CK939683

Overview
NameCK939683
Unique NameCK939683
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_RALEJ (Imidazoleglycerol-phosphate dehydratase OS=Ralstonia eutropha (strain JMP134) GN=hisB PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 6.730e-55
Identity = 103/194 (53.09%), Postives = 131/194 (67.53%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            R+ EV R T ET + V +N+DG+G    ++ +PFLDHMLDQ+A HG+FD+ V ATGD  IDDHHT EDVG+ +G A+ +A+GD+KGI R+G    PLDE L  V +D SGRP L + +     RVG++D  L   FF+  VN +G+TLHI  L G N+HH  E  FKAF RALR A E DPR   TIPS+KG L
Sbjct:    2 RVAEVTRNTSETQIRVSLNLDGTGRQKLASGVPFLDHMLDQIARHGMFDLEVEATGDTHIDDHHTVEDVGITLGQAVAKAIGDKKGITRYGHSYVPLDECLSRVVIDFSGRPGLEFHVPFTRARVGSFDVDLTIEFFRGFVNHAGVTLHIDNLRGINAHHQCETVFKAFGRALRMAVELDPRAANTIPSTKGTL 195          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_RHISN (Imidazoleglycerol-phosphate dehydratase OS=Rhizobium sp. (strain NGR234) GN=hisB PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 8.790e-55
Identity = 96/198 (48.48%), Postives = 138/198 (69.70%), Query Frame = 1
Query:  163 VDSGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            V   R G+V R T ET VSV +N+DG+GV+  +T + F DHMLDQLA H L D+ ++  GD+ +DDHHT ED G+AIG A+ +ALGDR+GI R+      +DE +   ++D+SGRP L +++   + ++GT+DT+LV  FFQ+L   +G+TLH++ + G N+HH+ E  FK+ AR LR ATE DPR+ G +PS+KG L
Sbjct:    4 VTLSRTGQVSRKTNETAVSVSVNIDGTGVSKIATGVGFFDHMLDQLARHSLIDMEIKTEGDLHVDDHHTVEDTGIAIGQAIAKALGDRRGITRYASLDLAMDETMTRAAVDVSGRPFLVWNVTFSSPKIGTFDTELVREFFQALAQHAGITLHVQNIYGANNHHVAETCFKSVARVLRTATEIDPRQAGRVPSTKGTL 201          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_RHIE6 (Imidazoleglycerol-phosphate dehydratase OS=Rhizobium etli (strain CIAT 652) GN=hisB PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 8.790e-55
Identity = 101/197 (51.27%), Postives = 136/197 (69.04%), Query Frame = 1
Query:  169 SGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVLL 759
            + R G V R T ET++SV +N+DG+G +  ST + F DHMLDQLA H L D+ + A GD+ IDDHHT ED G+AIG A+ +ALGDR+GI R+      +DE +   ++DLSGRP L +++     ++GT+DT+LV  FFQ+L   +G+TLHI    G N+HHI E  FKA ARALR ATE DPR+ G +PS+KG L+
Sbjct:    6 ASRTGSVSRKTNETSISVSVNLDGTGKSKISTGVGFFDHMLDQLARHSLIDMEIDAKGDLHIDDHHTVEDTGIAIGQAISKALGDRRGITRYASIDLAMDETMTKAAVDLSGRPFLVWNVAFSAPKIGTFDTELVREFFQALAQNAGITLHILNHYGANNHHIAETCFKAVARALRTATEIDPRQAGRVPSTKGTLV 202          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_RALME (Imidazoleglycerol-phosphate dehydratase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=hisB PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.148e-54
Identity = 102/194 (52.58%), Postives = 131/194 (67.53%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            R+ EV R T ET + V +N+DG+G    ++ +PFLDHMLDQ+A HG+FD+ V ATGD  IDDHHT EDVG+ +G A+ +A+GD+KGI R+G    PLDE L  V +D SGRP L + +     RVG++D  L   FF+  VN +G+TLHI  + G N+HH  E  FKAF RALR A E DPR   TIPS+KG L
Sbjct:    2 RVAEVTRNTSETQIRVSLNLDGTGRQKLASGVPFLDHMLDQIARHGMFDLEVEATGDTHIDDHHTVEDVGITLGQAVARAIGDKKGITRYGHSYVPLDECLSRVVIDFSGRPGLEFHVPFTRARVGSFDVDLTIEFFRGFVNHAGVTLHIDNIRGINAHHQCETVFKAFGRALRMAVELDPRAANTIPSTKGTL 195          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_RHOS5 (Imidazoleglycerol-phosphate dehydratase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=hisB PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.499e-54
Identity = 101/194 (52.06%), Postives = 137/194 (70.62%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            R  ++ R T ET +SVK+++DG+G  D  T + F DHM+DQLA H L D+ +R  GD+ IDDHHT ED G+A+G AL QALGD++GI R+G F   +D+AL+  +LDLSGRP+L  +L  P  ++G++DT+LV  FFQ+L    G+TLH+  + G N HHI EA FKA AR+LR+A E DPR    IPS+KG+L
Sbjct:    2 RQADITRKTAETAISVKVDLDGTGRYDIRTGVGFFDHMMDQLARHSLIDITLRCEGDLHIDDHHTVEDCGIALGQALTQALGDKRGIRRYGSFHLAMDDALVRCALDLSGRPYLVCNLPFPAAKIGSFDTELVREFFQALSTHGGITLHLDLIHGLNGHHIAEAAFKAVARSLREAVEPDPRAASAIPSTKGML 195          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_BURS3 (Imidazoleglycerol-phosphate dehydratase OS=Burkholderia sp. (strain 383) GN=hisB PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.499e-54
Identity = 105/194 (54.12%), Postives = 131/194 (67.53%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            R+ EV R T ET + VK+N+DG+G    +T +PFLDHMLDQ+A HGL D+ V A GD  IDDHHT EDVG+ +G A+ +A+GDRKGI R+G    PLDEAL  V +D SGRP L + +     R+GT+D  L   FF+  VN +G+TLHI  L G N+HH +E  FKAF RALR A E D R  G IPS+KG L
Sbjct:    2 RVAEVVRNTSETQIRVKLNLDGTGQQKLATGVPFLDHMLDQIARHGLVDLEVEAHGDTHIDDHHTVEDVGITLGQAVAKAIGDRKGIRRYGHSYVPLDEALSRVVIDFSGRPGLEFHVPFTRARIGTFDVDLSIEFFRGFVNHAGVTLHIDNLRGINAHHQLETVFKAFGRALRAAVELDERAAGQIPSTKGSL 195          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_AZOSE (Imidazoleglycerol-phosphate dehydratase OS=Azoarcus sp. (strain EbN1) GN=hisB PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.499e-54
Identity = 104/194 (53.61%), Postives = 131/194 (67.53%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            R  EV R T ET ++ ++++DGSG A  +T +PFLDHMLDQ+A HG FD+ +RA GD  IDDHHT EDVG+ +G A  +ALGD++GI R+G    PLDEAL  V +D SGRP L+Y +     R+G++D  L   FFQ  VN +G+TLHI  L G N+HH  E  FKAF RALR A E D R  G IPS+KG L
Sbjct:    2 RQAEVTRDTLETRITARVDLDGSGKAAFATGVPFLDHMLDQIARHGAFDLDIRAEGDTHIDDHHTVEDVGITLGQAFARALGDKRGIRRYGHAYVPLDEALSRVVVDFSGRPGLHYFVSYTRARIGSFDVDLAREFFQGFVNHAGVTLHIDSLRGDNAHHQCETIFKAFGRALRMAAERDERAAGAIPSTKGAL 195          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_BURP1 (Imidazoleglycerol-phosphate dehydratase OS=Burkholderia pseudomallei (strain 1710b) GN=hisB PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.958e-54
Identity = 104/194 (53.61%), Postives = 132/194 (68.04%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            R+ +V R T ET +SVKI++DG+G    +T +PFLDHMLDQ+A HGL D+ + A GD  IDDHHT EDVG+ +G A+ +A+GDRKGI R+G    PLDEAL  V +D SGRP L + +     R+GT+D  L   FF+  VN +G+TLHI  L G N+HH +E  FKAF RALR A E D R  G IPS+KG L
Sbjct:    2 RVAQVVRNTSETQISVKIDLDGTGRQKLATGVPFLDHMLDQIARHGLVDLDIEANGDTHIDDHHTVEDVGITLGQAVAKAVGDRKGIRRYGHSYVPLDEALSRVVIDFSGRPGLEFHVPFTRARIGTFDVDLSIEFFRGFVNHAGVTLHIDNLRGVNAHHQLETVFKAFGRALRMAVELDERAAGQIPSTKGSL 195          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_RHIEC (Imidazoleglycerol-phosphate dehydratase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=hisB PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.557e-54
Identity = 99/197 (50.25%), Postives = 136/197 (69.04%), Query Frame = 1
Query:  169 SGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVLL 759
            + R G V R T ET++SV +N+DG+G +  ST + F DHMLDQL+ H L D+ + A GD+ IDDHHT ED G+AIG A+ +ALGDR+GI R+      +DE +   ++DLSGRP L +++     ++GT+DT+LV  FFQ+L   +G+TLH+    G N+HHI E  FKA ARALR ATE DPR+ G +PS+KG L+
Sbjct:    6 ASRTGSVARKTNETSISVSVNLDGTGKSKISTGVGFFDHMLDQLSRHSLIDMEIEAKGDLHIDDHHTVEDTGIAIGQAISKALGDRRGITRYASIDLAMDETMTKAAVDLSGRPFLVWNVAFSAPKIGTFDTELVREFFQALAQNAGITLHLLNHYGANNHHIAETCFKAVARALRTATEIDPRQAGRVPSTKGTLV 202          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_RALSO (Imidazoleglycerol-phosphate dehydratase OS=Ralstonia solanacearum GN=hisB PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.557e-54
Identity = 105/194 (54.12%), Postives = 132/194 (68.04%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            R  EV R T ET + V +++DG+G    +T +PFLDHMLDQ+A HG+ D+ V ATGD  IDDHHT EDVG+ +G A+ +A+GD+KGI R+G    PLDEAL  V +D SGRP L + +     RVG++D  L   FF+  VN +G+TLHI  L G N+HH IE  FKAF RALR A E DPR  GTIPS+KG L
Sbjct:    3 RRAEVTRNTSETQIRVALDLDGTGKQTLNTGVPFLDHMLDQIARHGMVDLDVTATGDTHIDDHHTVEDVGITLGQAVAKAIGDKKGIVRYGHSYVPLDEALSRVVIDFSGRPGLEFHVPFTRARVGSFDVDLSIEFFRGFVNHAGVTLHIDNLRGVNAHHQIETVFKAFGRALRMAVEIDPRAAGTIPSTKGAL 196          
The following BLAST results are available for this feature:
BLAST of CK939683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HIS7_RALEJ6.730e-5553.09Imidazoleglycerol-phosphate dehydratase OS=Ralston... [more]
HIS7_RHISN8.790e-5548.48Imidazoleglycerol-phosphate dehydratase OS=Rhizobi... [more]
HIS7_RHIE68.790e-5551.27Imidazoleglycerol-phosphate dehydratase OS=Rhizobi... [more]
HIS7_RALME1.148e-5452.58Imidazoleglycerol-phosphate dehydratase OS=Ralston... [more]
HIS7_RHOS51.499e-5452.06Imidazoleglycerol-phosphate dehydratase OS=Rhodoba... [more]
HIS7_BURS31.499e-5454.12Imidazoleglycerol-phosphate dehydratase OS=Burkhol... [more]
HIS7_AZOSE1.499e-5453.61Imidazoleglycerol-phosphate dehydratase OS=Azoarcu... [more]
HIS7_BURP11.958e-5453.61Imidazoleglycerol-phosphate dehydratase OS=Burkhol... [more]
HIS7_RHIEC2.557e-5450.25Imidazoleglycerol-phosphate dehydratase OS=Rhizobi... [more]
HIS7_RALSO2.557e-5454.12Imidazoleglycerol-phosphate dehydratase OS=Ralston... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004747_A02 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIIF_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939683 ID=CK939683; Name=CK939683; organism=Citrus sinensis; type=EST; length=927bp
GGGGTTAAACCAAAAACCAATCTCTCTCGTAAACTTCTCCCCATCTCCAC
ACAATACTGCTCCTCAACGCGCCGCATGAACTCCCTCACAACACCACGCG
CCTCTCTAAACCCAGACGGCGACAGCAAACACAACAACGGGTCCGCCTCA
ACTTCCTCTGCCGTCGATTCTGGTCGAATTGGGGAAGTGAAAAGAGTCAC
GAAAGAGACCAACGTTTCTGTGAAGATTAACGTCGATGGCTCTGGCGTTG
CTGATTCATCCACTTGCATTCCCTTCCTAGATCACATGCTTGATCAACTG
GCTTCGCACGGGCTATTTGATGTGCACGTGAGGGCAACCGGAGACATTCG
CATTGATGATCATCATACCAATGAAGACGTTGGGCTTGCCATTGGCACGG
CATTGCTGCAGGCTCTTGGTGATAGGAAAGGAATTAATCGGTTTGGTGAT
TTTACAGCTCCTCTTGATGAAGCTTTGATTCATGTTTCATTGGATTTATC
TGGACGGCCACATTTAAATTATGATTTGCAAATTCCCACACAGAGAGTTG
GAACTTACGACACTCAATTGGTGGAGCACTTTTTCCAGTCTTTGGTGAAC
ACTTCTGGAATGACTCTTCATATTCGACAGCTTGCTGGAAAAAATTCTCA
TCACATTATTGAGGCAACCTTCAAAGCTTTTGCTAGGGCTCTCCGACAAG
CAACAGAGTATGATCCACGTCGCGGTGGAACTATACCAAGCTCAAAAGGG
GTTCTACTACGATCTTGATACTTCACGGGATTCATGGACTGGGGATGGGG
TTCTTCATGTAGCCTTAAGATTATTGTTAAGAGGGTTATAACTTCATCAC
CGGCTCCTACCATATGCATTAAAAGGTGTTCTTTTGATTTCTGGTGGTTC
ACTCTCATATCATTNNNGGNANNTGTG
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