CK939683

Overview
NameCK939683
Unique NameCK939683
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_ACIAC (Imidazoleglycerol-phosphate dehydratase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=hisB PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 5.697e-54
Identity = 107/201 (53.23%), Postives = 134/201 (66.67%), Query Frame = 1
Query:  154 SSAVDSGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            S+A +  RI EV R T ET + V++N+DG+G A  S+ I F DHMLDQ+A HGL D+ +   GD+ ID HHT EDVG+ +G A  +A+GD+KGI R+G    PLDEAL  V +D SGRP L+ D++     +G  DTQLV  FFQ  VN +G+TLHI  L G N+HH  E  FKAFARALR A   DPR  G IPS+KG L
Sbjct:    9 STASEGDRIAEVARNTAETRIRVRVNLDGTGNARLSSGIGFFDHMLDQIARHGLIDLDIECEGDLHIDGHHTVEDVGITLGQAFARAVGDKKGIRRYGHAYVPLDEALSRVVVDFSGRPGLHMDVKFTAGSIGQLDTQLVYEFFQGFVNHAGVTLHIDNLKGFNAHHQCETIFKAFARALRAALARDPRSAGVIPSTKGSL 209          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_RHIL3 (Imidazoleglycerol-phosphate dehydratase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=hisB PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 7.441e-54
Identity = 99/197 (50.25%), Postives = 135/197 (68.53%), Query Frame = 1
Query:  169 SGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVLL 759
            + R G V R T ET++SV +N+DG+G +  ST + F DHMLDQL+ H L D+ + A GD+ IDDHHT ED G+AIG A+ +ALGDR+GI R+      +DE +   ++DLSGRP L +++     ++GT+DT+LV  FF +L   +G+TLHI    G N+HHI E  FKA ARALR ATE DPR+ G +PS+KG L+
Sbjct:    6 ASRTGSVSRKTNETSISVSVNLDGTGKSTISTGVGFFDHMLDQLSRHSLIDMEIDAKGDLHIDDHHTVEDTGIAIGQAISKALGDRRGITRYASIDLAMDETMTKAAVDLSGRPFLVWNVAFSAPKIGTFDTELVREFFHALAQNAGITLHILNHYGANNHHIAETCFKAVARALRTATEIDPRQAGRVPSTKGTLV 202          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_BURCH (Imidazoleglycerol-phosphate dehydratase OS=Burkholderia cenocepacia (strain HI2424) GN=hisB PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 7.441e-54
Identity = 104/194 (53.61%), Postives = 131/194 (67.53%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            R+ EV R T ET + VK+++DG+G    +T +PFLDHMLDQ+A HGL D+ V A GD  IDDHHT EDVG+ +G A+ +A+GDRKGI R+G    PLDEAL  V +D SGRP L + +     R+GT+D  L   FF+  VN +G+TLHI  L G N+HH +E  FKAF RALR A E D R  G IPS+KG L
Sbjct:    2 RVAEVVRNTSETQIRVKLDLDGTGRQKLATGVPFLDHMLDQIARHGLVDLEVEAHGDTHIDDHHTVEDVGITLGQAVAKAIGDRKGIRRYGHSYVPLDEALSRVVIDFSGRPGLEFHVPFTRARIGTFDVDLSIEFFRGFVNHAGVTLHIDNLRGINAHHQLETVFKAFGRALRAAVELDERAAGQIPSTKGSL 195          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_BURCA (Imidazoleglycerol-phosphate dehydratase OS=Burkholderia cenocepacia (strain AU 1054) GN=hisB PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 7.441e-54
Identity = 104/194 (53.61%), Postives = 131/194 (67.53%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            R+ EV R T ET + VK+++DG+G    +T +PFLDHMLDQ+A HGL D+ V A GD  IDDHHT EDVG+ +G A+ +A+GDRKGI R+G    PLDEAL  V +D SGRP L + +     R+GT+D  L   FF+  VN +G+TLHI  L G N+HH +E  FKAF RALR A E D R  G IPS+KG L
Sbjct:    2 RVAEVVRNTSETQIRVKLDLDGTGRQKLATGVPFLDHMLDQIARHGLVDLEVEAHGDTHIDDHHTVEDVGITLGQAVAKAIGDRKGIRRYGHSYVPLDEALSRVVIDFSGRPGLEFHVPFTRARIGTFDVDLSIEFFRGFVNHAGVTLHIDNLRGINAHHQLETVFKAFGRALRAAVELDERAAGQIPSTKGSL 195          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_VEREI (Imidazoleglycerol-phosphate dehydratase OS=Verminephrobacter eiseniae (strain EF01-2) GN=hisB PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.269e-53
Identity = 111/209 (53.11%), Postives = 137/209 (65.55%), Query Frame = 1
Query:  148 STSSAVDSG------RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            ++S+ V SG      RI EV R T ET VSV++N+DG+G A   T I F DHMLDQ A HGL D+ V   GD+ ID HHT EDVG+ +G AL +A+GD+KGI R+     PLDEAL  V +D+SGRP L+  +     R+G +DTQL   FFQ  VN +G+TLHI  L G N+HH  E+ FKAFARALR A E DPR  G I S+KG L
Sbjct:    2 TSSALVPSGLPGSLDRIAEVSRNTAETRVSVRVNLDGTGQAKLRTGIGFFDHMLDQTARHGLIDLDVDCAGDLHIDGHHTVEDVGITLGQALARAMGDKKGICRYAHAYVPLDEALSRVVVDISGRPGLHLHIPFSAGRIGDFDTQLTHEFFQGFVNHAGITLHIDNLKGVNAHHQCESVFKAFARALRAALERDPRSAGRIASTKGSL 210          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_NITEC (Imidazoleglycerol-phosphate dehydratase OS=Nitrosomonas eutropha (strain C91) GN=hisB PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.269e-53
Identity = 103/194 (53.09%), Postives = 135/194 (69.59%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            R  +V R T+ET ++V IN+DG G A+  + +PFLDHMLDQ+A HG+ D++V A GD+ ID HHT ED+G+A+G AL +A+GD+KGI R+G    PLDE L  V +DLSGRP L ++       +G++D  L++ FFQ  VN + MTLHI  LAGKN+HH  E+ FKAF RALR A   DPR    IPS+KGVL
Sbjct:    2 RKAQVTRNTQETQITVAINLDGQGKAELDSGVPFLDHMLDQIARHGMIDLNVAAKGDLHIDAHHTVEDIGIALGQALNRAIGDKKGIFRYGHAYVPLDETLSRVVIDLSGRPGLQFNTTFTRAVIGSFDVDLIQEFFQGFVNHAMMTLHIDNLAGKNAHHQAESIFKAFGRALRMAVTIDPRCDDLIPSTKGVL 195          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_GLUDA (Imidazoleglycerol-phosphate dehydratase OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=hisB PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.269e-53
Identity = 99/198 (50.00%), Postives = 140/198 (70.71%), Query Frame = 1
Query:  163 VDSGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            +D+ R   + RVT ET++++++++DG+G +  +T I F DHML  LA HG+FD+ + A GD+ ID HHT ED G+A+G A ++A+GD++GI RFG    PLDEAL  V  D+SGRP+L + +     ++G  DT+L E FF++   ++ +TLH+ Q AG+N HHI EA+FKA ARALR ATE DPR  G IPS+KGVL
Sbjct:    1 MDTARTATIHRVTSETDITIRLDLDGTGQSRIATGIGFFDHMLTALARHGMFDLDIEAKGDLHIDFHHTVEDTGIALGQAFVRAIGDKRGIRRFGHALVPLDEALSEVVADISGRPYLAWAVDFTRDKIGEMDTELFEEFFRAFAMSALVTLHVTQKAGRNCHHIAEASFKAAARALRMATEADPRAAGAIPSTKGVL 198          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_BURTA (Imidazoleglycerol-phosphate dehydratase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=hisB PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.269e-53
Identity = 103/194 (53.09%), Postives = 131/194 (67.53%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            R+ EV R T ET + VKI++DG+G    +T +PFLDHMLDQ+A HGL D+ + A GD  IDDHHT EDVG+ +G A+ +A+GD+KGI R+G    PLDEAL  V +D SGRP L + +     R+GT+D  L   FF+  VN +G+TLHI  L G N+HH +E  FKAF RALR A E D R  G IPS+KG L
Sbjct:    2 RVAEVVRNTSETQIRVKIDLDGTGRQKLATGVPFLDHMLDQIARHGLVDLDIEAHGDTHIDDHHTVEDVGITLGQAVAKAVGDKKGIRRYGHSYVPLDEALSRVVIDFSGRPGLEFHVPFTRARIGTFDVDLSIEFFRGFVNHAGVTLHIDNLRGVNAHHQLETVFKAFGRALRMAVELDERAAGQIPSTKGSL 195          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_BURCM (Imidazoleglycerol-phosphate dehydratase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=hisB PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.269e-53
Identity = 103/194 (53.09%), Postives = 131/194 (67.53%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            R+ EV R T ET + VK+++DG+G    +T +PFLDHMLDQ+A HGL D+ V A GD  IDDHHT EDVG+ +G A+ +A+GD+KGI R+G    PLDEAL  V +D SGRP L + +     R+GT+D  L   FF+  VN +G+TLHI  L G N+HH +E  FKAF RALR A E D R  G IPS+KG L
Sbjct:    2 RVAEVVRNTSETQIRVKLDLDGTGRQKLATGVPFLDHMLDQIARHGLIDLEVEAHGDTHIDDHHTVEDVGITLGQAVAKAIGDKKGIRRYGHSYVPLDEALSRVVIDFSGRPGLEFHVPFTRARIGTFDVDLSIEFFRGFVNHAGVTLHIDNLRGINAHHQLETVFKAFGRALRAAVELDERAAGQIPSTKGSL 195          
BLAST of CK939683 vs. ExPASy Swiss-Prot
Match: HIS7_BURA4 (Imidazoleglycerol-phosphate dehydratase OS=Burkholderia ambifaria (strain MC40-6) GN=hisB PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.269e-53
Identity = 103/194 (53.09%), Postives = 131/194 (67.53%), Query Frame = 1
Query:  175 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIRIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRGGTIPSSKGVL 756
            R+ EV R T ET + VK+++DG+G    +T +PFLDHMLDQ+A HGL D+ V A GD  IDDHHT EDVG+ +G A+ +A+GD+KGI R+G    PLDEAL  V +D SGRP L + +     R+GT+D  L   FF+  VN +G+TLHI  L G N+HH +E  FKAF RALR A E D R  G IPS+KG L
Sbjct:    2 RVAEVVRNTSETQIRVKLDLDGTGRQKLATGVPFLDHMLDQIARHGLIDLEVEAHGDTHIDDHHTVEDVGITLGQAVAKAIGDKKGIRRYGHSYVPLDEALSRVVIDFSGRPGLEFHVPFTRARIGTFDVDLSIEFFRGFVNHAGVTLHIDNLRGINAHHQLETVFKAFGRALRAAVELDERAAGQIPSTKGSL 195          
The following BLAST results are available for this feature:
BLAST of CK939683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HIS7_ACIAC5.697e-5453.23Imidazoleglycerol-phosphate dehydratase OS=Acidovo... [more]
HIS7_RHIL37.441e-5450.25Imidazoleglycerol-phosphate dehydratase OS=Rhizobi... [more]
HIS7_BURCH7.441e-5453.61Imidazoleglycerol-phosphate dehydratase OS=Burkhol... [more]
HIS7_BURCA7.441e-5453.61Imidazoleglycerol-phosphate dehydratase OS=Burkhol... [more]
HIS7_VEREI1.269e-5353.11Imidazoleglycerol-phosphate dehydratase OS=Vermine... [more]
HIS7_NITEC1.269e-5353.09Imidazoleglycerol-phosphate dehydratase OS=Nitroso... [more]
HIS7_GLUDA1.269e-5350.00Imidazoleglycerol-phosphate dehydratase OS=Glucona... [more]
HIS7_BURTA1.269e-5353.09Imidazoleglycerol-phosphate dehydratase OS=Burkhol... [more]
HIS7_BURCM1.269e-5353.09Imidazoleglycerol-phosphate dehydratase OS=Burkhol... [more]
HIS7_BURA41.269e-5353.09Imidazoleglycerol-phosphate dehydratase OS=Burkhol... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004747_A02 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIIF_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939683 ID=CK939683; Name=CK939683; organism=Citrus sinensis; type=EST; length=927bp
GGGGTTAAACCAAAAACCAATCTCTCTCGTAAACTTCTCCCCATCTCCAC
ACAATACTGCTCCTCAACGCGCCGCATGAACTCCCTCACAACACCACGCG
CCTCTCTAAACCCAGACGGCGACAGCAAACACAACAACGGGTCCGCCTCA
ACTTCCTCTGCCGTCGATTCTGGTCGAATTGGGGAAGTGAAAAGAGTCAC
GAAAGAGACCAACGTTTCTGTGAAGATTAACGTCGATGGCTCTGGCGTTG
CTGATTCATCCACTTGCATTCCCTTCCTAGATCACATGCTTGATCAACTG
GCTTCGCACGGGCTATTTGATGTGCACGTGAGGGCAACCGGAGACATTCG
CATTGATGATCATCATACCAATGAAGACGTTGGGCTTGCCATTGGCACGG
CATTGCTGCAGGCTCTTGGTGATAGGAAAGGAATTAATCGGTTTGGTGAT
TTTACAGCTCCTCTTGATGAAGCTTTGATTCATGTTTCATTGGATTTATC
TGGACGGCCACATTTAAATTATGATTTGCAAATTCCCACACAGAGAGTTG
GAACTTACGACACTCAATTGGTGGAGCACTTTTTCCAGTCTTTGGTGAAC
ACTTCTGGAATGACTCTTCATATTCGACAGCTTGCTGGAAAAAATTCTCA
TCACATTATTGAGGCAACCTTCAAAGCTTTTGCTAGGGCTCTCCGACAAG
CAACAGAGTATGATCCACGTCGCGGTGGAACTATACCAAGCTCAAAAGGG
GTTCTACTACGATCTTGATACTTCACGGGATTCATGGACTGGGGATGGGG
TTCTTCATGTAGCCTTAAGATTATTGTTAAGAGGGTTATAACTTCATCAC
CGGCTCCTACCATATGCATTAAAAGGTGTTCTTTTGATTTCTGGTGGTTC
ACTCTCATATCATTNNNGGNANNTGTG
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