CK939539

Overview
NameCK939539
Unique NameCK939539
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAB4A_RAT (Ras-related protein Rab-4A OS=Rattus norvegicus GN=Rab4a PE=2 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 2.112e-44
Identity = 87/148 (58.78%), Postives = 114/148 (77.03%), Query Frame = 1
Query:  184 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            +Y +LFK+++IG+ G GKSCLL QF +K+F+   + TIGVEFG+++I +  K +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L +WL DAR  A+ N+ I+L GNK DL   R V+  E  +FA+E+ L+F+E S
Sbjct:    4 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETS 151          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAB4A_HUMAN (Ras-related protein Rab-4A OS=Homo sapiens GN=RAB4A PE=1 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 2.112e-44
Identity = 87/148 (58.78%), Postives = 114/148 (77.03%), Query Frame = 1
Query:  184 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            +Y +LFK+++IG+ G GKSCLL QF +K+F+   + TIGVEFG+++I +  K +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L +WL DAR  A+ N+ I+L GNK DL   R V+  E  +FA+E+ L+F+E S
Sbjct:    4 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETS 151          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAB4A_BOVIN (Ras-related protein Rab-4A OS=Bos taurus GN=RAB4A PE=2 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 2.112e-44
Identity = 87/148 (58.78%), Postives = 114/148 (77.03%), Query Frame = 1
Query:  184 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            +Y +LFK+++IG+ G GKSCLL QF +K+F+   + TIGVEFG+++I +  K +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L +WL DAR  A+ N+ I+L GNK DL   R V+  E  +FA+E+ L+F+E S
Sbjct:    4 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDTDREVTFLEASRFAQENELMFLETS 151          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAB4B_DANRE (Ras-related protein Rab-4B OS=Danio rerio GN=rab4b PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 4.704e-44
Identity = 86/148 (58.11%), Postives = 112/148 (75.68%), Query Frame = 1
Query:  184 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            +Y +LFK+++IG  G GKSCLL QF + +F+   + TIGVEFG+R++ +  K +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L +WL DAR  A+ N+ I+L GNK DL   R V+  E  +FA+E+ L+F+E S
Sbjct:    4 TYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARTLASPNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETS 151          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAB4A_MOUSE (Ras-related protein Rab-4A OS=Mus musculus GN=Rab4a PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 8.024e-44
Identity = 85/148 (57.43%), Postives = 114/148 (77.03%), Query Frame = 1
Query:  184 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            +Y +LFK+++IG+ G GKSCLL QF +K+F+   + TIG+EFG+++I +  K +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L +WL DAR  A+ N+ ++L GNK DL   R V+  E  +FA+E+ L+F+E S
Sbjct:    4 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGMEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVLILCGNKKDLDADREVTFLEASRFAQENELMFLETS 151          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.335e-43
Identity = 80/150 (53.33%), Postives = 110/150 (73.33%), Query Frame = 1
Query:  178 NMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            N    Y+FK ++IGD+ VGKS +L +F    F      TIGVEF  R + ID+K +K QIWDTAGQE +R++T +YYRGA GA+LVYDIT+R+TF+H+  WLE+ R HA+ N+ I+LIGNKCDL ++R V TE+ ++FA++ GL F+E S
Sbjct:   11 NAKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILIGNKCDLVNQRDVPTEDAKEFAEKEGLFFLETS 160          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.049e-43
Identity = 82/155 (52.90%), Postives = 112/155 (72.26%), Query Frame = 1
Query:  163 LINQTNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            + N+ +  Y YLFK ++IGD+GVGKS +L +FT   F      TIGVEF  R + ++ K +K QIWDTAGQE +R+IT +YYRGA GALLVYDIT+R+TF+++  WL + R HA++N+ IM+ GNK DL H RAVS E+G+  A++ GL F+E S
Sbjct:    1 MANRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLKHLRAVSEEDGQALAEKEGLSFLETS 155          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.049e-43
Identity = 84/152 (55.26%), Postives = 107/152 (70.39%), Query Frame = 1
Query:  172 QTNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            +T+  Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  + + +D K +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TRR TF + A WL++ R H + N+ +MLIGNK DL H  AV TE+G+ FA+   L FME S
Sbjct:    5 RTDDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETS 156          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.976e-42
Identity = 81/147 (55.10%), Postives = 105/147 (71.43%), Query Frame = 1
Query:  187 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +D+K IK QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++ +WL++ R H + N+ +ML+GNK DL H  AV TE+ + FA++  L FME S
Sbjct:   10 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETS 156          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.581e-42
Identity = 83/147 (56.46%), Postives = 104/147 (70.75%), Query Frame = 1
Query:  187 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  + + IDNK IK QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  T+ ++  WL++ R H + N+ +MLIGNK DL H  AVST+E +  A+  GL FME S
Sbjct:   10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIVVMLIGNKSDLRHLVAVSTDEAKGLAEREGLYFMETS 156          
The following BLAST results are available for this feature:
BLAST of CK939539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB4A_RAT2.112e-4458.78Ras-related protein Rab-4A OS=Rattus norvegicus GN... [more]
RAB4A_HUMAN2.112e-4458.78Ras-related protein Rab-4A OS=Homo sapiens GN=RAB4... [more]
RAB4A_BOVIN2.112e-4458.78Ras-related protein Rab-4A OS=Bos taurus GN=RAB4A ... [more]
RAB4B_DANRE4.704e-4458.11Ras-related protein Rab-4B OS=Danio rerio GN=rab4b... [more]
RAB4A_MOUSE8.024e-4457.43Ras-related protein Rab-4A OS=Mus musculus GN=Rab4... [more]
RB11A_LOTJA2.335e-4353.33Ras-related protein Rab11A OS=Lotus japonicus GN=R... [more]
RB2BV_BETVU3.049e-4352.90Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
RB11D_LOTJA3.049e-4355.26Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
RAA1C_ARATH1.976e-4255.10Ras-related protein RABA1c OS=Arabidopsis thaliana... [more]
YPT3_NICPL2.581e-4256.46Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004749_B03 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939539 ID=CK939539; Name=CK939539; organism=Citrus sinensis; type=EST; length=628bp
GGGGAAAACTAATGAACACGCCTTAGTAGTAGTAGTAGTTAAAAATAATT
TTGTACCTCTTATTATTTTTCCAAGTTGTTTCAAATCGTTTCCTTTCTCG
TTTCCTCCTGTTCTAAATCAAAAGTGAAATCCATAAATAAATTGACTCCT
GATTGATCGGTCCTCATCAATCAAACAAACATGTCGTACGCTTACCTCTT
CAAGTACATCATCATCGGCGATACCGGAGTTGGTAAATCATGTCTTCTTC
TCCAATTCACGGATAAGCGGTTTCAGCCGGTTCACGACCTAACTATAGGA
GTTGAATTTGGGGCCAGAATGATCACCATCGATAACAAACCGATCAAACT
CCAAATCTGGGACACGGCTGGTCAAGAATCCTTCAGATCTATTACCAGGT
CTTACTATAGAGGGGCTGCTGGTGCATTACTTGTCTATGATATTACCAGG
AGGGAAACTTTTAATCACTTGGCTAGCTGGCTGGAGGATGCAAGGCAGCA
TGCAAATGCAAACATGACTATTATGCTCATTGGTAACAAGTGTGATCTTG
CTCATAGAAGGGCTGTGAGTACGGAGGAAGGTGAGCAGTTTGCAAAGGAG
CATGGATTGATCTTCATGGAAGCCTCTG
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