CK939683

Overview
NameCK939683
Unique NameCK939683
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_NITOC (Imidazoleglycerol-phosphate dehydratase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=hisB PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.557e-54
Identity = 105/190 (55.26%), Postives = 132/190 (69.47%), Query Frame = 1
Query:  187 VKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            V R T ET V V +N+ G G   + T +PFL+HML Q+A HGL D+ V+A+GD+ ID HHT ED+G+ +G AL QALGD+ G+ R+G    PLDEAL  V LDLSGRP L+Y +  P  R+G +D  L + FFQ LVN + MTLHI  L G+N+HHI E  FKAF RALR A EYDPRR G + S+KG+L
Sbjct:    8 VYRETLETRVEVDLNLSGEGHFTAETGLPFLEHMLAQVARHGLLDLTVKASGDLHIDAHHTVEDIGITLGQALQQALGDKTGLQRYGYAYVPLDEALSRVVLDLSGRPSLHYRVNYPRARIGDFDVDLFQEFFQGLVNHAAMTLHIDNLHGRNAHHIAETIFKAFGRALRVAVEYDPRRKGQLASTKGML 197          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_RALPJ (Imidazoleglycerol-phosphate dehydratase OS=Ralstonia pickettii (strain 12J) GN=hisB PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 3.340e-54
Identity = 105/194 (54.12%), Postives = 131/194 (67.53%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            R  EV R T ET + V +++DG+G    +T +PFLDHMLDQ+A HG+ D+ V ATGD  IDDHHT EDVG+ +G A+ +A+GD+KGI R+G    PLDEAL  V +D SGRP L + +     RVG +D  L   FF+  VN +G+TLHI  L G N+HH IE  FKAF RALR A E DPR  GTIPS+KG L
Sbjct:    3 RRAEVTRNTSETQIRVALDLDGTGKQTLNTGVPFLDHMLDQIARHGMVDLDVSATGDTHIDDHHTVEDVGITLGQAVAKAIGDKKGIVRYGHSYVPLDEALSRVVIDFSGRPGLEFHVPFTRARVGNFDVDLSIEFFRGFVNHAGVTLHIDNLRGVNAHHQIETVFKAFGRALRMAVEIDPRAAGTIPSTKGAL 196          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_METPP (Imidazoleglycerol-phosphate dehydratase OS=Methylibium petroleiphilum (strain PM1) GN=hisB PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 3.340e-54
Identity = 105/197 (53.30%), Postives = 133/197 (67.51%), Query Frame = 1
Query:  166 DSGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            +  R+ EV+R T ET + V++++DG+GVA  +T I F DHMLDQLA HGL D+ + A GD+ ID HHT EDVG+ +G A  +A+GD+KG+ R+G    PLDEAL  V +D SGRP L+  +      +G  DTQLV  FFQ  VN +G+TLHI  L G N+HH  E  FKAFARALR A E DPR  G IPS+KG L
Sbjct:    3 EPNRVAEVRRDTAETKIRVRVDLDGTGVARLATGIGFFDHMLDQLARHGLVDLEIEADGDLHIDGHHTVEDVGITLGQAFAKAVGDKKGLRRYGHAYVPLDEALSRVVVDFSGRPGLHMRVPFKAGMIGALDTQLVYEFFQGFVNHAGVTLHIDNLHGDNAHHQCETVFKAFARALRMALERDPRMAGVIPSTKGSL 199          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_BURPS (Imidazoleglycerol-phosphate dehydratase OS=Burkholderia pseudomallei GN=hisB PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 3.340e-54
Identity = 104/194 (53.61%), Postives = 132/194 (68.04%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            R+ +V R T ET +SVKI++DG+G    +T +PFLDHMLDQ+A HGL D+ + A GD  IDDHHT EDVG+ +G A+ +A+GDRKGI R+G    PLDEAL  V +D SGRP L + +     R+GT+D  L   FF+  VN +G+TLHI  L G N+HH +E  FKAF RALR A E D R  G IPS+KG L
Sbjct:    2 RVAQVVRNTSETQISVKIDLDGTGRQKLATGVPFLDHMLDQIARHGLVDLDIEAHGDTHIDDHHTVEDVGITLGQAVAKAVGDRKGIRRYGHSYVPLDEALSRVVIDFSGRPGLEFHVPFTRARIGTFDVDLSIEFFRGFVNHAGVTLHIDNLRGVNAHHQLETVFKAFGRALRMAVELDERAAGQIPSTKGSL 195          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_BURP6 (Imidazoleglycerol-phosphate dehydratase OS=Burkholderia pseudomallei (strain 668) GN=hisB PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 3.340e-54
Identity = 104/194 (53.61%), Postives = 132/194 (68.04%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            R+ +V R T ET +SVKI++DG+G    +T +PFLDHMLDQ+A HGL D+ + A GD  IDDHHT EDVG+ +G A+ +A+GDRKGI R+G    PLDEAL  V +D SGRP L + +     R+GT+D  L   FF+  VN +G+TLHI  L G N+HH +E  FKAF RALR A E D R  G IPS+KG L
Sbjct:    2 RVAQVVRNTSETQISVKIDLDGTGRQKLATGVPFLDHMLDQIARHGLVDLDIEAHGDTHIDDHHTVEDVGITLGQAVAKAVGDRKGIRRYGHSYVPLDEALSRVVIDFSGRPGLEFHVPFTRARIGTFDVDLSIEFFRGFVNHAGVTLHIDNLRGVNAHHQLETVFKAFGRALRMAVELDERAAGQIPSTKGSL 195          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_BURP0 (Imidazoleglycerol-phosphate dehydratase OS=Burkholderia pseudomallei (strain 1106a) GN=hisB PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 3.340e-54
Identity = 104/194 (53.61%), Postives = 132/194 (68.04%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            R+ +V R T ET +SVKI++DG+G    +T +PFLDHMLDQ+A HGL D+ + A GD  IDDHHT EDVG+ +G A+ +A+GDRKGI R+G    PLDEAL  V +D SGRP L + +     R+GT+D  L   FF+  VN +G+TLHI  L G N+HH +E  FKAF RALR A E D R  G IPS+KG L
Sbjct:    2 RVAQVVRNTSETQISVKIDLDGTGRQKLATGVPFLDHMLDQIARHGLVDLDIEAHGDTHIDDHHTVEDVGITLGQAVAKAVGDRKGIRRYGHSYVPLDEALSRVVIDFSGRPGLEFHVPFTRARIGTFDVDLSIEFFRGFVNHAGVTLHIDNLRGVNAHHQLETVFKAFGRALRMAVELDERAAGQIPSTKGSL 195          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_BURMS (Imidazoleglycerol-phosphate dehydratase OS=Burkholderia mallei (strain SAVP1) GN=hisB PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 3.340e-54
Identity = 104/194 (53.61%), Postives = 132/194 (68.04%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            R+ +V R T ET +SVKI++DG+G    +T +PFLDHMLDQ+A HGL D+ + A GD  IDDHHT EDVG+ +G A+ +A+GDRKGI R+G    PLDEAL  V +D SGRP L + +     R+GT+D  L   FF+  VN +G+TLHI  L G N+HH +E  FKAF RALR A E D R  G IPS+KG L
Sbjct:    2 RVAQVVRNTSETQISVKIDLDGTGRQKLATGVPFLDHMLDQIARHGLVDLDIEAHGDTHIDDHHTVEDVGITLGQAVAKAVGDRKGIRRYGHSYVPLDEALSRVVIDFSGRPGLEFHVPFTRARIGTFDVDLSIEFFRGFVNHAGVTLHIDNLRGVNAHHQLETVFKAFGRALRMAVELDERAAGQIPSTKGSL 195          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_BURMA (Imidazoleglycerol-phosphate dehydratase OS=Burkholderia mallei GN=hisB PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 3.340e-54
Identity = 104/194 (53.61%), Postives = 132/194 (68.04%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            R+ +V R T ET +SVKI++DG+G    +T +PFLDHMLDQ+A HGL D+ + A GD  IDDHHT EDVG+ +G A+ +A+GDRKGI R+G    PLDEAL  V +D SGRP L + +     R+GT+D  L   FF+  VN +G+TLHI  L G N+HH +E  FKAF RALR A E D R  G IPS+KG L
Sbjct:    2 RVAQVVRNTSETQISVKIDLDGTGRQKLATGVPFLDHMLDQIARHGLVDLDIEAHGDTHIDDHHTVEDVGITLGQAVAKAVGDRKGIRRYGHSYVPLDEALSRVVIDFSGRPGLEFHVPFTRARIGTFDVDLSIEFFRGFVNHAGVTLHIDNLRGVNAHHQLETVFKAFGRALRMAVELDERAAGQIPSTKGSL 195          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_BURM9 (Imidazoleglycerol-phosphate dehydratase OS=Burkholderia mallei (strain NCTC 10229) GN=hisB PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 3.340e-54
Identity = 104/194 (53.61%), Postives = 132/194 (68.04%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            R+ +V R T ET +SVKI++DG+G    +T +PFLDHMLDQ+A HGL D+ + A GD  IDDHHT EDVG+ +G A+ +A+GDRKGI R+G    PLDEAL  V +D SGRP L + +     R+GT+D  L   FF+  VN +G+TLHI  L G N+HH +E  FKAF RALR A E D R  G IPS+KG L
Sbjct:    2 RVAQVVRNTSETQISVKIDLDGTGRQKLATGVPFLDHMLDQIARHGLVDLDIEAHGDTHIDDHHTVEDVGITLGQAVAKAVGDRKGIRRYGHSYVPLDEALSRVVIDFSGRPGLEFHVPFTRARIGTFDVDLSIEFFRGFVNHAGVTLHIDNLRGVNAHHQLETVFKAFGRALRMAVELDERAAGQIPSTKGSL 195          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_BURM7 (Imidazoleglycerol-phosphate dehydratase OS=Burkholderia mallei (strain NCTC 10247) GN=hisB PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 3.340e-54
Identity = 104/194 (53.61%), Postives = 132/194 (68.04%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            R+ +V R T ET +SVKI++DG+G    +T +PFLDHMLDQ+A HGL D+ + A GD  IDDHHT EDVG+ +G A+ +A+GDRKGI R+G    PLDEAL  V +D SGRP L + +     R+GT+D  L   FF+  VN +G+TLHI  L G N+HH +E  FKAF RALR A E D R  G IPS+KG L
Sbjct:    2 RVAQVVRNTSETQISVKIDLDGTGRQKLATGVPFLDHMLDQIARHGLVDLDIEAHGDTHIDDHHTVEDVGITLGQAVAKAVGDRKGIRRYGHSYVPLDEALSRVVIDFSGRPGLEFHVPFTRARIGTFDVDLSIEFFRGFVNHAGVTLHIDNLRGVNAHHQLETVFKAFGRALRMAVELDERAAGQIPSTKGSL 195          
The following BLAST results are available for this feature:
BLAST of CK939683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HIS7_NITOC2.557e-5455.26Imidazoleglycerol-phosphate dehydratase OS=Nitroso... [more]
HIS7_RALPJ3.340e-5454.12Imidazoleglycerol-phosphate dehydratase OS=Ralston... [more]
HIS7_METPP3.340e-5453.30Imidazoleglycerol-phosphate dehydratase OS=Methyli... [more]
HIS7_BURPS3.340e-5453.61Imidazoleglycerol-phosphate dehydratase OS=Burkhol... [more]
HIS7_BURP63.340e-5453.61Imidazoleglycerol-phosphate dehydratase OS=Burkhol... [more]
HIS7_BURP03.340e-5453.61Imidazoleglycerol-phosphate dehydratase OS=Burkhol... [more]
HIS7_BURMS3.340e-5453.61Imidazoleglycerol-phosphate dehydratase OS=Burkhol... [more]
HIS7_BURMA3.340e-5453.61Imidazoleglycerol-phosphate dehydratase OS=Burkhol... [more]
HIS7_BURM93.340e-5453.61Imidazoleglycerol-phosphate dehydratase OS=Burkhol... [more]
HIS7_BURM73.340e-5453.61Imidazoleglycerol-phosphate dehydratase OS=Burkhol... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004747_A02 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIIF_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939683 ID=CK939683; Name=CK939683; organism=Citrus sinensis; type=EST; length=927bp
GGGGTTAAACCAAAAACCAATCTCTCTCGTAAACTTCTCCCCATCTCCAC
ACAATACTGCTCCTCAACGCGCCGCATGAACTCCCTCACAACACCACGCG
CCTCTCTAAACCCAGACGGCGACAGCAAACACAACAACGGGTCCGCCTCA
ACTTCCTCTGCCGTCGATTCTGGTCGAATTGGGGAAGTGAAAAGAGTCAC
GAAAGAGACCAACGTTTCTGTGAAGATTAACGTCGATGGCTCTGGCGTTG
CTGATTCATCCACTTGCATTCCCTTCCTAGATCACATGCTTGATCAACTG
GCTTCGCACGGGCTATTTGATGTGCACGTGAGGGCAACCGGAGACATTCG
CATTGATGATCATCATACCAATGAAGACGTTGGGCTTGCCATTGGCACGG
CATTGCTGCAGGCTCTTGGTGATAGGAAAGGAATTAATCGGTTTGGTGAT
TTTACAGCTCCTCTTGATGAAGCTTTGATTCATGTTTCATTGGATTTATC
TGGACGGCCACATTTAAATTATGATTTGCAAATTCCCACACAGAGAGTTG
GAACTTACGACACTCAATTGGTGGAGCACTTTTTCCAGTCTTTGGTGAAC
ACTTCTGGAATGACTCTTCATATTCGACAGCTTGCTGGAAAAAATTCTCA
TCACATTATTGAGGCAACCTTCAAAGCTTTTGCTAGGGCTCTCCGACAAG
CAACAGAGTATGATCCACGTCGCGGTGGAACTATACCAAGCTCAAAAGGG
GTTCTACTACGATCTTGATACTTCACGGGATTCATGGACTGGGGATGGGG
TTCTTCATGTAGCCTTAAGATTATTGTTAAGAGGGTTATAACTTCATCAC
CGGCTCCTACCATATGCATTAAAAGGTGTTCTTTTGATTTCTGGTGGTTC
ACTCTCATATCATTNNNGGNANNTGTG
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