EKKNIKRFGWAIIPMDEAKATVSIDIGGRPYVVGNYTPNTEKIGNFSTENVVHFFESFSNNAKINLHF-EVTGENEHHKVEALFKAFGVAMDMATHVDERKG--IVSTKGVI 190          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_STAAB (Imidazoleglycerol-phosphate dehydratase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=hisB PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.841e-37
Identity = 83/194 (42.78%), Postives = 126/194 (64.95%), Query Frame = 1
Query:  178 IGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQA-TEYDPRRGGTIPSSKGVL 756
            I + +R T ET +++ I+ D S  +  +T + FL+HML     H    +++ A GDI +DDHH  ED+G+ IG  LL+ + D+K   R+G    P+DE L  V +D+SGRP+L+++  +  ++VGT+DT+LVE FF+++V  + +T HI  + G N+HH IEA FKAF+RAL  A T  D +R   +PSSKGV+
Sbjct:    2 IYQKQRNTAETQLNISISDDQSP-SHINTGVGFLNHMLTLFTFHSGLSLNIEAQGDIDVDDHHVTEDIGIVIGQLLLEMIKDKKHFVRYGTMYIPMDETLARVVVDISGRPYLSFNATLSKEKVGTFDTELVEEFFRAVVINARLTTHIDLIRGGNTHHEIEAIFKAFSRALGIALTATDDQR---VPSSKGVI 191          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_YEAST (Imidazoleglycerol-phosphate dehydratase OS=Saccharomyces cerevisiae GN=HIS3 PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 3.710e-37
Identity = 86/215 (40.00%), Postives = 119/215 (55.35%), Query Frame = 1
Query:  187 VKRVTKETNVSVKINVDG------------------------SGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVLL 759
            VKR+T ET + + I++ G                        S V +  T I FLDHM+  LA H  + + V   GD+ IDDHHT ED G+A+G A  +ALG  +G+ RFG   APLDEAL    +DLS RP+   +L +  ++VG    +++ HF +S    S +TLH+  L GKN HH  E+ FKA A A+R+AT   P     +PS+KGVL+
Sbjct:    8 VKRITNETKIQIAISLKGGPLAIEHSIFPEKEAEAVAEQATQSQVINVHTGIGFLDHMIHALAKHSGWSLIVECIGDLHIDDHHTTEDCGIALGQAFKEALGAVRGVKRFGSGFAPLDEALSRAVVDLSNRPYAVVELGLQREKVGDLSCEMIPHFLESFAEASRITLHVDCLRGKNDHHRSESAFKALAVAIREAT--SPNGTNDVPSTKGVLM 220          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_PROVI (Imidazoleglycerol-phosphate dehydratase OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=hisB PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.710e-37
Identity = 75/187 (40.11%), Postives = 118/187 (63.10%), Query Frame = 1
Query:  193 RVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGV 753
            R T+ET++++ I++DG+G +   + I FLDHML   + H   D+ ++  GD+ +DDHHT ED+ + +G A+ +ALG+++GI R+G    P+DEAL   ++DL GR    +  +     +    T++VEHFF SL  +    +HI  L G+N+HH IEA FKAFA A++ A + +   G  +PS+KGV
Sbjct:   16 RKTQETDITISISLDGTGSSSIESGIGFLDHMLTSFSRHSGIDITLQCQGDLVVDDHHTVEDIAIVLGGAITEALGEKRGIRRYGWAMIPMDEALARCAVDLGGRSCSVFRAEFSRPLIEGLSTEMVEHFFTSLAGSMNANIHIAILEGRNTHHKIEAIFKAFAYAMKDAIKVE---GNAVPSTKGV 199          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_STAS1 (Imidazoleglycerol-phosphate dehydratase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=hisB PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.846e-37
Identity = 81/194 (41.75%), Postives = 121/194 (62.37%), Query Frame = 1
Query:  178 IGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQA-TEYDPRRGGTIPSSKGVL 756
            I + KR T ET +S+ I  D    ++ +T + FL+HML     H    + + A GD  +DDHH  ED+G+ +G  LL  + +RK   R+G    P+DE L    +D+SGRP+L+++  +  ++VGT+D++LVE FF++L+  + +T HI  L G N+HH IEA FK+FARAL+ A +E D      IPSSKGV+
Sbjct:    2 IFQKKRKTAETELSI-ILADDKRTSEINTGVGFLNHMLTLFTFHSGLSIIIEANGDTEVDDHHVTEDIGIVLGQLLLDMIRERKSFQRYGVSYIPMDETLSRAVVDISGRPYLSFNATLSKEKVGTFDSELVEEFFRALIINARLTTHIDLLRGGNTHHEIEAIFKSFARALKMALSEND---NDNIPSSKGVI 191          
The following BLAST results are available for this feature:
BLAST of CK939683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HIS7_STAA82.175e-3742.78Imidazoleglycerol-phosphate dehydratase OS=Staphyl... [more]
HIS7_STAA32.175e-3742.78Imidazoleglycerol-phosphate dehydratase OS=Staphyl... [more]
HIS7_STAA22.175e-3742.78Imidazoleglycerol-phosphate dehydratase OS=Staphyl... [more]
HIS7_STAA12.175e-3742.78Imidazoleglycerol-phosphate dehydratase OS=Staphyl... [more]
HIS7_METS52.175e-3744.44Imidazoleglycerol-phosphate dehydratase OS=Metallo... [more]
HIS7_METM52.175e-3742.27Imidazoleglycerol-phosphate dehydratase OS=Methano... [more]
HIS7_STAAB2.841e-3742.78Imidazoleglycerol-phosphate dehydratase OS=Staphyl... [more]
HIS7_YEAST3.710e-3740.00Imidazoleglycerol-phosphate dehydratase OS=Sacchar... [more]
HIS7_PROVI3.710e-3740.11Imidazoleglycerol-phosphate dehydratase OS=Prosthe... [more]
HIS7_STAS14.846e-3741.75Imidazoleglycerol-phosphate dehydratase OS=Staphyl... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004747_A02 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIIF_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939683 ID=CK939683; Name=CK939683; organism=Citrus sinensis; type=EST; length=927bp
GGGGTTAAACCAAAAACCAATCTCTCTCGTAAACTTCTCCCCATCTCCAC
ACAATACTGCTCCTCAACGCGCCGCATGAACTCCCTCACAACACCACGCG
CCTCTCTAAACCCAGACGGCGACAGCAAACACAACAACGGGTCCGCCTCA
ACTTCCTCTGCCGTCGATTCTGGTCGAATTGGGGAAGTGAAAAGAGTCAC
GAAAGAGACCAACGTTTCTGTGAAGATTAACGTCGATGGCTCTGGCGTTG
CTGATTCATCCACTTGCATTCCCTTCCTAGATCACATGCTTGATCAACTG
GCTTCGCACGGGCTATTTGATGTGCACGTGAGGGCAACCGGAGACATTCG
CATTGATGATCATCATACCAATGAAGACGTTGGGCTTGCCATTGGCACGG
CATTGCTGCAGGCTCTTGGTGATAGGAAAGGAATTAATCGGTTTGGTGAT
TTTACAGCTCCTCTTGATGAAGCTTTGATTCATGTTTCATTGGATTTATC
TGGACGGCCACATTTAAATTATGATTTGCAAATTCCCACACAGAGAGTTG
GAACTTACGACACTCAATTGGTGGAGCACTTTTTCCAGTCTTTGGTGAAC
ACTTCTGGAATGACTCTTCATATTCGACAGCTTGCTGGAAAAAATTCTCA
TCACATTATTGAGGCAACCTTCAAAGCTTTTGCTAGGGCTCTCCGACAAG
CAACAGAGTATGATCCACGTCGCGGTGGAACTATACCAAGCTCAAAAGGG
GTTCTACTACGATCTTGATACTTCACGGGATTCATGGACTGGGGATGGGG
TTCTTCATGTAGCCTTAAGATTATTGTTAAGAGGGTTATAACTTCATCAC
CGGCTCCTACCATATGCATTAAAAGGTGTTCTTTTGATTTCTGGTGGTTC
ACTCTCATATCATTNNNGGNANNTGTG
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