CK939533

Overview
NameCK939533
Unique NameCK939533
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939533 vs. ExPASy Swiss-Prot
Match: GAL10_PACTA (Bifunctional protein GAL10 OS=Pachysolen tannophilus GN=GAL10 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.475e-57
Identity = 112/232 (48.28%), Postives = 152/232 (65.52%), Query Frame = 3
Query:  102 ILVTGGAGFIGTHCALQLLHGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEK----IPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKADPEWRIILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDG 785
            ILVTGGAG+IG+H  ++L++ G+ VV++DNL NS  + + R++ L      K++ F   DL + D LD++F      AV+HF ALKAV ES + P  Y+ NN+ G I+L + M + N K +VFSSSAT+YG   +    IP  E  P G  NPYG TK   E I  DV   D  W+  +LRYFNP+GAH SG +GEDP GIPNNL+P++ QVA+GR  +L+V+G DY +KDG
Sbjct:    4 ILVTGGAGYIGSHTVVELVNNGYNVVVVDNLVNSSYDVIVRIEVLT----RKQIPFFKIDLNDHDALDQVFKLYPIQAVLHFAALKAVGESTKFPLNYYSNNVGGAISLLKVMEENNVKNIVFSSSATVYGDATRFENMIPIPEHCPTGPTNPYGETKITIENIIRDVYANDKSWKCAILRYFNPIGAHPSGLIGEDPLGIPNNLLPFLAQVAIGRREKLSVFGSDYNSKDG 231          
BLAST of CK939533 vs. ExPASy Swiss-Prot
Match: GALE_LACCA (UDP-glucose 4-epimerase OS=Lactobacillus casei GN=galE PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.544e-42
Identity = 96/230 (41.74%), Postives = 133/230 (57.83%), Query Frame = 3
Query:  102 ILVTGGAGFIGTHCALQLLHGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKADPEW--RIILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDG 785
            I V GGAG+IG+H   QLL  G  VV++DNL     +AVD            +  F+ GD+R+   L ++FS +K D ++HF A   V ES++ P +YFDNN  G I L +AM ++  KK+VFSS+A  YG+P+++P  E  P    NPYG +K   E+I   +  AD  +  + + LRYFN  GA   G +GED      +++P I QVA G    L +YG DYPTKDG
Sbjct:    3 IAVLGGAGYIGSHTVKQLLAAGEDVVVLDNLITGHRKAVD-----------PRARFYQGDIRDYHFLSQVFSQEKIDGIVHFAAFSIVPESMKDPLKYFDNNTGGMITLLEAMNQFGIKKIVFSSTAATYGEPKQVPIKETDPQVPTNPYGESKLAMEKI---MHWADVAYGLKFVALRYFNVAGAMPDGSIGEDHHP-ETHIVPIILQVAAGTRTGLQIYGDDYPTKDG 217          
BLAST of CK939533 vs. ExPASy Swiss-Prot
Match: GALE_BACHD (UDP-glucose 4-epimerase OS=Bacillus halodurans GN=galE PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.248e-41
Identity = 95/235 (40.43%), Postives = 137/235 (58.30%), Query Frame = 3
Query:  102 ILVTGGAGFIGTHCALQLLHGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTK-------QWCEEIAFDVQKADPEWRIILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDG 785
            ILVTGGAG+IG+H  L LL  G +V+++DNL      A+  V             F+ GD+R+   LD +F++   D VIHF A   V ESV+ P  Y++NN+IGT  L + M +++ KK+VFSS+A  YG+P +IP  E  P    NPYG TK        WC+E A+ +Q        + LRYFN  GA  +G++GED     ++L+P + QVA+G+   + ++G DY T+DG
Sbjct:    3 ILVTGGAGYIGSHTVLFLLEQGEQVIVLDNLQKGHAGALSDVT------------FYHGDIRDDQLLDTIFTTHSIDTVIHFAANSLVGESVKQPIEYYENNVIGTHTLLKKMLEHDVKKIVFSSTAATYGEPVQIPIQESDPTIPTNPYGETKLAIEKMFHWCQE-AYGLQ-------YVCLRYFNAAGADPNGRIGED-HSPESHLIPIVLQVALGQRERVAIFGDDYQTEDG 216          
BLAST of CK939533 vs. ExPASy Swiss-Prot
Match: ARAE2_ORYSJ (Probable UDP-arabinose 4-epimerase 2 OS=Oryza sativa subsp. japonica GN=UEL-2 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.242e-41
Identity = 93/232 (40.09%), Postives = 133/232 (57.33%), Query Frame = 3
Query:   99 NILVTGGAGFIGTHCALQLLHGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKADPEWRIILLRYFNPVGAHESGKLGEDPK---GIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDG 785
            ++LVTGGAG+IG+H  L+LL   ++V ++DNL      AV RV     PE  + L+F   DL +   ++K+FS   FDAV+HF A+  V ES   P RY+ N    T+ + +AMA YN K L++SS+   YG+P+ +P  E  P   +NPYG+ K+  E+I  D  K   E  +++LRYFN +G+   G+LGE P+        +       A+G  P L V G DYPT DG
Sbjct:   51 HVLVTGGAGYIGSHATLRLLRDNYRVTIVDNLSRGNMGAV-RVLQRLFPEPGR-LQFIYADLGDAKAVNKIFSENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLTVLEAMAAYNVKTLIYSSTCATYGEPDTMPITEATPQNPINPYGKAKKMAEDIILDFSKRS-EMAVMILRYFNVIGSDPGGRLGEAPRPELREHGRISGACFDAALGIIPGLKVRGTDYPTADG 279          
BLAST of CK939533 vs. ExPASy Swiss-Prot
Match: GALE_LACHE (UDP-glucose 4-epimerase OS=Lactobacillus helveticus GN=galE PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 9.450e-41
Identity = 94/228 (41.23%), Postives = 130/228 (57.02%), Query Frame = 3
Query:  102 ILVTGGAGFIGTHCALQLLHGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKADPEWRIILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDG 785
            +LV GGAG+IG+H   +L+  G  V+++D L+    +AVD            K +F+ GD+ +   + K+   +K DAV+HF A   V ESV+ P +Y+DNN+ G I+L QAM   N K LVFSSSA  YG P+K+P  ED P   +NPYG TK   E+I     KAD   +   LRYFN  GA   G +GED      +L+P I + A+    +  ++G DY TKDG
Sbjct:    3 VLVIGGAGYIGSHAVRELVKEGNDVLVLDALYTGHRKAVD-----------PKAKFYQGDIEDTFLVSKILRDEKIDAVMHFAAYSLVPESVKKPLKYYDNNVTGMISLLQAMNDANVKYLVFSSSAATYGIPKKLPITEDTPLNPINPYGETKMMMEKIMAWADKAD-GIKYTALRYFNVAGASSDGSIGED-HAPETHLIPNILKSAISGDGKFTIFGDDYDTKDG 217          
BLAST of CK939533 vs. ExPASy Swiss-Prot
Match: ARAE4_ARATH (Putative UDP-arabinose 4-epimerase 4 OS=Arabidopsis thaliana GN=At5g44480 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 9.450e-41
Identity = 90/232 (38.79%), Postives = 138/232 (59.48%), Query Frame = 3
Query:   99 NILVTGGAGFIGTHCALQLLHGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKADPEWRIILLRYFNPVGAHESGKLGEDPK---GIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDG 785
            ++LVTGGAG+IG+H AL+LL   ++V ++DNL      AV  ++ L  P+  + L+F   DL +   ++K+FS   FDAV+HF A+  V ES  +P +Y+ N    T+ + +AMA++  KKL++SS+   YG+PEK+P  ED P   +NPYG+ K+  E++  D  K + +  +++LRYFN +G+   G+LGE P+        +       A G  P L V G DY T DG
Sbjct:   96 HVLVTGGAGYIGSHAALRLLRDSYRVTIVDNLSRGNLGAVKTLQQLF-PQTGR-LQFIYADLGDPLAVEKIFSENAFDAVMHFAAVAYVGESTLYPLKYYHNITSNTLGVLEAMARHKVKKLIYSSTCATYGEPEKMPITEDTPQVPINPYGKAKKMAEDMILDFSK-NSDMAVMILRYFNVIGSDPGGRLGEAPRPELREQGRISGACFDAARGFIPGLQVKGTDYKTSDG 324          
BLAST of CK939533 vs. ExPASy Swiss-Prot
Match: ARAE3_ORYSJ (Probable UDP-arabinose 4-epimerase 3 OS=Oryza sativa subsp. japonica GN=UEL-3 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.749e-40
Identity = 89/232 (38.36%), Postives = 137/232 (59.05%), Query Frame = 3
Query:   99 NILVTGGAGFIGTHCALQLLHGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKADPEWRIILLRYFNPVGAHESGKLGEDPK---GIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDG 785
            ++LVTGGAG+IG+H +L+LL   ++V ++DNL      AV  +++L  P+  + L+F   DL ++  ++K+F+   FDAV+HF A+  V ES   P RY+ N    T+ + +AMA +  K L++SS+   YG+PEK+P VE      +NPYG+ K+  E+I  D  K   +  +++LRYFN +G+   G+LGE P+        +       A+G  P L V G DYPT DG
Sbjct:   65 HVLVTGGAGYIGSHASLRLLKDNYRVTIVDNLSRGNMGAVKVLQELF-PQPGR-LQFIYADLGDQKTVNKIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLLILEAMASHGVKTLIYSSTCATYGEPEKMPIVETTRQLPINPYGKAKKMAEDIILDFTKGRKDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAALGIIPGLKVKGTDYPTTDG 294          
BLAST of CK939533 vs. ExPASy Swiss-Prot
Match: ARAE1_ORYSJ (Probable UDP-arabinose 4-epimerase 1 OS=Oryza sativa subsp. japonica GN=UEL-1 PE=2 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 1.045e-39
Identity = 89/246 (36.18%), Postives = 139/246 (56.50%), Query Frame = 3
Query:   60 SPPILCLAMASEKNILVTGGAGFIGTHCALQLLHGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKA-DPEWRIILLRYFNPVGAHESGKLGEDPK---GIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDG 785
            +P +  +      ++LVTGGAG+IG+H AL+LL   F+V ++DNL      A+  +++L       +L+F   DL +   ++++F+   FDAV+HF A+  V ES   P RY+ N    T+ + +AMA +N + L++SS+   YG+PEK+P  E  P   +NPYG+ K+  E+I  D  K+   +  +++LRYFN +G+   G+LGE PK        +       A+G  P L V G DY T DG
Sbjct:   61 TPSVFSIHEPGVTHVLVTGGAGYIGSHAALRLLKDSFRVTIVDNLSRGNMGAIKVLQNLFSEP--GRLQFIYADLGDPKAVNRIFAENAFDAVMHFAAVAYVGESTLEPLRYYHNITSNTLVVLEAMAAHNVRTLIYSSTCATYGEPEKMPITEGTPQFPINPYGKAKKMAEDIILDFSKSKKADMAVMILRYFNVIGSDPEGRLGEAPKPELREHGRISGACFDAALGIIPGLKVKGTDYETPDG 304          
BLAST of CK939533 vs. ExPASy Swiss-Prot
Match: ARAE3_ARATH (Probable UDP-arabinose 4-epimerase 3 OS=Arabidopsis thaliana GN=At4g20460 PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 3.040e-39
Identity = 93/245 (37.96%), Postives = 140/245 (57.14%), Query Frame = 3
Query:   60 SPPILCLAMASEKNILVTGGAGFIGTHCALQLLHGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKADPEWRIILLRYFNPVGAHESGKLGEDPK---GIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDG 785
            SP     +     ++LVTGGAG+IG+H AL+LL   ++V ++DNL      AV  ++ L  PE  + L+F   DL +   +DK+FS   FDAV+HF A+  V ES   P +Y+ N    T+ + +A+A++  KKL++SS+   YG+P+K+P VE  P   +NPYG+ K+  E++  D  K + +  +++LRYFN +G+   G+LGE PK        +       A G  P L V G DY T DG
Sbjct:   58 SPTAFSRSEEGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNLGAVKVLQGLF-PEPGR-LQFIYADLGDAKAVDKIFSENAFDAVMHFAAVAYVGESTLDPLKYYHNITSNTLVVLEAVARHKVKKLIYSSTCATYGEPDKMPIVEVTPQVPINPYGKAKKMAEDMILDFSK-NSDMAVMILRYFNVIGSDPEGRLGEAPKPELREHGRISGACFDAARGVIPGLQVKGTDYKTGDG 299          
BLAST of CK939533 vs. ExPASy Swiss-Prot
Match: ARAE2_ARATH (Putative UDP-arabinose 4-epimerase 2 OS=Arabidopsis thaliana GN=At2g34850 PE=2 SV=3)

HSP 1 Score: 162.155 bits (409), Expect = 3.040e-39
Identity = 91/245 (37.14%), Postives = 139/245 (56.73%), Query Frame = 3
Query:   60 SPPILCLAMASEKNILVTGGAGFIGTHCALQLLHGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKADPEWRIILLRYFNPVGAHESGKLGEDPK---GIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDG 785
            +P +   +     ++LVTGGAG+IG+H AL+LL   ++V ++DNL      AV  ++ L  PE  K L+F   DL + + ++K+FS   FDAV+HF A+  V ES Q P +Y+ N    T+ + + MA +  K L++SS+   YG+PEK+P  E+ P   +NPYG+ K+  E+I  D  K +    +++LRYFN +G+   G+LGE P+        +       A G  P L + G DY T DG
Sbjct:   58 TPSVFSRSEPGVTHVLVTGGAGYIGSHAALRLLKDSYRVTIVDNLSRGNLGAVKILQQLF-PEPGK-LQFIYADLGDANAVNKIFSENAFDAVMHFAAVAYVGESTQFPLKYYHNITSNTLVVLETMAAHGVKTLIYSSTCATYGEPEKMPITEETPQVPINPYGKAKKMAEDIILDFSK-NSIMAVMILRYFNVIGSDPEGRLGEAPRPELSEHGRISGACFDAARGIIPGLQIKGTDYKTVDG 299          
The following BLAST results are available for this feature:
BLAST of CK939533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
GAL10_PACTA2.475e-5748.28Bifunctional protein GAL10 OS=Pachysolen tannophil... [more]
GALE_LACCA6.544e-4241.74UDP-glucose 4-epimerase OS=Lactobacillus casei GN=... [more]
GALE_BACHD3.248e-4140.43UDP-glucose 4-epimerase OS=Bacillus halodurans GN=... [more]
ARAE2_ORYSJ4.242e-4140.09Probable UDP-arabinose 4-epimerase 2 OS=Oryza sati... [more]
GALE_LACHE9.450e-4141.23UDP-glucose 4-epimerase OS=Lactobacillus helveticu... [more]
ARAE4_ARATH9.450e-4138.79Putative UDP-arabinose 4-epimerase 4 OS=Arabidopsi... [more]
ARAE3_ORYSJ2.749e-4038.36Probable UDP-arabinose 4-epimerase 3 OS=Oryza sati... [more]
ARAE1_ORYSJ1.045e-3936.18Probable UDP-arabinose 4-epimerase 1 OS=Oryza sati... [more]
ARAE3_ARATH3.040e-3937.96Probable UDP-arabinose 4-epimerase 3 OS=Arabidopsi... [more]
ARAE2_ARATH3.040e-3937.14Putative UDP-arabinose 4-epimerase 2 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004749_C10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939533 ID=CK939533; Name=CK939533; organism=Citrus sinensis; type=EST; length=787bp
GGGGACTTTATTCATTTNNNTCTTTTTAATATAATCGTCGCTCTCACCTT
CTTTCCCCTTCTCCTCCAATCCTTTGCCTTGCAATGGCGTCAGAGAAAAA
TATCCTGGTGACCGGTGGAGCTGGCTTTATTGGAACGCACTGTGCGCTTC
AGCTTCTACATGGAGGGTTTAAGGTGGTGCTTATCGATAATTTACATAAC
TCTGTCCCTGAAGCTGTTGATAGAGTCAAGGACTTGGCGGGTCCTGAGCT
CGCTAAGAAGCTCGAGTTCCATGTGGGTGATCTTAGGAACAAGGATGACT
TGGATAAGCTTTTTTCTAGTCAAAAATTTGATGCTGTGATCCATTTTGGT
GCCCTTAAGGCTGTGGCAGAGAGTGTTCAACATCCTTTCCGTTATTTTGA
TAATAATTTGATTGGTACCATCAATCTGTATCAGGCCATGGCAAAATATA
ACTGTAAGAAGTTGGTATTTTCATCATCCGCAACTATCTATGGACAGCCT
GAAAAAATACCTTGTGTTGAGGACTTCCCGTATGGTGCTATGAATCCTTA
TGGACGAACTAAGCAATGGTGCGAAGAAATTGCTTTTGATGTTCAAAAGG
CAGACCCAGAATGGAGAATAATATTACTGAGGTACTTCAATCCTGTTGGT
GCTCATGAGAGTGGTAAACTCGGTGAAGATCCAAAGGGCATACCAAACAA
TCTCATGCCTTACATACAGCAAGTCGCCGTCGGCAGACATCCAGAGCTTA
ATGTTTATGGTCAGGATTATCCAACAAAGGATGGTAG
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