CK939533

Overview
NameCK939533
Unique NameCK939533
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939533 vs. ExPASy Swiss-Prot
Match: UXS1_DANRE (UDP-glucuronic acid decarboxylase 1 OS=Danio rerio GN=uxs1 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.887e-13
Identity = 65/249 (26.10%), Postives = 113/249 (45.38%), Query Frame = 3
Query:   63 PPILCLAMASEKNILVTGGAGFIGTHCALQLLHGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVG----DLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNP------YGRTKQWCEEIAFDVQKADPEWRIILLRYFNPVGAHESGKLGEDPKGIPNNLMPYIQQVAVGRHPELNVYGQDYPTK 779
            PP+  L+    K IL+TGGAGF+G+H   +L+  G +V ++DN                     + +E  +G    +L N D ++ L+   + D + H  +  +    + +P +    N IGT+N+   +AK    +L+ +S++ +YG PE  P  ED+ +G +NP      Y   K+  E + +   K +    + + R FN  G   S     D + + N ++  +Q  A      L VYG    T+
Sbjct:   76 PPVKFLSEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTG---------------RKRNVEHWIGHENFELINHDVVEPLYI--EVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNML-GLAKRVGARLLLASTSEVYGDPEVHPQNEDY-WGHVNPIGPRACYDEGKRVAETMCYAYMKQEGV-EVRVARIFNTFG---SRMHMNDGRVVSNFILQALQGEA------LTVYGSGSQTR 295          
BLAST of CK939533 vs. ExPASy Swiss-Prot
Match: TGDS_DICDI (dTDP-D-glucose 4,6-dehydratase OS=Dictyostelium discoideum GN=tgds PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.887e-13
Identity = 40/135 (29.63%), Postives = 71/135 (52.59%), Query Frame = 3
Query:   96 KNILVTGGAGFIGTHCALQLLHG--GFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVGDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYG 494
            + IL+TGGAGFIG+H A+ L       K++++D L     +    + +L         +F+ G++ + + L+ +F  +K D VIH  A   V  S +   ++ +NN++GT  L +    Y  KK ++ S+  +YG
Sbjct:   10 QKILITGGAGFIGSHLAIYLTKKFKNSKIIVLDKL-----DYCSNINNLGCVLKELNFKFYKGNILDSELLENIFEKEKIDIVIHLAAYTHVDNSFKQSIKFTENNILGTHYLLETCKNYKLKKFIYVSTDEVYG 139          
BLAST of CK939533 vs. ExPASy Swiss-Prot
Match: GAE6_ARATH (UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thaliana GN=GAE6 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.887e-13
Identity = 52/166 (31.33%), Postives = 88/166 (53.01%), Query Frame = 3
Query:   99 NILVTGGAGFIGTHCALQLLHGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHV--GDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCK-KLVFSSSATIYGQPEKIPCVEDFPYG-AMNPYGRTKQWCEEIA 584
            ++LVTG AGF+G+HC+L L   G  V+  DN ++    ++ R +     EL +K +  +  GDL +   L KLF    F  ++H  A   V  ++++P  Y  +N+ G +NL +     N +  +V++SS+++YG   + P  E+       + Y  TK+  EEIA
Sbjct:  113 SVLVTGAAGFVGSHCSLALRKRGDGVLGFDNFNDYYDPSLKRARQ----ELLEKQQVFIVEGDLNDGPLLRKLFDVVPFTHILHLAAQAGVRYAMKNPQSYIASNIAGFVNLLEVAKAANPQPAIVWASSSSVYGLNTENPFSEEHRTDQPASLYAATKKAGEEIA 274          
BLAST of CK939533 vs. ExPASy Swiss-Prot
Match: GAE1_ARATH (UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thaliana GN=GAE1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.887e-13
Identity = 55/164 (33.54%), Postives = 87/164 (53.05%), Query Frame = 3
Query:   99 NILVTGGAGFIGTHCALQLLHGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHV-GDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCK-KLVFSSSATIYGQPEKIPCVE-DFPYGAMNPYGRTKQWCEEI 581
            ++LVTG  GF+G+H +L L   G  VV +DN +N    ++ R +      L+ +  F V GDL +   L KLF    F  V+H  A   V  ++++P  Y  +N+ G +NL +     N +  +V++SS+++YG  EK+P  E D      + Y  TK+  EEI
Sbjct:   89 SVLVTGATGFVGSHVSLALRKRGDGVVGLDNFNNYYDPSLKRARRSL---LSSRGIFVVEGDLNDAKLLAKLFDVVAFTHVMHLAAQAGVRYALENPQSYVHSNIAGLVNLLEICKAANPQPAIVWASSSSVYGLNEKVPFSESDRTDQPASLYAATKKAGEEI 249          
BLAST of CK939533 vs. ExPASy Swiss-Prot
Match: UXS1_RAT (UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.089e-12
Identity = 48/168 (28.57%), Postives = 84/168 (50.00%), Query Frame = 3
Query:   63 PPILCLAMASEKNILVTGGAGFIGTHCALQLLHGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVG----DLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYG 554
            PP+  L+    K IL+TGGAGF+G+H   +L+  G +V ++DN                     + +E  +G    +L N D ++ L+   + D + H  +  +    + +P +    N IGT+N+   +AK    +L+ +S++ +YG PE  P  ED+ +G +NP G
Sbjct:   78 PPVKFLSEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTG---------------RKRNVEHWIGHENFELINHDVVEPLYI--EVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNML-GLAKRVGARLLLASTSEVYGDPEVHPQSEDY-WGHVNPIG 226          
BLAST of CK939533 vs. ExPASy Swiss-Prot
Match: UXS1_PONAB (UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.089e-12
Identity = 48/168 (28.57%), Postives = 84/168 (50.00%), Query Frame = 3
Query:   63 PPILCLAMASEKNILVTGGAGFIGTHCALQLLHGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVG----DLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYG 554
            PP+  L+    K IL+TGGAGF+G+H   +L+  G +V ++DN                     + +E  +G    +L N D ++ L+   + D + H  +  +    + +P +    N IGT+N+   +AK    +L+ +S++ +YG PE  P  ED+ +G +NP G
Sbjct:   78 PPVKFLSEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTG---------------RKRNVEHWIGHENFELINHDVVEPLYI--EVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNML-GLAKRVGARLLLASTSEVYGDPEVHPQSEDY-WGHVNPIG 226          
BLAST of CK939533 vs. ExPASy Swiss-Prot
Match: UXS1_MOUSE (UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.089e-12
Identity = 48/168 (28.57%), Postives = 84/168 (50.00%), Query Frame = 3
Query:   63 PPILCLAMASEKNILVTGGAGFIGTHCALQLLHGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVG----DLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYG 554
            PP+  L+    K IL+TGGAGF+G+H   +L+  G +V ++DN                     + +E  +G    +L N D ++ L+   + D + H  +  +    + +P +    N IGT+N+   +AK    +L+ +S++ +YG PE  P  ED+ +G +NP G
Sbjct:   78 PPVKFLSEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTG---------------RKRNVEHWIGHENFELINHDVVEPLYI--EVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNML-GLAKRVGARLLLASTSEVYGDPEVHPQSEDY-WGHVNPIG 226          
BLAST of CK939533 vs. ExPASy Swiss-Prot
Match: UXS1_HUMAN (UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.089e-12
Identity = 48/168 (28.57%), Postives = 84/168 (50.00%), Query Frame = 3
Query:   63 PPILCLAMASEKNILVTGGAGFIGTHCALQLLHGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHVG----DLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYG 554
            PP+  L+    K IL+TGGAGF+G+H   +L+  G +V ++DN                     + +E  +G    +L N D ++ L+   + D + H  +  +    + +P +    N IGT+N+   +AK    +L+ +S++ +YG PE  P  ED+ +G +NP G
Sbjct:   78 PPVKFLSEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTG---------------RKRNVEHWIGHENFELINHDVVEPLYI--EVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNML-GLAKRVGARLLLASTSEVYGDPEVHPQSEDY-WGHVNPIG 226          
BLAST of CK939533 vs. ExPASy Swiss-Prot
Match: GAE4_ARATH (UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thaliana GN=GAE4 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.089e-12
Identity = 53/164 (32.32%), Postives = 86/164 (52.44%), Query Frame = 3
Query:  102 ILVTGGAGFIGTHCALQLLHGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHV-GDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCK-KLVFSSSATIYGQPEKIPCVE-DFPYGAMNPYGRTKQWCEEIA 584
            +LVTG AGF+GTH +  L   G  V+ +DN ++    ++ R +      L +   F V GD+ + + L KLF    F  V+H  A   V  ++++P  Y  +N+ G +NL +     N +  +V++SS+++YG   K+P  E D      + Y  TK+  EEIA
Sbjct:   99 VLVTGAAGFVGTHVSAALKRRGDGVIGLDNFNDYYDPSLKRARRAL---LERSGIFIVEGDINDVELLRKLFKIVSFTHVMHLAAQAGVRYAMENPSSYVHSNIAGFVNLLEICKSVNPQPAIVWASSSSVYGLNTKVPFSEKDKTDQPASLYAATKKAGEEIA 259          
BLAST of CK939533 vs. ExPASy Swiss-Prot
Match: GAE3_ARATH (UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana GN=GAE3 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.422e-12
Identity = 53/165 (32.12%), Postives = 86/165 (52.12%), Query Frame = 3
Query:   99 NILVTGGAGFIGTHCALQLLHGGFKVVLIDNLHNSVPEAVDRVKDLAGPELAKKLEFHV-GDLRNKDDLDKLFSSQKFDAVIHFGALKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCK-KLVFSSSATIYGQPEKIPCVE-DFPYGAMNPYGRTKQWCEEIA 584
            ++LVTG AGF+GTH +  L   G  V+ +DN ++    ++ R +      L +   F V GD+ +   L KLF    F  V+H  A   V  ++++P  Y  +N+ G +NL +     N +  +V++SS+++YG   K+P  E D      + Y  TK+  EEIA
Sbjct:   92 SVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKRARQAL---LERSGVFVVEGDINDAALLKKLFEVVPFTHVMHLAAQAGVRYAMENPSSYVHSNIAGFVNLLEVCKSANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGEEIA 253          
The following BLAST results are available for this feature:
BLAST of CK939533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
UXS1_DANRE4.887e-1326.10UDP-glucuronic acid decarboxylase 1 OS=Danio rerio... [more]
TGDS_DICDI4.887e-1329.63dTDP-D-glucose 4,6-dehydratase OS=Dictyostelium di... [more]
GAE6_ARATH4.887e-1331.33UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thali... [more]
GAE1_ARATH4.887e-1333.54UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thali... [more]
UXS1_RAT1.089e-1228.57UDP-glucuronic acid decarboxylase 1 OS=Rattus norv... [more]
UXS1_PONAB1.089e-1228.57UDP-glucuronic acid decarboxylase 1 OS=Pongo abeli... [more]
UXS1_MOUSE1.089e-1228.57UDP-glucuronic acid decarboxylase 1 OS=Mus musculu... [more]
UXS1_HUMAN1.089e-1228.57UDP-glucuronic acid decarboxylase 1 OS=Homo sapien... [more]
GAE4_ARATH1.089e-1232.32UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thali... [more]
GAE3_ARATH1.422e-1232.12UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004749_C10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939533 ID=CK939533; Name=CK939533; organism=Citrus sinensis; type=EST; length=787bp
GGGGACTTTATTCATTTNNNTCTTTTTAATATAATCGTCGCTCTCACCTT
CTTTCCCCTTCTCCTCCAATCCTTTGCCTTGCAATGGCGTCAGAGAAAAA
TATCCTGGTGACCGGTGGAGCTGGCTTTATTGGAACGCACTGTGCGCTTC
AGCTTCTACATGGAGGGTTTAAGGTGGTGCTTATCGATAATTTACATAAC
TCTGTCCCTGAAGCTGTTGATAGAGTCAAGGACTTGGCGGGTCCTGAGCT
CGCTAAGAAGCTCGAGTTCCATGTGGGTGATCTTAGGAACAAGGATGACT
TGGATAAGCTTTTTTCTAGTCAAAAATTTGATGCTGTGATCCATTTTGGT
GCCCTTAAGGCTGTGGCAGAGAGTGTTCAACATCCTTTCCGTTATTTTGA
TAATAATTTGATTGGTACCATCAATCTGTATCAGGCCATGGCAAAATATA
ACTGTAAGAAGTTGGTATTTTCATCATCCGCAACTATCTATGGACAGCCT
GAAAAAATACCTTGTGTTGAGGACTTCCCGTATGGTGCTATGAATCCTTA
TGGACGAACTAAGCAATGGTGCGAAGAAATTGCTTTTGATGTTCAAAAGG
CAGACCCAGAATGGAGAATAATATTACTGAGGTACTTCAATCCTGTTGGT
GCTCATGAGAGTGGTAAACTCGGTGAAGATCCAAAGGGCATACCAAACAA
TCTCATGCCTTACATACAGCAAGTCGCCGTCGGCAGACATCCAGAGCTTA
ATGTTTATGGTCAGGATTATCCAACAAAGGATGGTAG
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