CK939598

Overview
NameCK939598
Unique NameCK939598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK939598 vs. ExPASy Swiss-Prot
Match: HSP23_MAIZE (17.0 kDa class II heat shock protein OS=Zea mays GN=HSP18 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.068e-11
Identity = 43/115 (37.39%), Postives = 58/115 (50.43%), Query Frame = 3 
Query:  240 ETSAVVNARVDWKETPEAHAFKADLPGLXXXXXXXXXXXXXXLQISGQRGIEREDKNDTWH-RWERSSGMFSRRFRLPENVKMDQIKASMENGVLTVTVPKVEEARKANVKAIEI 581
            +  A+     D KE   A+AF  D+PGL              L ISG+R   RE++ D  + R ER  G F R+F LP+N  +D++ A   +GVLTVTV K+        K IEI
Sbjct:   39 DARAMAATPADVKELAGAYAFVVDMPGLSTGDIRVQVEDERVLVISGER--RREEREDAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVTVEKLPPPEPKKPKTIEI 151
The following BLAST results are available for this feature:
BLAST of CK939598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
HSP23_MAIZE7.068e-1137.3917.0 kDa class II heat shock protein OS=Zea mays G... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004748_B01 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IVF_B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939598 ID=CK939598; Name=CK939598; organism=Citrus sinensis; type=EST; length=639bp
GGGGGTCTGAAGAAAGGCAACTTTCCTGTAATCATTTACATATCCTACAT
TCTGCAACAGCCACTTTTCCATTAGTTCGTAACCGAAAAGAAAACTAGAA
AATGTCGCTAATTCCAAGCTTCTTCGGCAACCGACGCAGCAGTGTGTTCG
ATCCATTCTCGCTCGACGTTTGGGATCCATTCAGGGACTTCCCTTTGCCG
TCTGGCTATTCGTCTGCGGTGTCGTCTCAGTTCCCTCCAGAAACCTCTGC
TGTCGTTAACGCCCGCGTGGACTGGAAGGAAACCCCGGAAGCCCACGCGT
TCAAGGCCGATCTTCCGGGGCTGAGGAAAGAGGAAGTGAAGGTCGAGGTC
GAGGACGACAGGGTGCTTCAGATAAGCGGGCAGAGGGGGATCGAGAGGGA
AGACAAGAACGACACGTGGCATCGCTGGGAGCGCAGCAGCGGCATGTTCT
CCAGGAGGTTCAGGCTGCCCGAGAATGTGAAGATGGATCAGATTAAGGCT
TCCATGGAGAATGGTGTGCTCACTGTTACAGTCCCTAAGGTGGAGGAGGC
CAGGAAAGCCAATGTCAAGGCTATTGAAATTTCTGGCTGATAAATTGATA
TTTAATAAACGAAGATGATTTAAAATTTGTGTTGAATCC
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