CK939675

Overview
NameCK939675
Unique NameCK939675
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK939675 vs. ExPASy Swiss-Prot
Match: YGD6_SCHPO (Zinc-type alcohol dehydrogenase-like protein C1773.06c OS=Schizosaccharomyces pombe GN=SPBC1773.06c PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.016e-11
Identity = 60/209 (28.71%), Postives = 94/209 (44.98%), Query Frame = 1 
Query:  184 LMGVNTLKIQPFELPS-LGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSV----GLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELG 795
            + G + LK + +E+P  L P +VLV++KA  +   D+   K L      ++ P+V G + AG+IEKVG +V+    GD V     +  +  ++  G   +         T    G      V PA      P N+S EE A     +V    GL   +   + P  NVL++G G +    +  A A GA  + +    D +L  AK+LG
Sbjct:   11 ISGFDQLKPEEYEVPQKLNPGEVLVKLKAASLNYRDLIITKGLY--PLPLQLPVVPGSDGAGIIEKVGEDVEGFEKGDSV-----VCNFFTNYLDGTPTDFATHSALGGTR--DGCFQKYAVLPAHALVHAPKNLSFEEIATLPCAAVTAWNGLFGSKEHQVKPGNNVLVLGTGGVSTFALQFALAAGA-NVTVTSSSDEKLEFAKKLG 209
The following BLAST results are available for this feature:
BLAST of CK939675 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 301
Match NameE-valueIdentityDescription
YGD6_SCHPO8.016e-1128.71Zinc-type alcohol dehydrogenase-like protein C1773... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004747_B02 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIIF_B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939675 ID=CK939675; Name=CK939675; organism=Citrus sinensis; type=EST; length=796bp
GCGGCCGAATCAAATCATATCCCATATCCAGAATCAGAATAAATGGTAGC
TTAAAATGTTGTGTACAGAGTGAAGTCTCTTCTGTGCACTTGTGTTTTTG
AAGGGTAAAAAGCAAATATGGGCAAAGGAGGGATGTCACAAGGAGAAAAG
AAGGATGGAGAAGAAGTTAACATGGCAGCTTGGCTTATGGGTGTCAACAC
CCTCAAGATTCAACCTTTTGAGCTTCCTTCTCTGGGACCATATGATGTTT
TAGTCAGGATGAAAGCCGTTGGTATTTGTGGAAGTGATGTGCATTATCTC
AAGACCTTGAGGTGTGCCGATTTTGTTGTGAAAGAGCCTATGGTGATTGG
GCACGAGTGTGCTGGGGTCATAGAGAAGGTGGGAAGCGAGGTGAAGACTT
TGGTGCCCGGTGACCGTGTGGCCCTGGAACCCGGGATCAGCTGCTGGCGA
TGCGATCACTGCAAAGGAGGTCGATACAATTTGTGTCCAGAGATGAAATT
TTTTGCAACTCCGCCCGTTCATGGTTCCCTGGCTAATCAGGTGGTGCATC
CTGCAGACCTATGTTTTAAGCTGCCGGACAATGTGAGCCTGGAGGAAGGG
GCTATGTGTGAGCCCTTGAGTGTTGGTCTTCATGCCTGCCGCCGTGCCAA
TATCGGTCCTGAGACAAATGTGCTTATCATGGGAGCAGGGCCCATAGGAC
TTGTCACAATGCTAGGAGCTCGTGCTTTTGGAGCTCCTAGAATTGTCATT
GTGGATGTGGATGACTATCGTTTATCTGTTGCAAAGGAACTTGGTG
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