CK939533

Overview
NameCK939533
Unique NameCK939533
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939533 vs. ExPASy Swiss-Prot
Match: GAL10_CANMA (Bifunctional protein GAL10 (Fragment) OS=Candida maltosa GN=GAL10 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.553e-27
Identity = 62/135 (45.93%), Postives = 90/135 (66.67%), Query Frame = 3
Query:   90 SEKNILVTGGAGFIGTHCALQLLHGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYG 494
            S+   LVTGGAG+IG+H  ++L++ G KVV+ DNL NS  +AV R++ +    ++  ++    D+RN+ +L+++FS+ K   VIHF ALKAV ES + P  Y+DNN+ GTI L       N K +VFSSSAT+YG
Sbjct:    2 SDDIFLVTGGAGYIGSHTVIELINHGIKVVIADNLSNSSYDAVARIEFIVKQHVSHFIKV---DIRNEKELNQVFSNHKISGVIHFAALKAVGESTKIPLEYYDNNVSGTIALLNVCKSNNVKTIVFSSSATVYG 133          
BLAST of CK939533 vs. ExPASy Swiss-Prot
Match: GALE_METJA (Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii GN=MJ0211 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.804e-23
Identity = 77/229 (33.62%), Postives = 119/229 (51.97%), Query Frame = 3
Query:  102 ILVTGGAGFIGTHCALQLLHGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSS-ATIYGQPEKIPCVEDFPYGAMNPYGRTKQWCEE-IAFDVQKADPEWRIILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKD 782
            ILVTGGAGFIG+H   +L+   + V+++DNL       ++            K EF   D+R+KD LD+  + +  + VIH  A   V  SV++P    D N++GTIN+ + M KY+  K+VF+SS   +YG+P  +P  E+ P   ++PYG +K   EE I    +    E+ I  LRY N  G        +DPKG    +  +I ++   + P   ++G    T+D
Sbjct:    2 ILVTGGAGFIGSHIVDKLIENNYDVIILDNLTTGNKNNIN-----------PKAEFVNADIRDKD-LDEKINFKDVEVVIHQAAQINVRNSVENPVYDGDINVLGTINILEMMRKYDIDKIVFASSGGAVYGEPNYLPVDENHPINPLSPYGLSKYVGEEYIKLYNRLYGIEYAI--LRYSNVYGER------QDPKGEAGVISIFIDKMLKNQSP--IIFGDGNQTRD 208          
BLAST of CK939533 vs. ExPASy Swiss-Prot
Match: GALE_MYCPN (UDP-glucose 4-epimerase OS=Mycoplasma pneumoniae GN=galE PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.676e-21
Identity = 79/242 (32.64%), Postives = 117/242 (48.35%), Query Frame = 3
Query:   90 SEKNILVTGGAGFIGTHCALQLL--HGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCK-KLVFSSSATIYGQPEKIPCVEDFPYG---AMNPYGRTKQWCEEIAFDVQKADPEWRIILLRYFNPVGAHESGKLGEDPKG----IPNNLMPYIQQVAVGRHPELNVYGQDYPTKDG 785
            ++  +LV GG G+IG+    QLL  +    V +ID  H S          LA   L +++  H  +L ++  L    +    D V HF A  +V ES + P  YFD+NL+GT+NL  A+ +     +L FSS+A ++G    +P  E+       A NPYG +K +  EI        P +++I LRYFN  GA  S   G   K     IPN +  ++++          +YG DY TKDG
Sbjct:    4 TKSKVLVLGGLGYIGSCFIDQLLKQYPDVTVSVIDINHTS----------LALQLLPRQVNVHFVNLLDRAQLTDTIAQINPDVVFHFAAKTSVKESTEQPLTYFDHNLVGTLNLLHALKELQKPIQLFFSSTAAVFGSASTLPIPENLVLEETLASNPYGISK-FLSEIVLQTLTRSPHFQVIALRYFNVAGA--SNPFGNFNKNTTLLIPNLIKAFMEK------RTFFLYGDDYDTKDG 226          
BLAST of CK939533 vs. ExPASy Swiss-Prot
Match: GALE_MYCGE (UDP-glucose 4-epimerase OS=Mycoplasma genitalium GN=galE PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.317e-21
Identity = 73/242 (30.17%), Postives = 124/242 (51.24%), Query Frame = 3
Query:   84 MASEKNILVTGGAGFIGTHCALQLLHGGFKVVL--IDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCK-KLVFSSSATIYGQPEKIPCVEDF---PYGAMNPYGRTKQWCEEIAFDVQKADPEWRIILLRYFNPVGA--HESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTKDG 785
            + ++  + + GG G+IG+  A  +     K+++  IDN  N+    +  +K +        +EF+  DL ++  L ++ ++ + D V HF A  +V+ESV +P +YFD N+IGT+NL  A++      KL F+SSA +YGQ       E+       A NPYG +K + +E+  +    + + +++ LR+FN  GA        G     IPN +  +++Q          +YG DY TKDG
Sbjct:    2 IGAKTRVAIVGGIGYIGSCFASFIKEQNDKLIVTVIDNNKNN--HVIKLLKKIG-------IEFYFADLLDRHKLTEVIAAIQPDVVFHFAAKTSVSESVHNPLKYFDCNVIGTLNLISAISNLQKPIKLFFASSAAVYGQTTNSYISEEIVITETQATNPYGLSK-FLDELILNAVAKNSQLQVVCLRFFNVAGAILPFGNFNGNTTLLIPNLVKAFLKQT------PFFLYGNDYATKDG 227          
BLAST of CK939533 vs. ExPASy Swiss-Prot
Match: Y1055_METJA (Uncharacterized protein MJ1055 OS=Methanocaldococcus jannaschii GN=MJ1055 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.863e-18
Identity = 53/148 (35.81%), Postives = 87/148 (58.78%), Query Frame = 3
Query:   96 KNILVTGGAGFIGTHCALQLL--HGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLE---FHVGDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVED 524
            KNILVTG AGFIG H +  L+  +   KV+ IDNL+N     +   ++    E+ K  E   F   D  + DDL +    ++ D ++H GA   V  S+Q+P+ Y  +N +GT+N+++   +++ +K+V++SS+++YG   KIP  ED
Sbjct:    4 KNILVTGSAGFIGFHLSKYLMDNYEDLKVIGIDNLNNYYNPVLKEKRN----EILKNYENYTFIKLDFSDWDDLVENLKDKEIDLIVHLGAQAGVRYSLQNPWAYIKSNEMGTLNIFEFARRFDIEKVVYASSSSVYGGNRKIPFSED 147          
BLAST of CK939533 vs. ExPASy Swiss-Prot
Match: CAPI_STAAU (Protein capI OS=Staphylococcus aureus GN=capI PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.120e-16
Identity = 44/133 (33.08%), Postives = 81/133 (60.90%), Query Frame = 3
Query:  102 ILVTGGAGFIGTHCALQLLHGGFKVVLIDNLHN--SVPEAVDRVKDLAGPELAKKLEFHVGDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYG 494
            IL+TG AGFIG+H A +L+  G  V+ +D++++  SV    DR+K +      +   F+   L N DDL K+F  ++ + V++  A   V  S+++P  Y D+N++G +N+ +    +N + L+++SS+++YG
Sbjct:    3 ILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIG----KENFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNLIYASSSSVYG 131          
BLAST of CK939533 vs. ExPASy Swiss-Prot
Match: YCL2_ECO11 (Uncharacterized 37.6 kDa protein in cld 5'region OS=Escherichia coli O111:H- PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.907e-15
Identity = 55/163 (33.74%), Postives = 91/163 (55.83%), Query Frame = 3
Query:  105 LVTGGAGFIGTHCALQLLHGGFKVVLIDNLHNSVPEAVD--RVKDLAGPELAKKLEFHVGDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIP-CVEDFPYGAMNPYGRTKQWCEEIA 584
            LVTG AGFIG H + +LL  G +VV IDNL++    ++   R++ LA P      +FH  DL +++ +  LF+S  F+ V       AV  S+++P  Y D+NL G +N+ +       + L+++SS+++YG   K+P   +D     ++ Y  TK+  E +A
Sbjct:    4 LVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGF----QFHKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQHLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMA 162          
BLAST of CK939533 vs. ExPASy Swiss-Prot
Match: VIPB_SALTI (Vi polysaccharide biosynthesis protein vipB/tviC OS=Salmonella typhi GN=vipB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.384e-14
Identity = 55/189 (29.10%), Postives = 89/189 (47.09%), Query Frame = 3
Query:   96 KNILVTGGAGFIGTHCALQLLHGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKQWCEEIAFDVQKADPEWRIILLRYFNPVGAHES 662
            K  L+TG AGFIG+    +LL     V+ +DN        +D V+     E   +  F  GD+R   D  K  + +  D V+H  AL +V  S++ P      N+ G +N+  A    +     +++S++ YG    +P +E+     ++PY  TK +  E+  DV     E+  I LRYFN  G  ++
Sbjct:   16 KRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQK--ACKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAASSSTYGDHPDLPKIEERIGRPLSPYAVTK-YVNELYADVFARSYEFNAIGLRYFNVFGRRQN 201          
BLAST of CK939533 vs. ExPASy Swiss-Prot
Match: SPSJ_BACSU (Spore coat polysaccharide biosynthesis protein spsJ OS=Bacillus subtilis GN=spsJ PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.847e-14
Identity = 51/160 (31.87%), Postives = 83/160 (51.88%), Query Frame = 3
Query:   96 KNILVTGGAGFIG-THCALQLLHGGFKVVLIDNL-HNSVPEAVDRVKDLAGPELAKKLEFHVGDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYG--QPEKIPCVEDFPYGAMNPYGRTK 563
            K+ L+TGGAGFIG T   L L     ++ ++D L + S PE ++++K  +      +  F  GD+  ++D+D+ F  + +D VIHF A   V  S+     +   N++GT  L +A+ K   KKL+  S+  +YG  + +     E  P    NPY  +K
Sbjct:    3 KSYLITGGAGFIGLTFTKLMLRETDARITVLDKLTYASHPEEMEKLKQNS------RFRFVKGDISVQEDIDRAFD-ETYDGVIHFAAESHVDRSISQAEPFITTNVMGTYRLAEAVLKGKAKKLIHISTDEVYGDLKADDPAFTETTPLSPNNPYSASK 155          
BLAST of CK939533 vs. ExPASy Swiss-Prot
Match: RFBE_SALTI (CDP-paratose 2-epimerase OS=Salmonella typhi GN=rfbE PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.680e-13
Identity = 45/136 (33.09%), Postives = 76/136 (55.88%), Query Frame = 3
Query:  102 ILVTGGAGFIGTHCALQLLHGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCK-KLVFSSSATIYGQPEK 506
            +L+TGG GF+G++ A   L  G  +++ DNL  S   A D +  L+        EF  GD+RNK+D+ +L +    D+  H     A+  S+ +P   F+ N+ GT+NL +A+ +YN    +++SS+  +YG  E+
Sbjct:    3 LLITGGCGFLGSNLASFALSQGIDLIVFDNL--SRKGATDNLHWLSS---LGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQ 133          
The following BLAST results are available for this feature:
BLAST of CK939533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
GAL10_CANMA4.553e-2745.93Bifunctional protein GAL10 (Fragment) OS=Candida m... [more]
GALE_METJA6.804e-2333.62Putative UDP-glucose 4-epimerase OS=Methanocaldoco... [more]
GALE_MYCPN1.676e-2132.64UDP-glucose 4-epimerase OS=Mycoplasma pneumoniae G... [more]
GALE_MYCGE8.317e-2130.17UDP-glucose 4-epimerase OS=Mycoplasma genitalium G... [more]
Y1055_METJA3.863e-1835.81Uncharacterized protein MJ1055 OS=Methanocaldococc... [more]
CAPI_STAAU2.120e-1633.08Protein capI OS=Staphylococcus aureus GN=capI PE=3... [more]
YCL2_ECO118.907e-1533.74Uncharacterized 37.6 kDa protein in cld 5'region O... [more]
VIPB_SALTI3.384e-1429.10Vi polysaccharide biosynthesis protein vipB/tviC O... [more]
SPSJ_BACSU9.847e-1431.88Spore coat polysaccharide biosynthesis protein sps... [more]
RFBE_SALTI1.680e-1333.09CDP-paratose 2-epimerase OS=Salmonella typhi GN=rf... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004749_C10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939533 ID=CK939533; Name=CK939533; organism=Citrus sinensis; type=EST; length=787bp
GGGGACTTTATTCATTTNNNTCTTTTTAATATAATCGTCGCTCTCACCTT
CTTTCCCCTTCTCCTCCAATCCTTTGCCTTGCAATGGCGTCAGAGAAAAA
TATCCTGGTGACCGGTGGAGCTGGCTTTATTGGAACGCACTGTGCGCTTC
AGCTTCTACATGGAGGGTTTAAGGTGGTGCTTATCGATAATTTACATAAC
TCTGTCCCTGAAGCTGTTGATAGAGTCAAGGACTTGGCGGGTCCTGAGCT
CGCTAAGAAGCTCGAGTTCCATGTGGGTGATCTTAGGAACAAGGATGACT
TGGATAAGCTTTTTTCTAGTCAAAAATTTGATGCTGTGATCCATTTTGGT
GCCCTTAAGGCTGTGGCAGAGAGTGTTCAACATCCTTTCCGTTATTTTGA
TAATAATTTGATTGGTACCATCAATCTGTATCAGGCCATGGCAAAATATA
ACTGTAAGAAGTTGGTATTTTCATCATCCGCAACTATCTATGGACAGCCT
GAAAAAATACCTTGTGTTGAGGACTTCCCGTATGGTGCTATGAATCCTTA
TGGACGAACTAAGCAATGGTGCGAAGAAATTGCTTTTGATGTTCAAAAGG
CAGACCCAGAATGGAGAATAATATTACTGAGGTACTTCAATCCTGTTGGT
GCTCATGAGAGTGGTAAACTCGGTGAAGATCCAAAGGGCATACCAAACAA
TCTCATGCCTTACATACAGCAAGTCGCCGTCGGCAGACATCCAGAGCTTA
ATGTTTATGGTCAGGATTATCCAACAAAGGATGGTAG
back to top