CK939539

Overview
NameCK939539
Unique NameCK939539
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RASC_DICDI (Ras-like protein rasC OS=Dictyostelium discoideum GN=rasC PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.685e-17
Identity = 55/146 (37.67%), Postives = 79/146 (54.11%), Query Frame = 1
Query:  196 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAHR-RAVSTEEGEQFAKEHGLIFMEAS 627
            L K +I+GD GVGKS L +Q T  +F   +D TI   +  + + ID +   L I DTAGQE + ++   Y R   G L+VY I  R +F  + ++ E   R    +   I++IGNK DL  + R V   EG++ AK  G  F+E S
Sbjct:    4 LLKLVIVGDGGVGKSALTIQLTQNQFIAEYDPTIENSY-RKQVNIDEEVYMLDILDTAGQEEYSAMRDQYIRSGRGFLIVYSIISRASFEAVTTFREQILRVKDLSTYPIVIIGNKADLPDKDRKVPPMEGKELAKSFGAPFLETS 148          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RALB_PONAB (Ras-related protein Ral-B OS=Pongo abelii GN=RALB PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.685e-17
Identity = 53/146 (36.30%), Postives = 83/146 (56.85%), Query Frame = 1
Query:  196 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANAN-MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            L K I++G  GVGKS L LQF    F   ++ T    +  +++ +D + +++ I DTAGQE + +I  +Y+R   G LLV+ IT  E+F   A + E   R  A  + + ++++GNK DL  RR V  EE    A+E G+ ++E S
Sbjct:   14 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETS 158          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RALB_MACFA (Ras-related protein Ral-B OS=Macaca fascicularis GN=RALB PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.685e-17
Identity = 53/146 (36.30%), Postives = 83/146 (56.85%), Query Frame = 1
Query:  196 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANAN-MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            L K I++G  GVGKS L LQF    F   ++ T    +  +++ +D + +++ I DTAGQE + +I  +Y+R   G LLV+ IT  E+F   A + E   R  A  + + ++++GNK DL  RR V  EE    A+E G+ ++E S
Sbjct:   14 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETS 158          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RALB_HUMAN (Ras-related protein Ral-B OS=Homo sapiens GN=RALB PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.685e-17
Identity = 53/146 (36.30%), Postives = 83/146 (56.85%), Query Frame = 1
Query:  196 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANAN-MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            L K I++G  GVGKS L LQF    F   ++ T    +  +++ +D + +++ I DTAGQE + +I  +Y+R   G LLV+ IT  E+F   A + E   R  A  + + ++++GNK DL  RR V  EE    A+E G+ ++E S
Sbjct:   14 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETS 158          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RALBA_XENLA (Ras-related protein ralB-A OS=Xenopus laevis GN=ralb-A PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.685e-17
Identity = 54/152 (35.53%), Postives = 85/152 (55.92%), Query Frame = 1
Query:  178 NMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANAN-MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            N S   L K I++G  GVGKS L LQF    F   ++ T    +  +++ +D + +++ I DTAGQE + +I  +Y+R   G LLV+ IT  E+F   A + E   R  A  + + ++++GNK DL  RR V  +E    A+E G+ ++E S
Sbjct:    8 NQSSLVLHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLIVGNKSDLEDRRQVPMDEARGKAEEWGVQYVETS 158          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAB7B_DICDI (Ras-related protein Rab-7B OS=Dictyostelium discoideum GN=rab7B PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.685e-17
Identity = 51/140 (36.43%), Postives = 80/140 (57.14%), Query Frame = 1
Query:  196 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIM----LIGNKCDLAHRRAVSTEEGEQFAKEH 603
            + K +IIG+  VGK+ +L ++ DKRF  +   TIGV+F    + +    + LQ+WDT+GQE FRS+  SYYRGA   +LV+D+T  +T   L  W +D  +       I+    ++GNK D    R V+ +   Q+ K++
Sbjct:    7 IIKVVIIGEKSVGKTSILRRYVDKRFVTLKP-TIGVDF----VMVSENMVTLQLWDTSGQERFRSLEISYYRGADYCILVFDVTNEKTLYDLKLWRDDFIEKTEIRDPILFPFIILGNKID-DPNRVVTEKAAIQWCKDN 140          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAP1B_XENTR (Ras-related protein Rap-1b OS=Xenopus tropicalis GN=rap1b PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.200e-17
Identity = 51/145 (35.17%), Postives = 79/145 (54.48%), Query Frame = 1
Query:  199 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-HGLIFMEAS 627
            +K +++G  GVGKS L +QF    F   +D TI   +  + + +D +   L+I DTAG E F ++   Y +   G  LVY IT + TFN L    E   R     ++ ++L+GNKCDL   R V  E+G+  A++ +   F+E+S
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESS 147          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAP1B_XENLA (Ras-related protein Rap-1b OS=Xenopus laevis GN=rap1b PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.200e-17
Identity = 51/145 (35.17%), Postives = 79/145 (54.48%), Query Frame = 1
Query:  199 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-HGLIFMEAS 627
            +K +++G  GVGKS L +QF    F   +D TI   +  + + +D +   L+I DTAG E F ++   Y +   G  LVY IT + TFN L    E   R     ++ ++L+GNKCDL   R V  E+G+  A++ +   F+E+S
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESS 147          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RAP1B_DANRE (Ras-related protein Rap-1b OS=Danio rerio GN=rap1b PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.200e-17
Identity = 51/145 (35.17%), Postives = 79/145 (54.48%), Query Frame = 1
Query:  199 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-HGLIFMEAS 627
            +K +++G  GVGKS L +QF    F   +D TI   +  + + +D +   L+I DTAG E F ++   Y +   G  LVY IT + TFN L    E   R     ++ ++L+GNKCDL   R V  E+G+  A++ +   F+E+S
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNSCAFLESS 147          
BLAST of CK939539 vs. ExPASy Swiss-Prot
Match: RALBB_XENLA (Ras-related protein ralB-B OS=Xenopus laevis GN=ralb-B PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.200e-17
Identity = 54/152 (35.53%), Postives = 85/152 (55.92%), Query Frame = 1
Query:  178 NMSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLED-ARQHANAN-MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEAS 627
            N S   L K I++G  GVGKS L LQF    F   ++ T    +  +++ +D + +++ I DTAGQE + +I  +Y+R   G LLV+ IT  E+F   A + E   R  A  + + ++++GNK DL  RR V  +E    A+E G+ ++E S
Sbjct:    8 NQSSLVLHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEDRRQVPMDEARGKAEEWGVQYVETS 158          
The following BLAST results are available for this feature:
BLAST of CK939539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASC_DICDI1.685e-1737.67Ras-like protein rasC OS=Dictyostelium discoideum ... [more]
RALB_PONAB1.685e-1736.30Ras-related protein Ral-B OS=Pongo abelii GN=RALB ... [more]
RALB_MACFA1.685e-1736.30Ras-related protein Ral-B OS=Macaca fascicularis G... [more]
RALB_HUMAN1.685e-1736.30Ras-related protein Ral-B OS=Homo sapiens GN=RALB ... [more]
RALBA_XENLA1.685e-1735.53Ras-related protein ralB-A OS=Xenopus laevis GN=ra... [more]
RAB7B_DICDI1.685e-1736.43Ras-related protein Rab-7B OS=Dictyostelium discoi... [more]
RAP1B_XENTR2.200e-1735.17Ras-related protein Rap-1b OS=Xenopus tropicalis G... [more]
RAP1B_XENLA2.200e-1735.17Ras-related protein Rap-1b OS=Xenopus laevis GN=ra... [more]
RAP1B_DANRE2.200e-1735.17Ras-related protein Rap-1b OS=Danio rerio GN=rap1b... [more]
RALBB_XENLA2.200e-1735.53Ras-related protein ralB-B OS=Xenopus laevis GN=ra... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004749_B03 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939539 ID=CK939539; Name=CK939539; organism=Citrus sinensis; type=EST; length=628bp
GGGGAAAACTAATGAACACGCCTTAGTAGTAGTAGTAGTTAAAAATAATT
TTGTACCTCTTATTATTTTTCCAAGTTGTTTCAAATCGTTTCCTTTCTCG
TTTCCTCCTGTTCTAAATCAAAAGTGAAATCCATAAATAAATTGACTCCT
GATTGATCGGTCCTCATCAATCAAACAAACATGTCGTACGCTTACCTCTT
CAAGTACATCATCATCGGCGATACCGGAGTTGGTAAATCATGTCTTCTTC
TCCAATTCACGGATAAGCGGTTTCAGCCGGTTCACGACCTAACTATAGGA
GTTGAATTTGGGGCCAGAATGATCACCATCGATAACAAACCGATCAAACT
CCAAATCTGGGACACGGCTGGTCAAGAATCCTTCAGATCTATTACCAGGT
CTTACTATAGAGGGGCTGCTGGTGCATTACTTGTCTATGATATTACCAGG
AGGGAAACTTTTAATCACTTGGCTAGCTGGCTGGAGGATGCAAGGCAGCA
TGCAAATGCAAACATGACTATTATGCTCATTGGTAACAAGTGTGATCTTG
CTCATAGAAGGGCTGTGAGTACGGAGGAAGGTGAGCAGTTTGCAAAGGAG
CATGGATTGATCTTCATGGAAGCCTCTG
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