CX675696

Overview
NameCX675696
Unique NameCX675696
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length941
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX675696 vs. ExPASy Swiss-Prot
Match: AT1A_ARTSF (Sodium/potassium-transporting ATPase subunit alpha-A OS=Artemia sanfranciscana PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.686e-17
Identity = 48/144 (33.33%), Postives = 87/144 (60.42%), Query Frame = -3 
Query:  505 NDAPALKAADIGLSMGIQGTEVQRESSDIVIMDDNFTSVVTVLRWGRCVYNNIQKFLQFQLTVNVAALVINFVAAVSSGKVPLTAVQLLWVNLIMDTLGALALATEQPANDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVTIL 936
            ND+PALK ADIG++MGI G++V ++++D++++DDNF S+VT +  GR +++NI+K + + LT  +  L    +  +    + +  V +L ++L  D + A+++A E P  D     P    +P+  KL+   LI  A  Q+ ++
Sbjct:  695 NDSPALKKADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNIKKSIAYTLTSKIPELSPFLMYILFDLPLAIGTVTILCIDLGTDVVPAISMAYEGPEAD-----PRKPRDPVKEKLVNERLISMAYGQIGVM 833
[Close]
BLAST of CX675696 vs. ExPASy Swiss-Prot
Match: ATC3_SCHPO (Calcium-transporting ATPase 3 OS=Schizosaccharomyces pombe GN=cta3 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.426e-17
Identity = 42/122 (34.43%), Postives = 76/122 (62.30%), Query Frame = -3 
Query:  586 NDAPALKAADIGLSMGIQGTEVQRESSDIVIMDDNFTSVVTVLRWGRCVYNNIQKFLQFQLTVNVAALVINFVAAVSSGKV-----PLTAVQLLWVNLIMDTLGALALATEQPANDLMSKPP 936
            ND+P+LK A++G++MG  G++V +++SDIV+ DDNF+S+V  +  GR +++NI +F+   L  NV  +++  V      +V     P++ V++LW N+I  +  ++ L  E    D+M + P
Sbjct:  706 NDSPSLKQANVGIAMGQNGSDVAKDASDIVLTDDNFSSIVNAIEEGRRMFDNIMRFVLHLLVSNVGEVILLVVGLAFRDEVHLSVFPMSPVEILWCNMITSSFPSMGLGMELAQPDVMERLP 827
The following BLAST results are available for this feature:
BLAST of CX675696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
AT1A_ARTSF5.686e-1733.33Sodium/potassium-transporting ATPase subunit alpha... [more]
ATC3_SCHPO7.426e-1734.43Calcium-transporting ATPase 3 OS=Schizosaccharomyc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_64B04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-64B04-C8-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675696 ID=CX675696; Name=CX675696; organism=Citrus sinensis; type=EST; length=941bp
TTTTTTATTCAAATAAATTTCATTATGAACTAATTAGCTATTAGACTTAT
ATTTACAGATCGAGCTAAGAAACTTATGAAACTAAACAAAGATAAAAGAA
AATATTAACAGATAGAGAATTGATTATGGATTTGTGATTCATGAAGCTCT
TTGCTTGAAAAGCAGCTGCGTGCCAGAAACGGGAATGCACTTGAAGAGAA
AACCAATTGGCCAAGACATAGCTGCAATGCCAATACAAGCTGCCCATTGC
CCCCAGTTCAGCCTCTCAGTATCAGCAAACTTCTTCAGAAACTCTACCAT
TATGAGTTGAAGAACAATGGTAATTCCAATGATTGCTAGAAACAACTTGT
TCTTGTGTATCCCTTTGAATATATTCTTCTTCTCAAGTTTCCTAGCATTG
AACTCATTGAAGATTTGGCAGAAGACAAAAGTATTGAAAATCATGGTATC
TTTAACACTTTCATTCACGCTGAAGATTGATCTTCCTTTAAATTGCAGAG
TCAGTAAGATGGTCACCTGATAAATGGCCTGAGGGATGAGATTCCTCCAC
ATGAGTTTTGTTATCAGAGGCTCGGATCGGCCAACGGGAGGCTTTGACAT
GAGATCATTGGCGGGCTGCTCAGTGGCCAATGCCAATGCTCCTAGTGTAT
CCATTATCAGGTTCACCCAGAGCAGCTGAACAGCAGTTAGTGGGACTTTT
CCTGAAGAAACAGCAGCAACAAAGTTGATGACAAGAGCAGCAACATTGAC
TGTGAGCTGAAATTGAAGGAATTTCTGAATGTTGTTGTAGACACATCGTC
CCCATCTCAGAACTGTCACTACAGAGGTGAAGTTATCATCCATAATGACG
ATATCTGAGCTCTCCCTTTGCACTTCAGTTCCTTGAATTCCCATCGAGAG
TCCTATATCTGCTGCCTTTAGAGCAGGAGCATCATTTGTGC
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