CK939675

Overview
NameCK939675
Unique NameCK939675
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK939675 vs. ExPASy Swiss-Prot
Match: TDH_SALPA (L-threonine 3-dehydrogenase OS=Salmonella paratyphi A GN=tdh PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.113e-28
Identity = 69/190 (36.32%), Postives = 108/190 (56.84%), Query Frame = 1 
Query:  226 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELG 795
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E +VL+ GAGPIG++    A+  GA  +VI DV++YRL +A+++G
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNR-PGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGVMAAAVAKHVGARHVVITDVNEYRLELARKMG 208
[Close]
BLAST of CK939675 vs. ExPASy Swiss-Prot
Match: TDH_SALNS (L-threonine 3-dehydrogenase OS=Salmonella newport (strain SL254) GN=tdh PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.113e-28
Identity = 69/190 (36.32%), Postives = 108/190 (56.84%), Query Frame = 1 
Query:  226 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELG 795
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E +VL+ GAGPIG++    A+  GA  +VI DV++YRL +A+++G
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNR-PGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGVMAAAVAKHVGARHVVITDVNEYRLELARKMG 208
[Close]
BLAST of CK939675 vs. ExPASy Swiss-Prot
Match: TDH_SALHS (L-threonine 3-dehydrogenase OS=Salmonella heidelberg (strain SL476) GN=tdh PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.113e-28
Identity = 69/190 (36.32%), Postives = 108/190 (56.84%), Query Frame = 1 
Query:  226 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELG 795
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E +VL+ GAGPIG++    A+  GA  +VI DV++YRL +A+++G
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNR-PGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGVMAAAVAKHVGARHVVITDVNEYRLELARKMG 208
[Close]
BLAST of CK939675 vs. ExPASy Swiss-Prot
Match: TDH_SALEP (L-threonine 3-dehydrogenase OS=Salmonella enteritidis PT4 (strain P125109) GN=tdh PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.113e-28
Identity = 69/190 (36.32%), Postives = 108/190 (56.84%), Query Frame = 1 
Query:  226 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELG 795
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E +VL+ GAGPIG++    A+  GA  +VI DV++YRL +A+++G
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNR-PGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGVMAAAVAKHVGARHVVITDVNEYRLELARKMG 208
[Close]
BLAST of CK939675 vs. ExPASy Swiss-Prot
Match: TDH_SALDC (L-threonine 3-dehydrogenase OS=Salmonella dublin (strain CT_02021853) GN=tdh PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.113e-28
Identity = 69/190 (36.32%), Postives = 108/190 (56.84%), Query Frame = 1 
Query:  226 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELG 795
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E +VL+ GAGPIG++    A+  GA  +VI DV++YRL +A+++G
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNR-PGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGVMAAAVAKHVGARHVVITDVNEYRLELARKMG 208
[Close]
BLAST of CK939675 vs. ExPASy Swiss-Prot
Match: TDH_SALCH (L-threonine 3-dehydrogenase OS=Salmonella choleraesuis GN=tdh PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.113e-28
Identity = 69/190 (36.32%), Postives = 108/190 (56.84%), Query Frame = 1 
Query:  226 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELG 795
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E +VL+ GAGPIG++    A+  GA  +VI DV++YRL +A+++G
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNR-PGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGVMAAAVAKHVGARHVVITDVNEYRLELARKMG 208
[Close]
BLAST of CK939675 vs. ExPASy Swiss-Prot
Match: TDH_SALA4 (L-threonine 3-dehydrogenase OS=Salmonella agona (strain SL483) GN=tdh PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.113e-28
Identity = 69/190 (36.32%), Postives = 108/190 (56.84%), Query Frame = 1 
Query:  226 PSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELG 795
            P +G  D+L++++   ICG+DVH       +   +  PMV+GHE  G +  +G EVK    GDRV+ E  I+C  C +C+GGR +LC            G  A  +V PA   FK+PDN+S +  ++ +P    +H     ++  E +VL+ GAGPIG++    A+  GA  +VI DV++YRL +A+++G
Sbjct:   21 PEVGHNDLLIKIRKTAICGTDVHIYNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGGRTHLCRNTTGVGVNR-PGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSFDLVGE-DVLVSGAGPIGVMAAAVAKHVGARHVVITDVNEYRLELARKMG 208
[Close]
BLAST of CK939675 vs. ExPASy Swiss-Prot
Match: TDH_FRATW (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=tdh PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.113e-28
Identity = 70/191 (36.65%), Postives = 111/191 (58.12%), Query Frame = 1 
Query:  223 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELG 795
            +P  G  DVL+++K   ICG+D+H     + +   +  PM+ GHE AG +   G  V ++  GDRV+ E  + C +C +C+ G+ +LC +        V G+ A  +V PA   FK+PD++S +  +  +P+   +H     N+  E +VLI GAGPIGL+ +  AR  GA RIVI D+++YRL +A++ G
Sbjct:   21 IPEYGYNDVLIKIKKTAICGTDLHIYNWDKWSQNTIPVPMITGHEFAGEVVAKGDGVTSVDIGDRVSGEGHLVCGQCRNCRAGKRHLCRKTIGIGV-NVQGAFAEYLVMPAVNVFKIPDSISDDIASTFDPMGNAIHTALSFNLTGE-DVLITGAGPIGLMAVKIARFCGARRIVITDINEYRLQMARDFG 209
[Close]
BLAST of CK939675 vs. ExPASy Swiss-Prot
Match: TDH_FRATT (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. tularensis GN=tdh PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.113e-28
Identity = 70/191 (36.65%), Postives = 111/191 (58.12%), Query Frame = 1 
Query:  223 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELG 795
            +P  G  DVL+++K   ICG+D+H     + +   +  PM+ GHE AG +   G  V ++  GDRV+ E  + C +C +C+ G+ +LC +        V G+ A  +V PA   FK+PD++S +  +  +P+   +H     N+  E +VLI GAGPIGL+ +  AR  GA RIVI D+++YRL +A++ G
Sbjct:   21 IPEYGYNDVLIKIKKTAICGTDLHIYNWDKWSQNTIPVPMITGHEFAGEVVAKGDGVTSVDIGDRVSGEGHLVCGQCRNCRAGKRHLCRKTIGIGV-NVQGAFAEYLVMPAVNVFKIPDSISDDIASTFDPMGNAIHTALSFNLTGE-DVLITGAGPIGLMAVKIARFCGARRIVITDINEYRLQMARDFG 209
[Close]
BLAST of CK939675 vs. ExPASy Swiss-Prot
Match: TDH_FRATO (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=tdh PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.113e-28
Identity = 70/191 (36.65%), Postives = 111/191 (58.12%), Query Frame = 1 
Query:  223 LPSLGPYDVLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGLHACRRANIGPETNVLIMGAGPIGLVTMLGARAFGAPRIVIVDVDDYRLSVAKELG 795
            +P  G  DVL+++K   ICG+D+H     + +   +  PM+ GHE AG +   G  V ++  GDRV+ E  + C +C +C+ G+ +LC +        V G+ A  +V PA   FK+PD++S +  +  +P+   +H     N+  E +VLI GAGPIGL+ +  AR  GA RIVI D+++YRL +A++ G
Sbjct:   21 IPEYGYNDVLIKIKKTAICGTDLHIYNWDKWSQNTIPVPMITGHEFAGEVVAKGDGVTSVDIGDRVSGEGHLVCGQCRNCRAGKRHLCRKTIGIGV-NVQGAFAEYLVMPAVNVFKIPDSISDDIASTFDPMGNAIHTALSFNLTGE-DVLITGAGPIGLMAVKIARFCGARRIVITDINEYRLQMARDFG 209
The following BLAST results are available for this feature:
BLAST of CK939675 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 301
Match NameE-valueIdentityDescription
TDH_SALPA1.113e-2836.32L-threonine 3-dehydrogenase OS=Salmonella paratyph... [more]
TDH_SALNS1.113e-2836.32L-threonine 3-dehydrogenase OS=Salmonella newport ... [more]
TDH_SALHS1.113e-2836.32L-threonine 3-dehydrogenase OS=Salmonella heidelbe... [more]
TDH_SALEP1.113e-2836.32L-threonine 3-dehydrogenase OS=Salmonella enteriti... [more]
TDH_SALDC1.113e-2836.32L-threonine 3-dehydrogenase OS=Salmonella dublin (... [more]
TDH_SALCH1.113e-2836.32L-threonine 3-dehydrogenase OS=Salmonella cholerae... [more]
TDH_SALA41.113e-2836.32L-threonine 3-dehydrogenase OS=Salmonella agona (s... [more]
TDH_FRATW1.113e-2836.65L-threonine 3-dehydrogenase OS=Francisella tularen... [more]
TDH_FRATT1.113e-2836.65L-threonine 3-dehydrogenase OS=Francisella tularen... [more]
TDH_FRATO1.113e-2836.65L-threonine 3-dehydrogenase OS=Francisella tularen... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004747_B02 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIIF_B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939675 ID=CK939675; Name=CK939675; organism=Citrus sinensis; type=EST; length=796bp
GCGGCCGAATCAAATCATATCCCATATCCAGAATCAGAATAAATGGTAGC
TTAAAATGTTGTGTACAGAGTGAAGTCTCTTCTGTGCACTTGTGTTTTTG
AAGGGTAAAAAGCAAATATGGGCAAAGGAGGGATGTCACAAGGAGAAAAG
AAGGATGGAGAAGAAGTTAACATGGCAGCTTGGCTTATGGGTGTCAACAC
CCTCAAGATTCAACCTTTTGAGCTTCCTTCTCTGGGACCATATGATGTTT
TAGTCAGGATGAAAGCCGTTGGTATTTGTGGAAGTGATGTGCATTATCTC
AAGACCTTGAGGTGTGCCGATTTTGTTGTGAAAGAGCCTATGGTGATTGG
GCACGAGTGTGCTGGGGTCATAGAGAAGGTGGGAAGCGAGGTGAAGACTT
TGGTGCCCGGTGACCGTGTGGCCCTGGAACCCGGGATCAGCTGCTGGCGA
TGCGATCACTGCAAAGGAGGTCGATACAATTTGTGTCCAGAGATGAAATT
TTTTGCAACTCCGCCCGTTCATGGTTCCCTGGCTAATCAGGTGGTGCATC
CTGCAGACCTATGTTTTAAGCTGCCGGACAATGTGAGCCTGGAGGAAGGG
GCTATGTGTGAGCCCTTGAGTGTTGGTCTTCATGCCTGCCGCCGTGCCAA
TATCGGTCCTGAGACAAATGTGCTTATCATGGGAGCAGGGCCCATAGGAC
TTGTCACAATGCTAGGAGCTCGTGCTTTTGGAGCTCCTAGAATTGTCATT
GTGGATGTGGATGACTATCGTTTATCTGTTGCAAAGGAACTTGGTG
back to top