CK939683

Overview
NameCK939683
Unique NameCK939683
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_NEIG1 (Imidazoleglycerol-phosphate dehydratase OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=hisB PE=3 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 7.950e-56
Identity = 110/229 (48.03%), Postives = 145/229 (63.32%), Query Frame = 1
Query:   70 RRMNSLTTPRASLNPDGDSKHNNGSASTSSAVDSGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            R+    T P  +    G ++     A T+SA     +  V R T ET ++V IN+DGSG +   T +PFL+HM+DQ+A HG+ D+ +   GD+ IDDHHT ED+G+ +G A+ QALGD+KGI R+G    PLDEAL  V +DLSGRP L Y+++     +G +D  L E FF  +VN S MTLHI  L+GKN+HH  E  FKAF RALR A E+DPR  G  PS+KG L
Sbjct:   76 RKHRERTVPETAAESTGTAETR--IAETASAAGCRSV-TVNRNTCETQITVSINLDGSGKSRLDTGVPFLEHMIDQIARHGMIDIDISCKGDLHIDDHHTAEDIGITLGQAIRQALGDKKGIRRYGHSYVPLDEALSRVVIDLSGRPGLVYNIEFTRTLIGRFDVDLFEEFFHGIVNHSMMTLHIDNLSGKNAHHQAETVFKAFGRALRMAVEHDPRMAGQTPSTKGTL 301          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_BURXL (Imidazoleglycerol-phosphate dehydratase OS=Burkholderia xenovorans (strain LB400) GN=hisB PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.356e-55
Identity = 105/194 (54.12%), Postives = 133/194 (68.56%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            R+ EV R T ET + VKIN+DG+G    +T +PFLDHMLDQ+A HGLFD+ + A GD+ IDDHHT ED G+ +G A+ +A+GD+KGI R+G    PLDEAL  V +D SGRP L + +     R+GT+D  L   FF+  VN +G+TLHI  L G N+HH +E  FKAF RALR ATE D R  G IPS+KG L
Sbjct:    2 RLAEVVRNTSETQIRVKINLDGTGQQKLATGVPFLDHMLDQIARHGLFDLEIEAHGDLHIDDHHTVEDTGITLGQAVAKAIGDKKGIRRYGHSYVPLDEALSRVVIDFSGRPGLEFHVPFTRARIGTFDVDLSIEFFRGFVNHAGVTLHIDNLRGLNAHHQMETVFKAFGRALRMATELDERAAGQIPSTKGSL 195          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_BURPP (Imidazoleglycerol-phosphate dehydratase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=hisB PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.356e-55
Identity = 106/194 (54.64%), Postives = 133/194 (68.56%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            R+ EV R T ET + VKIN+DG+G    +T +PFLDHMLDQ+A HGLFD+ + A GD+ IDDHHT ED G+ +G A+ +A+GDRKGI R+G    PLDEAL  V +D SGRP L + +     R+GT+D  L   FF+  VN +G+TLHI  L G N+HH +E  FKAF RALR ATE D R  G IPS+KG L
Sbjct:    2 RLAEVVRNTSETQIRVKINLDGTGQQKLATGVPFLDHMLDQIARHGLFDLEIEAHGDLHIDDHHTVEDTGITLGQAVAKAIGDRKGIVRYGHSYVPLDEALSRVVIDFSGRPGLEFHVPFTRARIGTFDVDLSIEFFRGFVNHAGVTLHIDNLRGLNAHHQMETVFKAFGRALRMATELDERAAGQIPSTKGSL 195          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_THISH (Imidazoleglycerol-phosphate dehydratase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=hisB PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 3.021e-55
Identity = 105/196 (53.57%), Postives = 131/196 (66.84%), Query Frame = 1
Query:  169 SGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            S RI EV R T ET + V+IN+DG G     T +PFLDHMLDQ+A HG+ D+ + A GD+ ID HHT ED+G+ +G A+ +ALGD+KGI R+G    PLDEAL  V +D SGRP L Y +  P  R+G +D  L   FFQ  VN + +TLHI  L G+N+HH+ E  FKAF RALR A E DPR  GT PS+KG L
Sbjct:    2 SERIAEVSRDTLETQIRVRINLDGQGKGQFDTGLPFLDHMLDQVARHGVVDLEIVAKGDLHIDAHHTVEDIGITLGQAMARALGDKKGIRRYGHAYVPLDEALSRVVVDFSGRPGLEYHVDYPRARIGDFDVDLFGEFFQGFVNHAAVTLHIDNLRGRNAHHVAETIFKAFGRALRMAAEPDPRMQGTTPSTKGSL 197          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_RALEH (Imidazoleglycerol-phosphate dehydratase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=hisB PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 3.021e-55
Identity = 104/194 (53.61%), Postives = 131/194 (67.53%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            R+ EV R T ET + V +N+DGSG    ++ +PFLDHMLDQ+A HG+FD+ V ATGD  IDDHHT EDVG+ +G A+ +A+GD+KGI R+G    PLDE L  V +D SGRP L + +     RVG++D  L   FF+  VN +G+TLHI  L G N+HH  E  FKAF RALR A E DPR   TIPS+KG L
Sbjct:    2 RVAEVTRNTSETQIRVSLNLDGSGRQKLASGVPFLDHMLDQIARHGMFDLEVEATGDTHIDDHHTVEDVGITLGQAVARAIGDKKGITRYGHSYVPLDECLSRVVIDFSGRPGLEFHVPFTRARVGSFDVDLTIEFFRGFVNHAGVTLHIDNLRGINAHHQCETVFKAFGRALRMAVELDPRAANTIPSTKGTL 195          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_CUPTR (Imidazoleglycerol-phosphate dehydratase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=hisB PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 3.021e-55
Identity = 104/194 (53.61%), Postives = 131/194 (67.53%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            R+ EV R T ET + V +N+DGSG    ++ +PFLDHMLDQ+A HG+FD+ V ATGD  IDDHHT EDVG+ +G A+ +A+GD+KGI R+G    PLDE L  V +D SGRP L + +     RVG++D  L   FF+  VN +G+TLHI  L G N+HH  E  FKAF RALR A E DPR   TIPS+KG L
Sbjct:    2 RVAEVTRNTSETQIRVSLNLDGSGRQKLASGVPFLDHMLDQIARHGMFDLEVEATGDTHIDDHHTVEDVGITLGQAVARAIGDKKGITRYGHSYVPLDECLSRVVIDFSGRPGLEFHVPFTRARVGSFDVDLTIEFFRGFVNHAGVTLHIDNLRGINAHHQCETVFKAFGRALRMAVELDPRAANTIPSTKGTL 195          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_BURP8 (Imidazoleglycerol-phosphate dehydratase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=hisB PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 3.021e-55
Identity = 106/194 (54.64%), Postives = 132/194 (68.04%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            R+ EV R T ET + VKIN+DGSG    +T +PFLDHMLDQ+A HGL D+ + A GD  IDDHHT EDVG+ +G A+ +A+GD+KGI R+G    PLDEAL  V +D SGRP L + +     R+GT+D  L   FF+  VN +G+TLHI  L G N+HH +E  FKAF RALR ATE D R  G IPS+KG L
Sbjct:    2 RLAEVVRNTSETQIRVKINLDGSGQQKLATGVPFLDHMLDQIARHGLIDLDIEAHGDTHIDDHHTVEDVGITLGQAIAKAVGDKKGIRRYGHSYVPLDEALSRVVIDFSGRPGLEFHVPFTRARIGTFDVDLSIEFFRGFVNHAGVTLHIDNLRGLNAHHQMETVFKAFGRALRMATELDERAAGQIPSTKGSL 195          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_RHIME (Imidazoleglycerol-phosphate dehydratase OS=Rhizobium meliloti GN=hisB PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 5.153e-55
Identity = 96/194 (49.48%), Postives = 138/194 (71.13%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            R G+V R T ET +SV +NVDG+GV+  +T + F DHMLDQL+ H L D+ ++A GD+ +DDHHT ED G+AIG AL +ALGDR+GI R+      +DE +   ++D+SGRP L +++   + ++GT+DT+LV  FFQ+L   +G+TLH++ + G N+HH+ E  FK+ AR LR ATE DPR+ G +PS+KG L
Sbjct:    8 RTGQVSRKTNETAISVSVNVDGTGVSKIATGVGFFDHMLDQLSRHSLIDMEIKAEGDLHVDDHHTVEDTGIAIGQALAKALGDRRGITRYASIDLAMDETMTRAAVDVSGRPFLVWNVTFTSPKIGTFDTELVREFFQALAQHAGITLHVQNIYGANNHHVAETCFKSVARVLRTATEIDPRQAGRVPSTKGTL 201          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_POLNA (Imidazoleglycerol-phosphate dehydratase OS=Polaromonas naphthalenivorans (strain CJ2) GN=hisB PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 5.153e-55
Identity = 106/205 (51.71%), Postives = 140/205 (68.29%), Query Frame = 1
Query:  142 SASTSSAVDSGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            + ST++++ + R  EV R T ET ++VK+N+DG+G A  ST I F DHMLDQ+A HGL D+ + A GD+ ID HHT EDVG+ +G A+ QA+GD+KG+ R+G    PLDEAL  V +D SGRP L  ++   +  +GT+D+QL   FFQ  VN + +TLHI  L G+N+HH  E  FKAFARALR A E DPR    IPS+KG L
Sbjct:    2 TTSTAASLPAPRTAEVSRNTAETKITVKLNLDGTGQASLSTGIGFFDHMLDQIARHGLIDLDIHAVGDLHIDGHHTVEDVGITLGQAVAQAVGDKKGLRRYGHAYVPLDEALSRVVVDFSGRPGLVMNVPFKSGMIGTFDSQLAYEFFQGFVNHAFVTLHIDNLKGENAHHQAETVFKAFARALRMALEIDPRAANVIPSTKGSL 206          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_STRGG (Imidazoleglycerol-phosphate dehydratase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=hisB PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 6.730e-55
Identity = 106/197 (53.81%), Postives = 139/197 (70.56%), Query Frame = 1
Query:  169 SGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHL-NYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            S R+G V+R TKET+V V+IN+DG+G  D +T + F DHMLDQL  HGLFD+ V+  GD+ ID HHT ED  LA+G A  QALGD+ GI RFG+ T PLDE+L  V++DLSGRP+L + + +     +GTYDT +  H F+S V  + + LHI    G+N+HHI+E  FKA ARALR A+E+DPR  G +PS+KG L
Sbjct:    2 SPRVGRVERTTKETSVLVEINLDGTGKVDVATGVGFYDHMLDQLGRHGLFDLTVKTEGDLHIDTHHTIEDTALALGAAFKQALGDKVGIYRFGNCTVPLDESLAQVTVDLSGRPYLVHTEPENMAPMIGTYDTTMTRHIFESFVAQAQIALHIHVPYGRNAHHIVECQFKALARALRYASEHDPRAAGILPSTKGAL 198          
The following BLAST results are available for this feature:
BLAST of CK939683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HIS7_NEIG17.950e-5648.03Imidazoleglycerol-phosphate dehydratase OS=Neisser... [more]
HIS7_BURXL1.356e-5554.12Imidazoleglycerol-phosphate dehydratase OS=Burkhol... [more]
HIS7_BURPP1.356e-5554.64Imidazoleglycerol-phosphate dehydratase OS=Burkhol... [more]
HIS7_THISH3.021e-5553.57Imidazoleglycerol-phosphate dehydratase OS=Thioalk... [more]
HIS7_RALEH3.021e-5553.61Imidazoleglycerol-phosphate dehydratase OS=Ralston... [more]
HIS7_CUPTR3.021e-5553.61Imidazoleglycerol-phosphate dehydratase OS=Cupriav... [more]
HIS7_BURP83.021e-5554.64Imidazoleglycerol-phosphate dehydratase OS=Burkhol... [more]
HIS7_RHIME5.153e-5549.48Imidazoleglycerol-phosphate dehydratase OS=Rhizobi... [more]
HIS7_POLNA5.153e-5551.71Imidazoleglycerol-phosphate dehydratase OS=Polarom... [more]
HIS7_STRGG6.730e-5553.81Imidazoleglycerol-phosphate dehydratase OS=Strepto... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004747_A02 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIIF_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939683 ID=CK939683; Name=CK939683; organism=Citrus sinensis; type=EST; length=927bp
GGGGTTAAACCAAAAACCAATCTCTCTCGTAAACTTCTCCCCATCTCCAC
ACAATACTGCTCCTCAACGCGCCGCATGAACTCCCTCACAACACCACGCG
CCTCTCTAAACCCAGACGGCGACAGCAAACACAACAACGGGTCCGCCTCA
ACTTCCTCTGCCGTCGATTCTGGTCGAATTGGGGAAGTGAAAAGAGTCAC
GAAAGAGACCAACGTTTCTGTGAAGATTAACGTCGATGGCTCTGGCGTTG
CTGATTCATCCACTTGCATTCCCTTCCTAGATCACATGCTTGATCAACTG
GCTTCGCACGGGCTATTTGATGTGCACGTGAGGGCAACCGGAGACATTCG
CATTGATGATCATCATACCAATGAAGACGTTGGGCTTGCCATTGGCACGG
CATTGCTGCAGGCTCTTGGTGATAGGAAAGGAATTAATCGGTTTGGTGAT
TTTACAGCTCCTCTTGATGAAGCTTTGATTCATGTTTCATTGGATTTATC
TGGACGGCCACATTTAAATTATGATTTGCAAATTCCCACACAGAGAGTTG
GAACTTACGACACTCAATTGGTGGAGCACTTTTTCCAGTCTTTGGTGAAC
ACTTCTGGAATGACTCTTCATATTCGACAGCTTGCTGGAAAAAATTCTCA
TCACATTATTGAGGCAACCTTCAAAGCTTTTGCTAGGGCTCTCCGACAAG
CAACAGAGTATGATCCACGTCGCGGTGGAACTATACCAAGCTCAAAAGGG
GTTCTACTACGATCTTGATACTTCACGGGATTCATGGACTGGGGATGGGG
TTCTTCATGTAGCCTTAAGATTATTGTTAAGAGGGTTATAACTTCATCAC
CGGCTCCTACCATATGCATTAAAAGGTGTTCTTTTGATTTCTGGTGGTTC
ACTCTCATATCATTNNNGGNANNTGTG
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