CK939539
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAB4A_RAT (Ras-related protein Rab-4A OS=Rattus norvegicus GN=Rab4a PE=2 SV=2) HSP 1 Score: 178.718 bits (452), Expect = 2.112e-44 Identity = 87/148 (58.78%), Postives = 114/148 (77.03%), Query Frame = 1 Query: 184 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627 +Y +LFK+++IG+ G GKSCLL QF +K+F+ + TIGVEFG+++I + K +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L +WL DAR A+ N+ I+L GNK DL R V+ E +FA+E+ L+F+E S Sbjct: 4 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETS 151
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAB4A_HUMAN (Ras-related protein Rab-4A OS=Homo sapiens GN=RAB4A PE=1 SV=2) HSP 1 Score: 178.718 bits (452), Expect = 2.112e-44 Identity = 87/148 (58.78%), Postives = 114/148 (77.03%), Query Frame = 1 Query: 184 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627 +Y +LFK+++IG+ G GKSCLL QF +K+F+ + TIGVEFG+++I + K +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L +WL DAR A+ N+ I+L GNK DL R V+ E +FA+E+ L+F+E S Sbjct: 4 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETS 151
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAB4A_BOVIN (Ras-related protein Rab-4A OS=Bos taurus GN=RAB4A PE=2 SV=2) HSP 1 Score: 178.718 bits (452), Expect = 2.112e-44 Identity = 87/148 (58.78%), Postives = 114/148 (77.03%), Query Frame = 1 Query: 184 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627 +Y +LFK+++IG+ G GKSCLL QF +K+F+ + TIGVEFG+++I + K +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L +WL DAR A+ N+ I+L GNK DL R V+ E +FA+E+ L+F+E S Sbjct: 4 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDTDREVTFLEASRFAQENELMFLETS 151
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAB4B_DANRE (Ras-related protein Rab-4B OS=Danio rerio GN=rab4b PE=2 SV=1) HSP 1 Score: 177.563 bits (449), Expect = 4.704e-44 Identity = 86/148 (58.11%), Postives = 112/148 (75.68%), Query Frame = 1 Query: 184 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627 +Y +LFK+++IG G GKSCLL QF + +F+ + TIGVEFG+R++ + K +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L +WL DAR A+ N+ I+L GNK DL R V+ E +FA+E+ L+F+E S Sbjct: 4 TYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARTLASPNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETS 151
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAB4A_MOUSE (Ras-related protein Rab-4A OS=Mus musculus GN=Rab4a PE=1 SV=1) HSP 1 Score: 176.792 bits (447), Expect = 8.024e-44 Identity = 85/148 (57.43%), Postives = 114/148 (77.03%), Query Frame = 1 Query: 184 SYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627 +Y +LFK+++IG+ G GKSCLL QF +K+F+ + TIG+EFG+++I + K +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L +WL DAR A+ N+ ++L GNK DL R V+ E +FA+E+ L+F+E S Sbjct: 4 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGMEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVLILCGNKKDLDADREVTFLEASRFAQENELMFLETS 151
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 2.335e-43 Identity = 80/150 (53.33%), Postives = 110/150 (73.33%), Query Frame = 1 Query: 178 NMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627 N Y+FK ++IGD+ VGKS +L +F F TIGVEF R + ID+K +K QIWDTAGQE +R++T +YYRGA GA+LVYDIT+R+TF+H+ WLE+ R HA+ N+ I+LIGNKCDL ++R V TE+ ++FA++ GL F+E S Sbjct: 11 NAKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILIGNKCDLVNQRDVPTEDAKEFAEKEGLFFLETS 160
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 3.049e-43 Identity = 82/155 (52.90%), Postives = 112/155 (72.26%), Query Frame = 1 Query: 163 LINQTNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627 + N+ + Y YLFK ++IGD+GVGKS +L +FT F TIGVEF R + ++ K +K QIWDTAGQE +R+IT +YYRGA GALLVYDIT+R+TF+++ WL + R HA++N+ IM+ GNK DL H RAVS E+G+ A++ GL F+E S Sbjct: 1 MANRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLKHLRAVSEEDGQALAEKEGLSFLETS 155
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 3.049e-43 Identity = 84/152 (55.26%), Postives = 107/152 (70.39%), Query Frame = 1 Query: 172 QTNMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627 +T+ Y YLFK ++IGD+GVGKS LL +FT F TIGVEF + + +D K +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TRR TF + A WL++ R H + N+ +MLIGNK DL H AV TE+G+ FA+ L FME S Sbjct: 5 RTDDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETS 156
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1) HSP 1 Score: 172.17 bits (435), Expect = 1.976e-42 Identity = 81/147 (55.10%), Postives = 105/147 (71.43%), Query Frame = 1 Query: 187 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627 Y YLFK ++IGD+GVGKS LL +FT F TIGVEF R + +D+K IK QIWDTAGQE +R+IT +YYRGA GALLVYD+TR TF ++ +WL++ R H + N+ +ML+GNK DL H AV TE+ + FA++ L FME S Sbjct: 10 YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETS 156
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 2.581e-42 Identity = 83/147 (56.46%), Postives = 104/147 (70.75%), Query Frame = 1 Query: 187 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627 Y YLFK ++IGD+GVGKS LL +FT F TIGVEF + + IDNK IK QIWDTAGQE +R+IT +YYRGA GALLVYD+TR T+ ++ WL++ R H + N+ +MLIGNK DL H AVST+E + A+ GL FME S Sbjct: 10 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIVVMLIGNKSDLRHLVAVSTDEAKGLAEREGLYFMETS 156 The following BLAST results are available for this feature:
BLAST of CK939539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939539 ID=CK939539; Name=CK939539; organism=Citrus sinensis; type=EST; length=628bpback to top |