CX675708

Overview
NameCX675708
Unique NameCX675708
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675708 vs. ExPASy Swiss-Prot
Match: CH60_THEM4 (60 kDa chaperonin OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=groL PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.314e-17
Identity = 44/99 (44.44%), Postives = 62/99 (62.63%), Query Frame = -3
Query:  344 DQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEAP 640
            D+KIG +I+  AL  P++ I             K+LEQD+   G+DA KGEY DM + GIIDP KV R+AL +AAS++ ++ TTE +VVE P+ +   P
Sbjct:  434 DEKIGAKIVYEALSAPINQIAKNAGYDGAIIIHKVLEQDDPAYGFDALKGEYCDMFERGIIDPAKVTRSALQNAASIAGMLLTTEVLVVEKPEPKNNNP 532          
BLAST of CX675708 vs. ExPASy Swiss-Prot
Match: CH60_PETMO (60 kDa chaperonin OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=groL PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.314e-17
Identity = 44/96 (45.83%), Postives = 62/96 (64.58%), Query Frame = -3
Query:  353 DQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEK 640
            D+KIG Q++  +L  PV  I             K++E+D++  GYD  K  YV+M +SGIIDP KV R+AL +AAS++S++ TTE +V E PKEEK
Sbjct:  434 DEKIGAQLVAKSLDAPVKQIIRNAGLEPAIIIEKIIEKDDSKYGYDVLKERYVNMFESGIIDPTKVTRSALQNAASIASMLLTTEVLVAEEPKEEK 529          
BLAST of CX675708 vs. ExPASy Swiss-Prot
Match: CH60_MAGSA (60 kDa chaperonin OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=groL PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.314e-17
Identity = 44/95 (46.32%), Postives = 62/95 (65.26%), Query Frame = -3
Query:  356 DQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEE 640
            DQ++G+ I++ AL+ PV  I            GK+ E  +   G+DA  G Y DM+K+GIIDP KV+RTAL DAASV+ L+ TTEA++ E PK++
Sbjct:  435 DQEVGISIVRRALQAPVRQIAENAGHDGAVVAGKIGESKDLSFGFDAQTGIYTDMIKAGIIDPTKVVRTALQDAASVAGLLITTEAMIAERPKKD 529          
BLAST of CX675708 vs. ExPASy Swiss-Prot
Match: CH60_AGRT5 (60 kDa chaperonin OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=groL PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.314e-17
Identity = 44/99 (44.44%), Postives = 67/99 (67.68%), Query Frame = -3
Query:  344 DQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEAP 640
            DQ+ G+ I++ AL++ V  I            GK+L+++  + GY+A  GEY D++  GI+DP+KV+RTAL +AASV+SL+ TTEA++ ELPK+E   P
Sbjct:  434 DQEAGINIVRKALQSLVRQIAENAGDEASIVVGKILDKNEDNYGYNAQTGEYGDLIALGIVDPVKVVRTALQNAASVASLLITTEAMIAELPKKESAMP 532          
BLAST of CX675708 vs. ExPASy Swiss-Prot
Match: CH60_RICCK (60 kDa chaperonin OS=Rickettsia canadensis (strain McKiel) GN=groL PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.022e-17
Identity = 45/99 (45.45%), Postives = 66/99 (66.67%), Query Frame = -3
Query:  344 DQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEAP 640
            DQ+ G++I+  ALK P+  I            GKLLE  + + G++A   +YVDM+++GIIDP KV+RTAL DAASV+SL+ TTE ++V+ P +E+  P
Sbjct:  435 DQQAGIEIVIEALKDPLKQIVENAGENGGVVVGKLLEHKDKNFGFNAQDMQYVDMIQAGIIDPAKVVRTALQDAASVASLIITTETLIVDEPSKEEPMP 533          
BLAST of CX675708 vs. ExPASy Swiss-Prot
Match: CH60_FERNB (60 kDa chaperonin OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=groL PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.022e-17
Identity = 43/98 (43.88%), Postives = 63/98 (64.29%), Query Frame = -3
Query:  347 DQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEA 640
            D+K+G QI+ NAL+ P+  I              +L +D+   G+DA KGEY +M + GIIDP KV R+AL +AAS++ ++ TTE +VVE P+E+K A
Sbjct:  434 DEKLGAQIVYNALEAPIRQIALNAGYDGAIIIHNVLSKDDVAYGFDALKGEYCNMYERGIIDPAKVTRSALQNAASIAGMLLTTEVLVVEKPEEKKPA 531          
BLAST of CX675708 vs. ExPASy Swiss-Prot
Match: CH60_EUGGR (Chaperonin CPN60, mitochondrial OS=Euglena gracilis GN=HSP60 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.022e-17
Identity = 44/92 (47.83%), Postives = 61/92 (66.30%), Query Frame = -3
Query:  365 DQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELP 640
            DQK GV+I+ +A+K P  TI             +LL +     GYDA +G+YV+M ++GIIDP KV++TALVDAASV+ LM TTEA + ++P
Sbjct:  452 DQKTGVRIVMSAIKLPAITIVKNAGGEGAVVIHQLLAEKKMQQGYDAQQGKYVNMFEAGIIDPAKVVKTALVDAASVAGLMITTEAAITDIP 543          
BLAST of CX675708 vs. ExPASy Swiss-Prot
Match: CH604_RHILO (60 kDa chaperonin 4 OS=Rhizobium loti GN=groL4 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.022e-17
Identity = 44/95 (46.32%), Postives = 59/95 (62.11%), Query Frame = -3
Query:  356 DQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEE 640
            DQ  G+ I++ AL+ P   I            GK+LE      GY+A  GEY DM+  GI+DP+KV+RTAL DAASV+ L+ TTEA++ E PK+E
Sbjct:  434 DQAAGINIVRRALQAPARQIASNAGAEASIVAGKILENKGATFGYNAQTGEYGDMIAMGIVDPVKVVRTALQDAASVAGLLVTTEAMIAEAPKKE 528          
BLAST of CX675708 vs. ExPASy Swiss-Prot
Match: CH602_ANADF (60 kDa chaperonin 2 OS=Anaeromyxobacter sp. (strain Fw109-5) GN=groL2 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.022e-17
Identity = 45/98 (45.92%), Postives = 64/98 (65.31%), Query Frame = -3
Query:  344 QKIGVQIIQNALKTPVHTIXXXXXXXXXXXXGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEAP 637
            +K G+ I++ AL+ P+  I             K+ E  +T+ G++AA G+Y D+VKSG+IDP KV R+AL +A+SV+SLM TT A+V E PKEE  AP
Sbjct:  435 EKFGLDIVRRALEEPLRQIAGNGGYEASIVVNKVKESKDTNFGFNAATGDYEDLVKSGVIDPTKVSRSALQNASSVASLMLTTMALVAEKPKEESAAP 532          
BLAST of CX675708 vs. ExPASy Swiss-Prot
Match: CH601_BRASB (60 kDa chaperonin 1 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=groL1 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.022e-17
Identity = 47/98 (47.96%), Postives = 61/98 (62.24%), Query Frame = -3
Query:  347 DQKIGVQIIQNALKTPVHTIXXXXXXXXXXXXGKLLEQDNTDLGYDAAKGEYVDMVKSGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKEEKEA 640
            D + G+ I+  AL+ PV  I            GK+LE+ +   G+DA   +YVDMV  GIIDP KV+RTAL DA+SV+ L+ TTEA+V ELPKE   A
Sbjct:  435 DVQAGINIVLKALEAPVRQIAENAGVEGSLVVGKILEEKSETFGFDAQSEDYVDMVAKGIIDPAKVVRTALQDASSVAGLLVTTEAMVAELPKEAAPA 532          
The following BLAST results are available for this feature:
BLAST of CX675708 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_THEM42.314e-1744.4460 kDa chaperonin OS=Thermosipho melanesiensis (st... [more]
CH60_PETMO2.314e-1745.8360 kDa chaperonin OS=Petrotoga mobilis (strain DSM... [more]
CH60_MAGSA2.314e-1746.3260 kDa chaperonin OS=Magnetospirillum magneticum (... [more]
CH60_AGRT52.314e-1744.4460 kDa chaperonin OS=Agrobacterium tumefaciens (st... [more]
CH60_RICCK3.022e-1745.4560 kDa chaperonin OS=Rickettsia canadensis (strain... [more]
CH60_FERNB3.022e-1743.8860 kDa chaperonin OS=Fervidobacterium nodosum (str... [more]
CH60_EUGGR3.022e-1747.83Chaperonin CPN60, mitochondrial OS=Euglena gracili... [more]
CH604_RHILO3.022e-1746.3260 kDa chaperonin 4 OS=Rhizobium loti GN=groL4 PE=... [more]
CH602_ANADF3.022e-1745.9260 kDa chaperonin 2 OS=Anaeromyxobacter sp. (strai... [more]
CH601_BRASB3.022e-1747.9660 kDa chaperonin 1 OS=Bradyrhizobium sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_64C01_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-64C01-E2-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675708 ID=CX675708; Name=CX675708; organism=Citrus sinensis; type=EST; length=645bp
TTTTTTTTTTTTTTTTTGCAAGGAAGATATATTTTATTTTGAAATAAAAT
ACAGTTCAATTAAAAACCAACCAATCATCCAAGTGGATTGCCAAACGACC
TAAATCAGCAATGTTTTATCCTAAATTGCCAAACGACCTAAATGCCTACC
TCTCACTATGATTACAAGGATGCCTTATGATTGACACAATTGAGACTCAT
TAAGCTGGCCACAAAATCCTAACATTCAGATTGTATGTTGATTATGGAAC
CCCAAAAAAAAAAAAAAGGGACAATCAGTTAAGCATTCTACTGGGATTTC
AATAGTCCATGCCGCCCATTCCGCCCATGCCACCCATGCCTCCCGGAGCT
TCCTTCTCCTCCTTAGGCAGCTCAACAACAATAGCTTCAGTTGTGGTCAT
TAAAGATGATACACTTGCAGCATCAACCAAAGCAGTTCTGATTACTTTCA
ATGGATCGATAATTCCAGATTTGACCATATCAACATACTCACCTTTGGCG
GCATCATACCCAAGGTCAGTGTTGTCCTGCTCCAATAGCTTACCAACCAC
AACAGCCCCCTCAACTCCTGCATTAACAGCAATTGTGTGCACTGGTGTCT
TTAGAGCATTCTGAATAATCTGAACACCAATCTTCTGGTCAAAGT
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