CX675707

Overview
NameCX675707
Unique NameCX675707
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX675707 vs. ExPASy Swiss-Prot
Match: TPPC3_CAEEL (Probable trafficking protein particle complex subunit 3 OS=Caenorhabditis elegans GN=ZK1098.5 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.016e-27
Identity = 64/140 (45.71%), Postives = 95/140 (67.86%), Query Frame = 1 
Query:   91 ANVERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAK-SNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPD--TCQGLYYCNILSGVIRGALEMVSMK 501
            A+ ++++AELF LTYGA V ++L D E+ ++V  QLD+MG+N+G RL D+FLAK +NV RCVD R+ A+V+ +     +LG++AT S+W +     +I LE NPL + V++P      GL Y  +++G IRGALE V  K
Sbjct:   10 ADSKKMSAELFCLTYGAMVTEMLKDYEDPKDVTIQLDKMGFNMGTRLADDFLAKNANVPRCVDTRQIADVLCRNAIPCYLGISATASSWTSGDREFTITLEANPLTELVQVPAHLVSAGLSYSQLIAGAIRGALEAVHFK 149
The following BLAST results are available for this feature:
BLAST of CX675707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
TPPC3_CAEEL2.016e-2745.71Probable trafficking protein particle complex subu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_64B10_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-64B10-C20-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675707 ID=CX675707; Name=CX675707; organism=Citrus sinensis; type=EST; length=778bp
CCTATAAATTCTGGTGATCAAATTTAGTTATCGCTTTGCAGAGATCTCAT
AATGGCTCCCGTTGGTCCTCGATCCGGTGACGCAATCTTCGCCAACGTGG
AACGCGTGAATGCTGAGCTGTTTACATTAACTTACGGCGCCACTGTGCGT
CAGCTGCTCACGGATCTGGAGGAGGTTGAGGAAGTTAACAAACAGCTTGA
TCAAATGGGCTATAATATTGGGATTCGACTGATTGATGAGTTTCTAGCAA
AATCTAATGTCACTAGGTGTGTAGACTTCAGGGAGACTGCTGAAGTGATT
GCAAAGGTGGGTTTCAAAATGTTTTTAGGGGTTACTGCAACCGTGAGCAA
CTGGGATGCTGATGGGACATGTTGCAGTATAATTTTGGAAGATAATCCTC
TGGTGGATTTTGTTGAGCTTCCTGATACTTGTCAAGGCCTTTATTATTGC
AACATCTTGAGTGGAGTCATTAGAGGGGCCCTAGAGATGGTTTCAATGAA
AACTGAAGTCACTTGGATCCGCGATGTGCTTCGAGGGGATGATGCATATG
AGCTGCAGGTGAAACTTCTGAAACAAGTCCCAGAAGAATATCCATACAAG
GATGATGAGTAATATCCTGTCTTGGTGCCTGATGCGGACATACCGAGTTT
ACATTCTTGCACTTCATTTTCCCTAAAGAATATCAGTTTTAACAGCTTGT
TCTCTGTATAAATATTCACTTGGGAGAAACTTTGAATAGGTTTTCCGTTT
TCAAATGCATGGTAATGCTTTCAGATTA
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