CK939675

Overview
NameCK939675
Unique NameCK939675
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939675 vs. ExPASy Swiss-Prot
Match: TDH_DEIRA (L-threonine 3-dehydrogenase OS=Deinococcus radiodurans GN=tdh PE=3 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 3.698e-32
Identity = 78/192 (40.62%), Postives = 113/192 (58.85%), Query Frame = 1
Query:  220 ELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELG 795
            E+P+ GP D+L+R++   ICG+DVH  K    A   V  PMV+GHE  GV+  +GSEV+    GDRV+ E  ++C  C +C+ GR +LC   +        GS A  +V PA   FKLPD++  +  A+ +P    +H     ++  E +VLI GAGPIG +    AR  GA  +VI DV+DYRL +A+++G
Sbjct:   19 EVPTPGPNDLLIRIRKGSICGTDVHIYKWDDWASQTVPVPMVVGHEYVGVVAGMGSEVRGFEIGDRVSGEGHVTCGHCRNCRAGRRHLCRNTQGVGVNR-PGSFAEYLVLPAFNAFKLPDDIPDDVAAIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGCMAAAVARHVGARNVVITDVNDYRLDLARQMG 208          
BLAST of CK939675 vs. ExPASy Swiss-Prot
Match: TDH_DEIDV (L-threonine 3-dehydrogenase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=tdh PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.698e-32
Identity = 77/193 (39.90%), Postives = 114/193 (59.07%), Query Frame = 1
Query:  220 ELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELG 795
            E+P  GP D+L+R+K   ICG+DVH  K    A   +  PMV+GHE  GV+  +GSEV+    GDRV+ E  ++C  C +C+ GR +LC   +      P  GS A  +V PA   FKLPD++  +  A+ +P    +H     ++  E +VL+ GAGPIG++    AR  GA  +VI D++DYRL +A+++G
Sbjct:   19 EVPRPGPNDLLIRVKKGSICGTDVHIYKWDEWAQKTIPVPMVVGHEYVGVVAAMGSEVRGFNVGDRVSGEGHVTCGHCRNCRAGRRHLCRNTLGVGVNRP--GSFAEYLVLPAFNAFKLPDDIPDDVAAIFDPFGNAVHTALSFDLVGE-DVLVTGAGPIGVMAAAVARHVGARNVVITDINDYRLDLARKMG 208          
BLAST of CK939675 vs. ExPASy Swiss-Prot
Match: TDH_COLP3 (L-threonine 3-dehydrogenase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=tdh PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.835e-31
Identity = 75/192 (39.06%), Postives = 110/192 (57.29%), Query Frame = 1
Query:  220 ELPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELG 795
            E P LG  D+L+++K   ICG+D+H       A   V  PMV+GHE AG +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            GS A  +V PA   FKLPD +S +  ++ +P    +H     ++  E +VLI GAGPIG++    A+  GA  +VI D+++YRL +A+++G
Sbjct:   19 EKPKLGHNDLLIKIKKTAICGTDIHIYNWDEWAQKTVPTPMVVGHEYAGEVVGIGQEVKGFTLGDRVSGEGHITCGHCRNCRGGRTHLCRNTVGVGVNRA-GSFAEYLVIPAYNAFKLPDEISDDLASIFDPFGNAVHTALSFDLVGE-DVLITGAGPIGIMAAAVAKHVGARHVVITDINEYRLDLARKMG 208          
BLAST of CK939675 vs. ExPASy Swiss-Prot
Match: TDH_ANADF (L-threonine 3-dehydrogenase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=tdh PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.340e-31
Identity = 72/192 (37.50%), Postives = 112/192 (58.33%), Query Frame = 1
Query:  223 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPE-MKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELG 795
            +P +G +DV +R++   ICG+DVH       +   +  PM++GHE  GV++ VG EV+   PGDRV+ E  ++C  C +C+ GR +LC   +      P  GS A  VV PAD  +++PD++  E  A+ +P     H      +  E +VL+ GAGPIG++ +  AR  GA  +V+ DV+DYRL +A+ +G
Sbjct:   21 VPEVGVHDVRIRVRKSAICGTDVHIYNWDEWSQRTIPVPMIVGHEYVGVVDAVGGEVEAFHPGDRVSGEGHVTCGFCRNCRAGRRHLCRHTIGVGVNRP--GSFAEYVVIPADNVYRIPDDIPDEVAAIFDPYGNATHTALSFELVGE-DVLVTGAGPIGVMAVSIARHVGARHVVVTDVNDYRLGLARRMG 209          
BLAST of CK939675 vs. ExPASy Swiss-Prot
Match: TDH_ANAD2 (L-threonine 3-dehydrogenase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=tdh PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.974e-31
Identity = 72/191 (37.70%), Postives = 111/191 (58.12%), Query Frame = 1
Query:  223 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELG 795
            +P +G +DV++R+    ICG+DVH       +   V  PMV+GHE  G +EKVG+EV+   PG+RV+ E  ++C  C +C+ GR +LC            GS A  VV PAD  +++PD++  +  A+ +P     H     ++  E +VL+ GAGPIG++    AR  GA  +V+ DV+DYRL +A+ +G
Sbjct:   21 VPEVGVHDVMIRVTKSAICGTDVHIYNWDEWSQKTVPVPMVVGHEYVGRVEKVGAEVEAFRPGERVSGEGHVTCGFCRNCRAGRRHLCRHTVGVGVNR-PGSFAEYVVIPADNVYRIPDDIPDDIAAIFDPFGNATHTALSFDLVGE-DVLVTGAGPIGVMAAAIARHVGARHVVVTDVNDYRLDLARRMG 209          
BLAST of CK939675 vs. ExPASy Swiss-Prot
Match: TDH_ANASK (L-threonine 3-dehydrogenase OS=Anaeromyxobacter sp. (strain K) GN=tdh PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.554e-30
Identity = 71/191 (37.17%), Postives = 111/191 (58.12%), Query Frame = 1
Query:  223 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELG 795
            +P +G +DV++++    ICG+DVH       +   V  PMV+GHE  G +EKVG+EV+   PG+RV+ E  ++C  C +C+ GR +LC            GS A  VV PAD  +++PD++  +  A+ +P     H     ++  E +VL+ GAGPIG++    AR  GA  +V+ DV+DYRL +A+ +G
Sbjct:   21 VPEVGVHDVMIKVTKSAICGTDVHIYNWDEWSQKTVPVPMVVGHEYVGRVEKVGAEVEAFRPGERVSGEGHVTCGFCRNCRAGRRHLCRHTVGVGVNR-PGSFAEYVVIPADNVYRIPDDIPDDIAAIFDPFGNATHTALSFDLVGE-DVLVTGAGPIGVMAAAIARHVGARHVVVTDVNDYRLDLARRMG 209          
BLAST of CK939675 vs. ExPASy Swiss-Prot
Match: TDH_ANADE (L-threonine 3-dehydrogenase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=tdh PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.554e-30
Identity = 71/191 (37.17%), Postives = 111/191 (58.12%), Query Frame = 1
Query:  223 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELG 795
            +P +G +DV++R+    ICG+DVH       +   V  PMV+GHE  G +E+VG+EV+   PG+RV+ E  ++C  C +C+ GR +LC            GS A  VV PAD  +++PD++  +  A+ +P     H     ++  E +VL+ GAGPIG++    AR  GA  +V+ DV+DYRL +A+ +G
Sbjct:   21 VPEVGVHDVMIRVTKSAICGTDVHIYNWDEWSQKTVPVPMVVGHEYVGRVERVGAEVEAFRPGERVSGEGHVTCGFCRNCRAGRRHLCRHTVGVGVNR-PGSFAEYVVIPADNVYRIPDDIPDDIAAIFDPFGNATHTALSFDLVGE-DVLVTGAGPIGVMAAAIARHVGARHVVVTDVNDYRLDLARRMG 209          
BLAST of CK939675 vs. ExPASy Swiss-Prot
Match: TDH_SERP5 (L-threonine 3-dehydrogenase OS=Serratia proteamaculans (strain 568) GN=tdh PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.650e-30
Identity = 70/190 (36.84%), Postives = 108/190 (56.84%), Query Frame = 1
Query:  226 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELG 795
            P LG  D++++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            GS A  +V PA   FK+PDN+S E  ++ +P    +H     ++  E +VL+ GAGPIG++     +  GA  +VI DV++YRL +A+++G
Sbjct:   21 PELGHNDIMIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVKGFTVGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNR-PGSFAEYLVIPAFNAFKIPDNISDELASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVCKHVGARHVVITDVNEYRLDLARKMG 208          
BLAST of CK939675 vs. ExPASy Swiss-Prot
Match: TDH_YERPY (L-threonine 3-dehydrogenase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=tdh PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.520e-30
Identity = 71/190 (37.37%), Postives = 108/190 (56.84%), Query Frame = 1
Query:  226 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELG 795
            P LG  D++++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            GS A  +V PA   FK+PDN+S E  A+ +P    +H     ++  E +VL+ GAGPIG++     +  GA  +VI DV++YRL +A+++G
Sbjct:   21 PELGHNDIMIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVKGFNIGDRVSGEGHITCGHCRNCRGGRTHLCRNTVGVGVNR-PGSFAEYLVIPAFNAFKIPDNISDELAAIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVCKHVGARHVVITDVNEYRLDLARKMG 208          
BLAST of CK939675 vs. ExPASy Swiss-Prot
Match: TDH_YERPS (L-threonine 3-dehydrogenase OS=Yersinia pseudotuberculosis GN=tdh PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.520e-30
Identity = 71/190 (37.37%), Postives = 108/190 (56.84%), Query Frame = 1
Query:  226 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELG 795
            P LG  D++++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            GS A  +V PA   FK+PDN+S E  A+ +P    +H     ++  E +VL+ GAGPIG++     +  GA  +VI DV++YRL +A+++G
Sbjct:   21 PELGHNDIMIKIRKTAICGTDVHIYNWDEWSQKTIPVPMVVGHEYVGEVVAIGQEVKGFNIGDRVSGEGHITCGHCRNCRGGRTHLCRNTVGVGVNR-PGSFAEYLVIPAFNAFKIPDNISDELAAIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGIMAAAVCKHVGARHVVITDVNEYRLDLARKMG 208          
The following BLAST results are available for this feature:
BLAST of CK939675 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 301
Match NameE-valueIdentityDescription
TDH_DEIRA3.698e-3240.63L-threonine 3-dehydrogenase OS=Deinococcus radiodu... [more]
TDH_DEIDV3.698e-3239.90L-threonine 3-dehydrogenase OS=Deinococcus deserti... [more]
TDH_COLP31.835e-3139.06L-threonine 3-dehydrogenase OS=Colwellia psychrery... [more]
TDH_ANADF5.340e-3137.50L-threonine 3-dehydrogenase OS=Anaeromyxobacter sp... [more]
TDH_ANAD26.974e-3137.70L-threonine 3-dehydrogenase OS=Anaeromyxobacter de... [more]
TDH_ANASK1.554e-3037.17L-threonine 3-dehydrogenase OS=Anaeromyxobacter sp... [more]
TDH_ANADE1.554e-3037.17L-threonine 3-dehydrogenase OS=Anaeromyxobacter de... [more]
TDH_SERP52.650e-3036.84L-threonine 3-dehydrogenase OS=Serratia proteamacu... [more]
TDH_YERPY4.520e-3037.37L-threonine 3-dehydrogenase OS=Yersinia pseudotube... [more]
TDH_YERPS4.520e-3037.37L-threonine 3-dehydrogenase OS=Yersinia pseudotube... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004747_B02 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIIF_B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939675 ID=CK939675; Name=CK939675; organism=Citrus sinensis; type=EST; length=796bp
GCGGCCGAATCAAATCATATCCCATATCCAGAATCAGAATAAATGGTAGC
TTAAAATGTTGTGTACAGAGTGAAGTCTCTTCTGTGCACTTGTGTTTTTG
AAGGGTAAAAAGCAAATATGGGCAAAGGAGGGATGTCACAAGGAGAAAAG
AAGGATGGAGAAGAAGTTAACATGGCAGCTTGGCTTATGGGTGTCAACAC
CCTCAAGATTCAACCTTTTGAGCTTCCTTCTCTGGGACCATATGATGTTT
TAGTCAGGATGAAAGCCGTTGGTATTTGTGGAAGTGATGTGCATTATCTC
AAGACCTTGAGGTGTGCCGATTTTGTTGTGAAAGAGCCTATGGTGATTGG
GCACGAGTGTGCTGGGGTCATAGAGAAGGTGGGAAGCGAGGTGAAGACTT
TGGTGCCCGGTGACCGTGTGGCCCTGGAACCCGGGATCAGCTGCTGGCGA
TGCGATCACTGCAAAGGAGGTCGATACAATTTGTGTCCAGAGATGAAATT
TTTTGCAACTCCGCCCGTTCATGGTTCCCTGGCTAATCAGGTGGTGCATC
CTGCAGACCTATGTTTTAAGCTGCCGGACAATGTGAGCCTGGAGGAAGGG
GCTATGTGTGAGCCCTTGAGTGTTGGTCTTCATGCCTGCCGCCGTGCCAA
TATCGGTCCTGAGACAAATGTGCTTATCATGGGAGCAGGGCCCATAGGAC
TTGTCACAATGCTAGGAGCTCGTGCTTTTGGAGCTCCTAGAATTGTCATT
GTGGATGTGGATGACTATCGTTTATCTGTTGCAAAGGAACTTGGTG
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